BAC Information

Click to search

BAC

Clone NameMSMg01-547C05
Chromosome12 (Build37)
Map Location 28,156,695 - 28,342,828
singlet/doubletdoublet
Overlap geneLOC100043009
Upstream geneTyki, LOC668731, 1700020D12Rik, Sox11
Downstream geneLOC669327, 1110015M06Rik, Allc, Colec11, Rps7, Rnaseh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547C05.T7 (MSMg01no547_c05.b1)MSMg01-547C05.TJ (MSMg01no547_c05.g1)
ACCAG611797AG611798
length756751
length of high quality
(start - end)		666 (34 - 699)634 (63 - 696)
definitionCHROMAT_FILE: MSMg01no547_c05.b1 PHD_FILE: MSMg01no547_c05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:41 2005CHROMAT_FILE: MSMg01no547_c05.g1 PHD_FILE: MSMg01no547_c05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,342,168 - 28,342,828)(28,156,695 - 28,157,328)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCGGATCCGCGGAATTCTGTAAA
GTGGGTGCACGTAGAGGAATATAAAATTTTAGAACACCCATTCAGATTGT
TTCAGGAAAATCCTAGTTCACAAACTACCATGTCTAATACAAACAGCACT
ATGGTACCAAGGCAGGAGAGTTTTCTGCTGGACATCTGTTCCAGGGCTGT
GGCCAGCTGCCACACCCAGTTAGGGCCTGGCATTTGTCCAGTGCTTCTGT
CTGCATTTGTCCAGTGGCCAGATGCCTGTTTCAGGTCCATGGTCAGCTGC
CACACCAGAGCCAGAGTTTGGTGTTCCTCTGGCAGTTCCCTGTCCGCATG
TGCAGTGCAGGCTCCAGCGCTCGGATGTTATCTGCGCTCTTAGAAAGCAA
AGCTGGCAGCTTGGATTAAATTCCCAGAAATAAGAAAATCCTTCCCCCTT
TCCTGTCCCCTCAAGTAGAAAAGGTGTCAATGTTTATACATTTTAATCGG
TTTTTTTGAAGTGTCATTCTCTCTGGGAAATTTGCTGTTCTGCTAGATTC
TAAGGTCCCCTGAAGCTCCTTTTCAAACCACCTGTCACTGAAGTCGAAGG
TACTTCAAAGTAAGACTGAAGGGACAGAACTCCATCATAATTAGACAAAG
TTGGGGGCTGGGAGATGACTCTATGGATAAAGTACTTGCTGGGCAAGCAT
GAGGACCTGGTTCTATCCCTAGAAGCCAGGGGAAATAGCAAGGCCCTGTG
GGATGC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTGTCCCTTTTCACTCTGGAAGCTACATGCAAATCTT
CCTGTCCACAGCCCTTGATCCCTGAGGGAGCCCCCTGGAGAGCCCACAGG
GATTCTTCAAGCAGAAAGGACCCAGATAAGACCAGAGGCTCCTGTCTCAT
CACCATAAATGTGTCCAGAGGGATCTGTAGAAGTGGCTTTTTGTACATCC
TTACACGGAAGCTCTGTGCCCACTGGCAGGTTGAATGCCCTGCCGTGCGT
TTAGTTGCTTTGTTGAGAGGCACAGCATGCCAGACCTTGGCACACCTAAG
ATCATCCCTTCCCTCATCTTCTTTTGGTACAATCTGGGTAACTCTAAAAT
TTATATTGAATTTTCATTGTTTGGTGGAGCATGGGAAAAAAGGAGTGCCT
GGGGGTAGACAGATATAGCCAGGGATTAACAGCAAGGGCAAGAAAGCCAC
TGCCCAGAGGAGTTGGGAGTGAAATGGCACATGGTTCTCTTTAGGTTTCT
GTCCTGAAGCTTATAAAGGCTCTTCCTCTGCTGCCCCAGGCTCAGAAGAC
CCTGTCTTGCCCAAACCCTANGGGATTCTCTTCATTCTGATGAAAGTGGC
AACATTACACAAAGCTTGTCAAACATGTGGCTGGTCAGCTGGGCAGTATA
CTTCTTGTGGGTTCCAGGCCTGCATTCTGGCTCATAACCAGTTTTCACAC
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_c05.b1 MSMg01no547_c05.b1 CHROMAT_FILE:
MSMg01no547_c05.b1 PHD_FILE: MSMg01no547_c05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:41 2005
         (666 letters)



>mm_chr12_28341963_28343028
          Length = 1066

 Score = 1270 bits (657), Expect = 0.0
 Identities = 660/661 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattctgtaaagtgggtgcacgtagaggaatataaaattttagaacacccattcagatt 65
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 gaattctgtaaagtgggtgtacgtagaggaatataaaattttagaacacccattcagatt 807

                                                                       
Query: 66  gtttcaggaaaatcctagttcacaaactaccatgtctaatacaaacagcactatggtacc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 gtttcaggaaaatcctagttcacaaactaccatgtctaatacaaacagcactatggtacc 747

                                                                       
Query: 126 aaggcaggagagttttctgctggacatctgttccagggctgtggccagctgccacaccca 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 aaggcaggagagttttctgctggacatctgttccagggctgtggccagctgccacaccca 687

                                                                       
Query: 186 gttagggcctggcatttgtccagtgcttctgtctgcatttgtccagtggccagatgcctg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gttagggcctggcatttgtccagtgcttctgtctgcatttgtccagtggccagatgcctg 627

                                                                       
Query: 246 tttcaggtccatggtcagctgccacaccagagccagagtttggtgttcctctggcagttc 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tttcaggtccatggtcagctgccacaccagagccagagtttggtgttcctctggcagttc 567

                                                                       
Query: 306 cctgtccgcatgtgcagtgcaggctccagcgctcggatgttatctgcgctcttagaaagc 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 cctgtccgcatgtgcagtgcaggctccagcgctcggatgttatctgcgctcttagaaagc 507

                                                                       
Query: 366 aaagctggcagcttggattaaattcccagaaataagaaaatccttccccctttcctgtcc 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aaagctggcagcttggattaaattcccagaaataagaaaatccttccccctttcctgtcc 447

                                                                       
Query: 426 cctcaagtagaaaaggtgtcaatgtttatacattttaatcggtttttttgaagtgtcatt 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 cctcaagtagaaaaggtgtcaatgtttatacattttaatcggtttttttgaagtgtcatt 387

                                                                       
Query: 486 ctctctgggaaatttgctgttctgctagattctaaggtcccctgaagctccttttcaaac 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ctctctgggaaatttgctgttctgctagattctaaggtcccctgaagctccttttcaaac 327

                                                                       
Query: 546 cacctgtcactgaagtcgaaggtacttcaaagtaagactgaagggacagaactccatcat 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cacctgtcactgaagtcgaaggtacttcaaagtaagactgaagggacagaactccatcat 267

                                                                       
Query: 606 aattagacaaagttgggggctgggagatgactctatggataaagtacttgctgggcaagc 665
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aattagacaaagttgggggctgggagatgactctatggataaagtacttgctgggcaagc 207

            
Query: 666 a 666
           |
Sbjct: 206 a 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space:   692736
Effective search space used:   692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no547_c05.g1 MSMg01no547_c05.g1 CHROMAT_FILE:
MSMg01no547_c05.g1 PHD_FILE: MSMg01no547_c05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:41 2005
         (634 letters)



>mm_chr12_28156495_28157528
          Length = 1034

 Score = 1220 bits (631), Expect = 0.0
 Identities = 633/634 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtcccttttcactctggaagctacatgcaaatcttcctgtccacagcccttgatccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtcccttttcactctggaagctacatgcaaatcttcctgtccacagcccttgatccc 260

                                                                       
Query: 61  tgagggagccccctggagagcccacagggattcttcaagcagaaaggacccagataagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagggagccccctggagagcccacagggattcttcaagcagaaaggacccagataagac 320

                                                                       
Query: 121 cagaggctcctgtctcatcaccataaatgtgtccagagggatctgtagaagtggcttttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagaggctcctgtctcatcaccataaatgtgtccagagggatctgtagaagtggcttttt 380

                                                                       
Query: 181 gtacatccttacacggaagctctgtgcccactggcaggttgaatgccctgccgtgcgttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtacatccttacacggaagctctgtgcccactggcaggttgaatgccctgccgtgcgttt 440

                                                                       
Query: 241 agttgctttgttgagaggcacagcatgccagaccttggcacacctaagatcatcccttcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agttgctttgttgagaggcacagcatgccagaccttggcacacctaagatcatcccttcc 500

                                                                       
Query: 301 ctcatcttcttttggtacaatctgggtaactctaaaatttatattgaattttcattgttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcatcttcttttggtacaatctgggtaactctaaaatttatattgaattttcattgttt 560

                                                                       
Query: 361 ggtggagcatgggaaaaaaggagtgcctgggggtagacagatatagccagggattaacag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtggagcatgggaaaaaaggagtgcctgggggtagacagatatagccagggattaacag 620

                                                                       
Query: 421 caagggcaagaaagccactgcccagaggagttgggagtgaaatggcacatggttctcttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caagggcaagaaagccactgcccagaggagttgggagtgaaatggcacatggttctcttt 680

                                                                       
Query: 481 aggtttctgtcctgaagcttataaaggctcttcctctgctgccccaggctcagaagaccc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggtttctgtcctgaagcttataaaggctcttcctctgctgccccaggctcagaagaccc 740

                                                                       
Query: 541 tgtcttgcccaaaccctangggattctcttcattctgatgaaagtggcaacattacacaa 600
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgtcttgcccaaaccctaggggattctcttcattctgatgaaagtggcaacattacacaa 800

                                             
Query: 601 agcttgtcaaacatgtggctggtcagctgggcag 634
           ||||||||||||||||||||||||||||||||||
Sbjct: 801 agcttgtcaaacatgtggctggtcagctgggcag 834


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |