Query= MSMg01no547_b05.b1 MSMg01no547_b05.b1 CHROMAT_FILE:
MSMg01no547_b05.b1 PHD_FILE: MSMg01no547_b05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:36 2005
(689 letters)
>mm_chr12_61903422_61904510
Length = 1089
Score = 750 bits (388), Expect = 0.0
Identities = 445/472 (94%), Gaps = 16/472 (3%)
Strand = Plus / Minus
Query: 219 ttattttaaataat-ataataaaacaaaaagaaaaaaaatacaaaaaaataagagtgatt 277
|||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1089 ttattttaaataatca-aataaaacaaaaagaaaaaaattacaaaaaaataagagtgatt 1031
Query: 278 caaatacataacatacatgtatgaaactctcaaagaatagatagaaaatcttacatcata 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1030 caaatacataacatacatgtatgaaactctcaaagaatagatagaaaatcttacatcata 971
Query: 338 caaacaaattaattaagaagaaacatctccagatgaacaaaaaaggtgtacgtgtgtgtg 397
|||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||
Sbjct: 970 caaacaaattaattaagaagaaacatcttcagacgaacaaaaaaggtgtac----gtgtg 915
Query: 398 tgtgcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaactttatgatgattcagcattcc 457
| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 tatgc----------gtgtgtgtgtgtgtgtgtgtaaactttatgatgattcagcattcc 865
Query: 458 agttgaaacaatattaacatgctcaaaatagccaaactaaagaagcctccccaatgaagt 517
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 agttgaaataatattaacatgctcaaaatagccaaactaaagaagcctccccaatgaagt 805
Query: 518 tgtagttagttacaatcctaaatatttttcataacattaactcttcttagttagatgaag 577
||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 804 tgtagttagttacaatcttaagtatttttcaaaacattaactcttcttagttagatgaag 745
Query: 578 agaactcaaattggagatctccattgggtctctctctttgagaacccatggaagagggtg 637
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 agatctcaaattggagatctccattgggtctctctctttgagaacccatggaagagggtg 685
Query: 638 agaaagaaattttggtgttaatatggtcaagcacatcaagaaagctgggctc 689
|||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 agaaaggaatgttggtgttaatatggtcaagcacatcaagaaagctgggctc 633
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space: 732641
Effective search space used: 732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no547_b05.g1 MSMg01no547_b05.g1 CHROMAT_FILE:
MSMg01no547_b05.g1 PHD_FILE: MSMg01no547_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:36 2005
(628 letters)
>mm_chr12_61867959_61868987
Length = 1029
Score = 971 bits (502), Expect = 0.0
Identities = 541/556 (97%), Gaps = 5/556 (0%)
Strand = Plus / Plus
Query: 78 atatatatatatatacacacacatatacatatatatatat----gtgagtgtgtgtgtgt 133
||||||||||||| ||||||||||||| |||||||||||| ||||| ||||||||||
Sbjct: 274 atatatatatatacacacacacatatatatatatatatatatacgtgagcgtgtgtgtgt 333
Query: 134 gcgtgtatgagtaccacatcctaattataataaagactcttaaataacaagaaatgagca 193
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 334 gcgtgtatgagtaccacatcctaattataataaagactcttaattaacaagaaatgagca 393
Query: 194 ctagtagttaacaatccttatccagaaagtaataccagaataaattgagaatagcagtga 253
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 394 ctagtagttaacaatccttatccagaaagtaataccagaataaattgagaatagtagtga 453
Query: 254 tgaata-aaaaaattaagaaagaatctaatagaaatccttgggcaaaaatattcacaaac 312
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tgaatagaaaaaattaagaaagaatctaatagaaatccttgggcaaaaatattcacaaac 513
Query: 313 cgatcagaagaatataactggagaaatgtaacagaaactttgcaaaccagatgaggaaat 372
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 514 cgatcagaagaatataactggagaaatgtaacagaaactttgtaaaccagatgaggaaat 573
Query: 373 gaacttaaatacagtcacttaaaattttgatagataatcaaaagctaaaggaaattagga 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 gaacttaaatacagtcacttaaaattttgatagataatcaaaagctaaaggaaattagga 633
Query: 433 aattaaaacaaaaacaaaaacaaaaacaaaattagaaaaagaacatcaccaatatcaact 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 aattaaaacaaaaacaaaaacaaaaacaaaattagaaaaagaacatcaccaatatcaact 693
Query: 493 aaacaacaacaacagcagcaacaactataggcccataacaacattcctgtgcatatcaat 552
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 694 aaacaacaacaacaacagcaacagctataggcccataacaacattcctgtgcatatcaat 753
Query: 553 atacaattaacaaagtgctagaagaataggtggaaggaataaagctttgaagacatctcc 612
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 atacaattaatgaagtgctagaagaataggtggaaggaataaagctttgaagacatctcc 813
Query: 613 aatcaccaaatttcag 628
||||||||||||||||
Sbjct: 814 aatcaccaaatttcag 829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 70
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1029
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1019
Effective search space: 629742
Effective search space used: 629742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
