Query= MSMg01no544_o08.b1 MSMg01no544_o08.b1 CHROMAT_FILE:
MSMg01no544_o08.b1 PHD_FILE: MSMg01no544_o08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:43 2005
(595 letters)
>mm_chr12_83949754_83950747
Length = 994
Score = 1065 bits (551), Expect = 0.0
Identities = 581/591 (98%), Gaps = 2/591 (0%)
Strand = Plus / Plus
Query: 5 gaattccactgctgtgtctatttctgtcagggccaagaaagccgggcagaggtaattgta 64
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaatttcactgctgtgtctatttctgtcagggccaagaaagccgggcagaggtaattgta 264
Query: 65 ttgtaatgctccaccgtgactgaattgcttctgtcttgtacaaagccccttctatcattt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgtaatgctccaccgtgactgaattgcttctgtcttgtacaaagccccttctatcattt 324
Query: 125 acattcacagtgttcatacatctctcctgtgtgtagctctaagaacaggcagatcctctt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acattcacagtgttcatacatctctcctgtgtgtagctctaagaacaggcagatcctctt 384
Query: 185 gtgtaatttgtgtgattaatagactcagttctggtctagtacttagactgtaggtatata 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtgtaatttgtgtgattaatagactcagttctggtctagtacttagactgtaggtatata 444
Query: 245 aattatcataatcatacaggcaaaattacaggtaagtttttatatctgtcaggctctttt 304
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 445 aattatcataatcatacaggcaaaattacaggtaggtttttatatctgtcaggctctttt 504
Query: 305 tttttaaccattgcttcatggagaacaattatgaattgccaaccccaaggctggatgcta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttttaaccattgcttcatggagaacaattatgaattgccaaccccaaggctggatgcta 564
Query: 365 ggttctgatttggaacgtgaatagtccatcaatttgtgatgcagtgtgggcagtgtcggt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggttctgatttggaacgtgaatagtccatcaatttgtgatgcagtgtgggcagtgtcggt 624
Query: 425 gatagaaggtgggagcgggggcacaatacagcaagggtaaagaggatagtgcaaggaaga 484
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gatagaaggtggggg-gggggcacaatacagcaagggtaaagaggatagtgcaaggaaga 683
Query: 485 ttcaaactttaaaagaatgggagcacaccccaaaatcccagaatcatggaggtggagcca 544
|||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 684 ttcaaactgtaaaagaatgggagcacacccccaaatcccagaatcatggaggtcgagcg- 742
Query: 545 ggaggatcttgagttcaaagccagcctgagttatatagtgagacaggatct 595
|||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 743 ggaggatcttgagttcaaagtcagcctgagttatatagtgagacaggatct 793
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 994
Length adjustment: 10
Effective length of query: 585
Effective length of database: 984
Effective search space: 575640
Effective search space used: 575640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_o08.g1 MSMg01no544_o08.g1 CHROMAT_FILE:
MSMg01no544_o08.g1 PHD_FILE: MSMg01no544_o08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:43 2005
(539 letters)
>mm_chr12_84097985_84098921
Length = 937
Score = 1000 bits (517), Expect = 0.0
Identities = 533/539 (98%), Gaps = 2/539 (0%)
Strand = Plus / Minus
Query: 1 aaagaatttatgaaaatcaactcaacagattcattaattaacacagctctaacagttttg 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 737 aaagaatttatgaaaatcaactcaacagattctttaattaacacagctctaacagttttg 678
Query: 61 cccacatgagatagcctttaccttcattaatgtagaaaaagcagttcaacttgaatatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 cccacatgagatagcctttaccttcattaatgtagaaaaagcagttcaacttgaatatga 618
Query: 121 gctagctgaatggttttattgtagttttcccctaagtcttgataaacattttgtgtctga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gctagctgaatggttttattgtagttttcccctaagtcttgataaacattttgtgtctga 558
Query: 181 atggctgaagaaacaaatagccaagcataattaatatggctcttgagaagtgaacaatta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 atggctgaagaaacaaatagccaagcataattaatatggctcttgagaagtgaacaatta 498
Query: 241 taccgcttgggatattcctattcataacaaccagttaccaaatgttcccagactgtgctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 taccgcttgggatattcctattcataacaaccagttaccaaatgttcccagactgtgctg 438
Query: 301 ggacctgggatttggatcatggatcatgggagatagaacttcatctttcgattttgagga 360
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 437 ggacctgggatttggatcatggatcatgg--gatagaactttatctttcgattttgagga 380
Query: 361 tttctttaggtgattcccacctttcactcctgcctcctacaagcagcatgatcccagccg 420
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 379 tttctttaggtgattcccacctttcacccctgcctcctacaagcagcatgatcccagccg 320
Query: 421 tcaccccagggagcagtcagggtgccccggatttataccttggaggggtgaccagtgaca 480
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 319 tcaccccagggagcagtcagggtgccccggatttataccttagaggggtgaccagtgaca 260
Query: 481 gcaaaagactaagactccccttggagtctcaaaaggactttaatctctgagggctcctg 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gcaaaagactaagactccccttggagtctcaaaaggactttaatctctgagggctcctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 937
Length adjustment: 10
Effective length of query: 529
Effective length of database: 927
Effective search space: 490383
Effective search space used: 490383
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
