BAC Information

Click to search

BAC

Clone NameMSMg01-547P06
Chromosome12 (Build37)
Map Location 63,342,617 - 63,481,242
singlet/doubletdoublet
Overlap geneLOC622746
Upstream geneLOC100040300, LOC665677, Nanog-ps2, Lrfn5, LOC665699, LOC665707, LOC100040403, LOC665713
Downstream geneLOC100040438, 1700047L15Rik, Tspyl-ps, EG665741, EG382606
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547P06.T7 (MSMg01no547_p06.b1)MSMg01-547P06.TJ (MSMg01no547_p06.g1)
ACCAG612417AG612418
length759765
length of high quality
(start - end)		682 (32 - 713)665 (63 - 727)
definitionCHROMAT_FILE: MSMg01no547_p06.b1 PHD_FILE: MSMg01no547_p06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:43 2005CHROMAT_FILE: MSMg01no547_p06.g1 PHD_FILE: MSMg01no547_p06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,342,617 - 63,343,294)(63,480,578 - 63,481,242)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATGAAACAC
TTAGGCAAATAAATGGAATGAACAAATATCATCCTGAGTAGATAACCCAT
TCACAAAAGAACACACATGGTATGTGCTCACTGGTAAGTGGATATTAACC
CAGAAGCCCAGAATACACAAGACAGAATTCATAAACCACATGAAGTTTAA
TAAGAAGGAAGACCAAATTTGGATAATTCAGTCCTTATTAGAAGGGAGAA
CAAAATACACACAAGAAGAGAAACAGAGACAAAATGTGGAGAAGGGATTG
AAGGAAAGGCCATCCAGAGACTGCCCTACTCAAACTGCCTATTTCAAACT
TCCTAGCAAGTATTTATGTGACTTTTTACTCAGGCAGCACTTCTATAGTA
CAAAATCTAGAGTCTTTTTTAAAATAATAAAGTTGAAAGGATTGAGTAGT
AAAAATATAAGAACCGCCAAGAAGAAATGTTTTTTAATCATCTAGAAAGA
GAAAAATATCATAGTAAGATGAGTTATAGAATCTTGACATCTGAGCAGAA
TGACTACTTAGATCCATCCCATATACAGTTACCAAACCAGACACTATTGT
GGATGCCAACAAGTGTTTGCTGATGGGAGCCTGATATACCAGTCTCCTGA
GAGGCTCTGCCAGTGCCTGACAAATACAGAGGTGGATGCTCTCAGCCAAC
TATTGGACTGAGCACAGGCTCCCCAATGGAGGAGCTAAAGAAGGACCAAG
GAGCTGAAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTAGTTTATTCATTTGTATCTTGGAGTAGCATAAAATG
AATATATGCTATGTAATAAGAATACAAGTAATGAGAAAAGCAGCACAATT
AGGATTATTTACAATCTAACAGTAAGCCACTAGCTCCTTTTCCATTTAGT
TTCCCCTCTTACTTTAATCTTTATCTCTTGTACTAGATTTGTTTTGTTTT
AACATGATTTGGGTCTTCTGATAATTGTGAGAAATCTCTGAAGTGTTAGT
TTATTTTAGAAAATTGTAATGCTGAGTTCACATAACACATGATCACGTAA
ATTGTTGGAAGATAGCAAAATCAGGAGATTTTAATCAAATCCAAAATCAA
ATAGTACTGTGGCAAATTGCAAGAAAAATTTGAAATTATAAATCACTGCT
GTGATTTTTATGCATTATTTTCAATAAATTCTTTGGATTACGTGGAAGAA
TGTCAGGAATTTCCCCAAAGTTAATCAAATACTTCAGGATCAATTTATAC
ACACCAAAAAATATACAAAATTTAAAGATTAGTTGAAAATGCTTCTATGT
AGCTAAAAATCAAAATTTGAATACAGCATGTGTTCATCTATTAGGAATGT
TCACATTATCTTGAAATTATTTTCACATACCAACAGCTTCTGTAAGCCTG
CCCTGTATACAGCATAGCAACCATTGTGAATAATAAGCTATTGGTAATTG
CAAGCAATATTGACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_p06.b1 MSMg01no547_p06.b1 CHROMAT_FILE:
MSMg01no547_p06.b1 PHD_FILE: MSMg01no547_p06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:43 2005
         (682 letters)



>mm_chr12_63342413_63343494
          Length = 1082

 Score = 1295 bits (670), Expect = 0.0
 Identities = 676/678 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgaaacacttaggcaaataaatggaatgaacaaatatcatcctgagtagataa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgaaacacttaggcaaataaatggaatgaacaaatatcatcctgagtagataa 264

                                                                       
Query: 65  cccattcacaaaagaacacacatggtatgtgctcactggtaagtggatattaacccagaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cccattcacaaaagaacacacatggtatgtgctcactggtaagtggatattaacccagaa 324

                                                                       
Query: 125 gcccagaatacacaagacagaattcataaaccacatgaagtttaataagaaggaagacca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcccagaatacacaagacagaattcataaaccacatgaagtttaataagaaggaagacca 384

                                                                       
Query: 185 aatttggataattcagtccttattagaagggagaacaaaatacacacaagaagagaaaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatttggataattcagtccttattagaagggagaacaaaatacacacaagaagagaaaca 444

                                                                       
Query: 245 gagacaaaatgtggagaagggattgaaggaaaggccatccagagactgccctactcaaac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gagacaaaatgtggagaagggattgaaggaaaggccatccagagactgccctactcaaac 504

                                                                       
Query: 305 tgcctatttcaaacttcctagcaagtatttatgtgactttttactcaggcagcacttcta 364
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 505 tgcctatttcaaacttcctagcaaggatttatgtgactttttactcaggcagcacttcta 564

                                                                       
Query: 365 tagtacaaaatctagagtcttttttaaaataataaagttgaaaggattgagtagtaaaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tagtacaaaatctagagtcttttttaaaataataaagttgaaaggattgagtagtaaaaa 624

                                                                       
Query: 425 tataagaaccgccaagaagaaatgttttttaatcatctagaaagagaaaaatatcatagt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tataagaaccgccaagaagaaatgttttttaatcatctagaaagagaaaaatatcatagt 684

                                                                       
Query: 485 aagatgagttatagaatcttgacatctgagcagaatgactacttagatccatcccatata 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aagatgagttatagaatcttgacatctgagcagaatgactacttagatccatcccatata 744

                                                                       
Query: 545 cagttaccaaaccagacactattgtggatgccaacaagtgtttgctgatgggagcctgat 604
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 745 cagttaccaaaccagacactattgtggatgccaacaagtgtttgctgacgggagcctgat 804

                                                                       
Query: 605 ataccagtctcctgagaggctctgccagtgcctgacaaatacagaggtggatgctctcag 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ataccagtctcctgagaggctctgccagtgcctgacaaatacagaggtggatgctctcag 864

                             
Query: 665 ccaactattggactgagc 682
           ||||||||||||||||||
Sbjct: 865 ccaactattggactgagc 882


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space:   720384
Effective search space used:   720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no547_p06.g1 MSMg01no547_p06.g1 CHROMAT_FILE:
MSMg01no547_p06.g1 PHD_FILE: MSMg01no547_p06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:44 2005
         (665 letters)



>mm_chr12_63480378_63481442
          Length = 1065

 Score = 1263 bits (653), Expect = 0.0
 Identities = 662/665 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagtttattcatttgtatcttggagtagcataaaatgaatatatgctatgtaataagaa 60
           |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 865 ttagtttattcatttgtatcgtggagtaccataaaatgaatatatgctatgtaataagaa 806

                                                                       
Query: 61  tacaagtaatgagaaaagcagcacaattaggattatttacaatctaacagtaagccacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tacaagtaatgagaaaagcagcacaattaggattatttacaatctaacagtaagccacta 746

                                                                       
Query: 121 gctccttttccatttagtttcccctcttactttaatctttatctcttgtactagatttgt 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gctccttctccatttagtttcccctcttactttaatctttatctcttgtactagatttgt 686

                                                                       
Query: 181 tttgttttaacatgatttgggtcttctgataattgtgagaaatctctgaagtgttagttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tttgttttaacatgatttgggtcttctgataattgtgagaaatctctgaagtgttagttt 626

                                                                       
Query: 241 attttagaaaattgtaatgctgagttcacataacacatgatcacgtaaattgttggaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 attttagaaaattgtaatgctgagttcacataacacatgatcacgtaaattgttggaaga 566

                                                                       
Query: 301 tagcaaaatcaggagattttaatcaaatccaaaatcaaatagtactgtggcaaattgcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tagcaaaatcaggagattttaatcaaatccaaaatcaaatagtactgtggcaaattgcaa 506

                                                                       
Query: 361 gaaaaatttgaaattataaatcactgctgtgatttttatgcattattttcaataaattct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaaaaatttgaaattataaatcactgctgtgatttttatgcattattttcaataaattct 446

                                                                       
Query: 421 ttggattacgtggaagaatgtcaggaatttccccaaagttaatcaaatacttcaggatca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttggattacgtggaagaatgtcaggaatttccccaaagttaatcaaatacttcaggatca 386

                                                                       
Query: 481 atttatacacaccaaaaaatatacaaaatttaaagattagttgaaaatgcttctatgtag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atttatacacaccaaaaaatatacaaaatttaaagattagttgaaaatgcttctatgtag 326

                                                                       
Query: 541 ctaaaaatcaaaatttgaatacagcatgtgttcatctattaggaatgttcacattatctt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctaaaaatcaaaatttgaatacagcatgtgttcatctattaggaatgttcacattatctt 266

                                                                       
Query: 601 gaaattattttcacataccaacagcttctgtaagcctgccctgtatacagcatagcaacc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaaattattttcacataccaacagcttctgtaagcctgccctgtatacagcatagcaacc 206

                
Query: 661 attgt 665
           |||||
Sbjct: 205 attgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |