BAC Information

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BAC

Clone NameB6Ng01-001J11
Chromosome13 (Build37)
Map Location 41,740,656 - 41,923,559
singlet/doubletdoublet
Overlap geneEG328231, 9530008L14Rik
Upstream geneLOC100039048, Tcfap2a, EG621629, EG637157, LOC100039105, Gcnt2, Pak1ip1, Tmem14c, Mak, EG621771, Gcm2, LOC637277, Elovl2, LOC268650, BC024659, Nedd9, EG621976
Downstream geneLOC100039272, Hivep1, Edn1, Hn1-ps4, Phactr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001J11.bB6Ng01-001J11.g
ACCDH839869DH839870
length1,0651,147
definitionDH839869|Mus musculus domesticus DNA, BAC clone: B6Ng01-001J11, 5' end.DH839870|Mus musculus domesticus DNA, BAC clone: B6Ng01-001J11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,740,656 - 41,741,732)(41,922,419 - 41,923,559)
sequence
gaattctgtttgatcgtgctaggggtggggcagttacccagtcccttcat
cataatggttacacagcagtgtcgtggacttgtaaaagtatccctgtatt
tattcaaggccttaactaaccagactgttttccttcataaataaaacctg
tatgggttccagactcttaattcttcgctgattcaatgtgtagcactggc
tagctggatcagaaaaataaaatcactaagtcggaactagtctttgtggt
tattttgagttcagcatagaccaaagaactaaaggatcctttgactgtca
cagtagtgggatcctgtgtttgagagatgtctgtgggacagggcctgaag
agtgtcagcagctggctccatggctctggtggaaaaaacggagcagcgag
ctgagcagctcctgtcaggatcaaacgacaacatatcagttgtgacaacg
ggatccatttgtggtgtcagaatctgtcatggagaagccattaaaaggtt
aggctggaatttagcttacaatggtgtccccaaataaagactagctcaac
atgatgtcacctctcctattgtaggagaggatgggggcagagataataga
ttgacaggcaacccttagagaatttctcttttcatgttgaatggtattat
cttgcatggatcacattctatgttaaaatacccccgtttcaaatatgtct
acctgacttcagtcaccatttctgtgatgacacaagtgggcaggctcttc
tcgctttgcagtgtagaagagattaaagcaagaagaaactagatgtgggc
ttttccaaaagaactgtccccaaatgaaccaaagaacccttgaggttagc
cccagtgtggaagcagggcttttcttataattgaaaatcttgaacatgtg
gaagaaattagtaagatgggtttcttcttcaatatttatcagtgtttaat
ttctgggagatatgaatttggaaaaaaaattaaagcaattgaaaacacac
ttggtggattccacttttgttatgtatatttaccttcaagaagtctggtt
attttggctacttct
gaattccatgacggtgggcgatccaagtacttgacactccttaatctggt
aagtcggtttatccacgtctggaaccaacctcttatcagtaacgtgagag
tttttccacgaaccacttactaagcacaaactccctataggtcttccttc
gtcatggttggtgagttttggggcttcccctgctaatcagtagtttgttc
taaggaactaagtttggaaaagttctgtagctactggggtgtctaactgt
taagtgctcttttacaaagactttccgagcccaacttggggactatagac
ttgaatacaaaacacaggagagattttttttttttgaaccttgcttggga
aagtctgtgaaaagaaggcggtgtcacatgttgagtaggaagtgtgactt
ccaatgaaggagtaatgtcatttgacagcacgcaccgactcacagattta
gccaagaaaagcaaacacattttgccaccttcctctcccactacattttt
ttataggctcaagatccatctgaaaggagagatcacccgagccaacagcc
aatacacagcttcaactattataaccaaaccaaagttaaaacacagttct
gctgggtggtggcagggcaggccttcaactcctgcagaggcagaggcaag
caggtctttttgagtttgaggccagcctggtctacagagtgagttccagg
acaggaagagggatacatagaaaccctttctcaaaaaaccaaaataagca
aacacacaaataagcaaataaattataaatataaataaattaaaaacaaa
ataaaataaatacagttataaaattatctggtttcaagctgcaaaaaaaa
agtttttgtttttttttttctgttttcaagatttcattttagtttacttt
aagggcatgagagttttctcgtatccgccttttgtgcatgcaatgtgtac
tacatatgtcctgactggtgccttagaaggccagaaggggcatgagatct
tcctgaatactagagttaataggtgagctgtcctgtgggtgctggaactg
accctgatccctatgagaagaagccatcagcagcatccttaactgctgta
cctactgcctctatgattcttcagacacccggatccgaaatatgcga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_41740656_41741732
seq2: B6Ng01-001J11.b_46_1110

seq1  GAATTCTGTTTGATCGTGCTAGGGGTGGGGCAGTTACCCAGTCCCTTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTGATCGTGCTAGGGGTGGGGCAGTTACCCAGTCCCTTCAT  50

seq1  CATAATGGTTACACAGCAGTGTCGTGGACTTGTAAAAGTATCCCTGTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATGGTTACACAGCAGTGTCGTGGACTTGTAAAAGTATCCCTGTATT  100

seq1  TATTCAAGGCCTTAACTAACCAGACTGTTTTCCTTCATAAATAAAACCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAAGGCCTTAACTAACCAGACTGTTTTCCTTCATAAATAAAACCTG  150

seq1  TATGGGTTCCAGACTCTTAATTCTTCGCTGATTCAATGTGTAGCACTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGTTCCAGACTCTTAATTCTTCGCTGATTCAATGTGTAGCACTGGC  200

seq1  TAGCTGGATCAGAAAAATAAAATCACTAAGTCGGAACTAGTCTTTGTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGGATCAGAAAAATAAAATCACTAAGTCGGAACTAGTCTTTGTGGT  250

seq1  TATTTTGAGTTCAGCATAGACCAAAGAACTAAAGGATCCTTTGACTGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGAGTTCAGCATAGACCAAAGAACTAAAGGATCCTTTGACTGTCA  300

seq1  CAGTAGTGGGATCCTGTGTTTGAGAGATGTCTGTGGGACAGGGCCTGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGTGGGATCCTGTGTTTGAGAGATGTCTGTGGGACAGGGCCTGAAG  350

seq1  AGTGTCAGCAGCTGGCTCCATGGCTCTGGTGGAAAAAACGGAGCAGCGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCAGCAGCTGGCTCCATGGCTCTGGTGGAAAAAACGGAGCAGCGAG  400

seq1  CTGAGCAGCTCCTGTCAGGATCAAACGACAACATATCAGTTGTGACAACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCAGCTCCTGTCAGGATCAAACGACAACATATCAGTTGTGACAACG  450

seq1  GGATCCATTTGTGGTGTCAGAATCTGTCATGGAGAAGCCATTAAAAGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCATTTGTGGTGTCAGAATCTGTCATGGAGAAGCCATTAAAAGGTT  500

seq1  AGGCTGGAATTTAGCTTACAATGGTGTCCCCAAATAAAGACTAGCTCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGAATTTAGCTTACAATGGTGTCCCCAAATAAAGACTAGCTCAAC  550

seq1  ATGATGTCACCTCTCCTATTGTAGGAGAGGATGGGGGCAGAGATAATAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTCACCTCTCCTATTGTAGGAGAGGATGGGGGCAGAGATAATAGA  600

seq1  TTGACAGGCAACCCTTAGAGAATTTCTC-TTTCATGTTGAATGGTATTAT  649
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTGACAGGCAACCCTTAGAGAATTTCTCTTTTCATGTTGAATGGTATTAT  650

seq1  CTTGCATGGATCACATTCTATGTTAAAATACCCCCGTTTCAAATATGTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCATGGATCACATTCTATGTTAAAATACCCCCGTTTCAAATATGTCT  700

seq1  ACCTGACTTCAGTCACCATTTCTGTGATGACACAAGTGGGCAGGCTCTTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGACTTCAGTCACCATTTCTGTGATGACACAAGTGGGCAGGCTCTTC  750

seq1  TCGCTTTGCAGTGTAGAAGAGAATTAAAGCAAGAAGAAACTAGATGTGGG  799
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCGCTTTGCAGTGTAGAAGAG-ATTAAAGCAAGAAGAAACTAGATGTGGG  799

seq1  CTTTTCCAAAAGAACTGTCCCCAAAATGAACCAAAGAACCCTTGAGGTTA  849
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTTTTCCAAAAGAACTGTCCCC-AAATGAACCAAAGAACCCTTGAGGTTA  848

seq1  GCCCCAGTGTGGAAGCAGGGCTTTTCTTATAATTGAAAATC-TGAACAAT  898
      ||||||||||||||||||||||||||||||||||||||||| ||||| ||
seq2  GCCCCAGTGTGGAAGCAGGGCTTTTCTTATAATTGAAAATCTTGAAC-AT  897

seq1  GTGGAAGAAAATAAGTAAGAATTGGTTTCTTCTTCAATATCTATTCAGTG  948
      ||||||| |||| |||||| || ||||||||||||||||| || ||||||
seq2  GTGGAAG-AAATTAGTAAG-ATGGGTTTCTTCTTCAATATTTA-TCAGTG  944

seq1  TTTTAATTTCTGGAAGATAATGAAATTTGAAAAAAAAAATAAAAGCAATT  998
       |||||||||||| |||| ||||| || |  ||||||||| |||||||||
seq2  -TTTAATTTCTGGGAGAT-ATGAATTTGG--AAAAAAAATTAAAGCAATT  990

seq1  TGAAAAACACCACTTGGTGGGATTCCAACTTTGTAATGTATATATACCTC  1048
         |||||| |||||||| ||||||||  ||||| |||||||| ||||| 
seq2  --GAAAACA-CACTTGGT-GGATTCCACTTTTGTTATGTATATTTACCTT  1036

seq1  AAAGAAGTCTGGTTATTTTGGCTACTTCT  1077
       ||||||||||||||||||||||||||||
seq2  CAAGAAGTCTGGTTATTTTGGCTACTTCT  1065

seq1: chr13_41922419_41923559
seq2: B6Ng01-001J11.g_71_1217 (reverse)

seq1  TCGCATA-TTCTGATCCCGGTGTCTGAGAGATCATAGA-GCAGTAGGTAC  48
      ||||||| ||| ||||| |||||||||   |||||||| |||||||||||
seq2  TCGCATATTTCGGATCCGGGTGTCTGAAGAATCATAGAGGCAGTAGGTAC  50

seq1  AGCAGTTAAGGATGCTGCTGCT-GCTTCTTCTTCATAGGACTCAGGGTCA  97
      |||||||||||||||||||| | |||||||| |||||||  |||||||||
seq2  AGCAGTTAAGGATGCTGCTGATGGCTTCTTC-TCATAGGGATCAGGGTCA  99

seq1  GTTCCCAGCACCCACAGGACAGCTCACCTA-TAACTCTAGTA-TCAGG-A  144
      ||| |||||||||||||||||||||||||| ||||||||||| ||||| |
seq2  GTT-CCAGCACCCACAGGACAGCTCACCTATTAACTCTAGTATTCAGGAA  148

seq1  GATCTCATGCCCCCTTCTGGCC-TCTAAGGCACCAGTCA-GACATATGTA  192
      ||||||||| |||||||||||| |||||||||||||||| ||||||||||
seq2  GATCTCATG-CCCCTTCTGGCCTTCTAAGGCACCAGTCAGGACATATGTA  197

seq1  GTACACATTGCATGCACAAAAGGC-GATACGAGAAAAACTCTCATGCCCT  241
      |||||||||||||||||||||||| |||||||| ||||||||||||||||
seq2  GTACACATTGCATGCACAAAAGGCGGATACGAG-AAAACTCTCATGCCCT  246

seq1  TAAAGTAAAACTAAAATGAAATCTTGAAAACAG-AAAAAAAAAACAAAAA  290
      |||||| |||||||||||||||||||||||||| ||||||||||||||||
seq2  TAAAGT-AAACTAAAATGAAATCTTGAAAACAGAAAAAAAAAAACAAAAA  295

seq1  CTTTTTTTTTGCAGCTTGAAACCAGATAATTTTATAACTGTATTTATTTT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTTGCAGCTTGAAACCAGATAATTTTATAACTGTATTTATTTT  345

seq1  ATTTTGTTTTTAATTTATTTATATTTATAATTTATTTGCTTATTTGTGTG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTTTTAATTTATTTATATTTATAATTTATTTGCTTATTTGTGTG  395

seq1  TTTGCTTATTTTGGTTTTTTGAGAAAGGGTTTCTATGTATCCCTCTTCCT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTATTTTGGTTTTTTGAGAAAGGGTTTCTATGTATCCCTCTTCCT  445

seq1  GTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTC-AAAAGACC  489
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAAAAAGACC  495

seq1  TGCTTGCCTCTGCCTCTGCAGGAGTTGAAGGCCTGCCCTGCCACCACCCA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCCTCTGCCTCTGCAGGAGTTGAAGGCCTGCCCTGCCACCACCCA  545

seq1  GCAGAACTGTGTTTTAACTTTGGTTTGGTTATAATAGTTGAAGCTGTGTA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAACTGTGTTTTAACTTTGGTTTGGTTATAATAGTTGAAGCTGTGTA  595

seq1  TTGGCTGTTGGCTCGGGTGATCTCTCCTTTCAGATGGATCTTGAGCCTAT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGTTGGCTCGGGTGATCTCTCCTTTCAGATGGATCTTGAGCCTAT  645

seq1  AAAAAAATGTAGTGGGAGAGGAAGGTGGCAAAATGTGTTTGCTTTTCTTG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATGTAGTGGGAGAGGAAGGTGGCAAAATGTGTTTGCTTTTCTTG  695

seq1  GCTAAATCTGTGAGTCGGTGCGTGCTGTCAAATGACATTACTCCTTCATT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAATCTGTGAGTCGGTGCGTGCTGTCAAATGACATTACTCCTTCATT  745

seq1  GGAAGTCACACTTCCTACTCAACATGTGACACCGCCTTCTTTTCACAGAC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCACACTTCCTACTCAACATGTGACACCGCCTTCTTTTCACAGAC  795

seq1  TTTCCCAAGCAAGGTTCAAAAAAAAAAAATCTCTCCTGTGTTTTGTATTC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAAGCAAGGTTCAAAAAAAAAAAATCTCTCCTGTGTTTTGTATTC  845

seq1  AAGTCTATAGTCCCCAAGTTGGGCTCGGAAAGTCTTTGTAAAAGAGCACT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTATAGTCCCCAAGTTGGGCTCGGAAAGTCTTTGTAAAAGAGCACT  895

seq1  TAACAGTTAGACACCCCAGTAGCTACAGAACTTTTCCAAACTTAGTTCCT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTTAGACACCCCAGTAGCTACAGAACTTTTCCAAACTTAGTTCCT  945

seq1  TAGAACAAACTACTGATTAGCAGGGGAAGCCCCAAAACTCACCAACCATG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACAAACTACTGATTAGCAGGGGAAGCCCCAAAACTCACCAACCATG  995

seq1  ACGAAGGAAGACCTATAGGGAGTTTGTGCTTAGTAAGTGGTTCGTGGAAA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAGGAAGACCTATAGGGAGTTTGTGCTTAGTAAGTGGTTCGTGGAAA  1045

seq1  AACTCTCACGTTACTGATAAGAGGTTGGTTCCAGACGTGGATAAACCGAC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCACGTTACTGATAAGAGGTTGGTTCCAGACGTGGATAAACCGAC  1095

seq1  TTACCAGATTAAGGAGTGTCAAGTACTTGGATCGCCCACCGTCATGGAAT  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAGATTAAGGAGTGTCAAGTACTTGGATCGCCCACCGTCATGGAAT  1145

seq1  TC  1141
      ||
seq2  TC  1147