BAC Information

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BAC

Clone NameB6Ng01-001M06
Chromosome13 (Build37)
Map Location 101,827,958 - 101,828,899
singlet/doubletsinglet
Overlap genenone
Upstream geneBdp1, Serf1, Smn1, Naip2, Birc1-rs1, Naip5, Birc1c-ps1, Birc1f, EG667838, Naip1, Gtf2h2, Ocln, LOC667861, Marveld2, Rad17, Taf9, Ccdc125, Cdk7, Mrps36, Cenph, Ccnb1, Slc30a5, LOC619865, LOC619917, EG619937
Downstream gene4933416M06Rik, LOC100039971, LOC100039983, Pik3r1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001M06.bB6Ng01-001M06.g
ACCDH839994DH839995
length1,238953
definitionDH839994|Mus musculus domesticus DNA, BAC clone: B6Ng01-001M06, 5' end.DH839995|Mus musculus domesticus DNA, BAC clone: B6Ng01-001M06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccat
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctggatcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagaagatttgaagttttatcata
cagatccttcacctccttagttagagtcacgcaagatattttatattatt
tggtgactattgagaaggttgtgtttccctatttctttctcagctgatta
tctttgtatagaggaaagggcatggactggttgagtttattatattgcag
ctacttcacggaagctgttatcaaggtttaggactctctggagaaatttt
tacggccatacattactatctaccatcggccaaagggaaattgactttcc
tttcaattggtatcctggatcctgggtgcaatgccttgactaatcctgtc
agatactgattgttttgtggtgatgtgtgtgtagatgc
gaattcaccccagggcaggcaagctctgcaccatctcctgccttcctccc
aagatgatgggattttatagatgatggagcttgtccgtggtctatggatg
atgagggaggaccagacattctggggccatattggtgctcctagggtctt
tactatactttctccaaaaagtaaaaagcagtattagaaacagaaagaaa
ggtttgacagaaccttctttatttctttcctgtctttctttccattatag
ggaaagcaaaaaagctagcaaccagctctaataacatgtatgtcaaagtg
caaaatagatgtatatatgtaatatataaataatacatattaatagtgtc
ccttcatggcaaatcaggatctagctgaacagcagacttcttttcaaatg
ttcatagaatgtttatttttaaatgtacaaaaaattatttaataggctac
aaaatagctcagcaagttaatacaggtacaattcttataaatctgtttgg
agtaaaatagaattaaatgtaaaacctaatctagtaaataattctatatc
ctaggctagagagatagctcagcaggtaaaaggtgcttgatacacaatcc
tcatgatctgagttcaattcccaaagtccacacaaatatagcaaaagaga
accaacactcacaagctttcctctgatctacacacatacacaatgtgcac
ttgatagatcgagtgatagagcaatagagtaacagaccgagagactgaga
cagacagagagacagagagagagagagagagatatgctggtaaagtgaat
attggcatcatgtcacattttttcagataataggttggatgaggtaaagc
acatttttaacttacataaatatttcttatgatagctgttagacatctaa
aaatctgtccaatgaaataattatgcacgtaggcaaaaaatcagtgtcgt
ata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_101827958_101828899
seq2: B6Ng01-001M06.g_67_1006 (reverse)

seq1  TTTTTTGCCTACGTGCTTAATTATTTTCTTTGGACAGATTTTTAGATGTC  50
      |||||||||||||||| |||||| |||| |||||||||||||||||||||
seq2  TTTTTTGCCTACGTGCATAATTA-TTTCATTGGACAGATTTTTAGATGTC  49

seq1  TAACAGCTATCAAAAGAAATATTTATGTAAGTTAAAAATGTGCTTTACCT  100
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TAACAGCTATCATAAGAAATATTTATGTAAGTTAAAAATGTGCTTTACCT  99

seq1  CATCCAACTTATTATCTTGAAAAAATCTGACCTGATGCCAATATTCACTT  150
      |||||||| ||||||| ||||||||| |||| ||||||||||||||||||
seq2  CATCCAACCTATTATC-TGAAAAAATGTGACATGATGCCAATATTCACTT  148

seq1  TACCAGCATATCTCTCTCTCTCTCTCTCTGTCTCTCTGTCTGTCTCAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGCATATCTCTCTCTCTCTCTCTCTGTCTCTCTGTCTGTCTCAGTC  198

seq1  TCTCGGTCTGTTACTCTATTGCTCTATCACTCGATCTATCAAGTGCACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGGTCTGTTACTCTATTGCTCTATCACTCGATCTATCAAGTGCACAT  248

seq1  TGTGTATGTGTGTAGATCAGAGGAAAGCTTGTGAGTGTTGGTTCTCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATGTGTGTAGATCAGAGGAAAGCTTGTGAGTGTTGGTTCTCTTTT  298

seq1  GCTATATTTGTGTGGACTTTGGGAATTGAACTCAGATCATGAGGATTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATATTTGTGTGGACTTTGGGAATTGAACTCAGATCATGAGGATTGTG  348

seq1  TATCAAGCACCTTTTACCTGCTGAGCTATCTCTCTAGCCTAGGATATAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAGCACCTTTTACCTGCTGAGCTATCTCTCTAGCCTAGGATATAGA  398

seq1  ATTATTTACTAGATTAGGTTTTACATTTAATTCTATTTTACTCCAAACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTACTAGATTAGGTTTTACATTTAATTCTATTTTACTCCAAACAG  448

seq1  ATTTATAAGAATTGTACCTGTATTAACTTGCTGAGCTATTTTGTAGCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAAGAATTGTACCTGTATTAACTTGCTGAGCTATTTTGTAGCCTA  498

seq1  TTAAATAATTTTTTGTACATTTAAAAATAAACATTCTATGAACATTTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAATTTTTTGTACATTTAAAAATAAACATTCTATGAACATTTGAA  548

seq1  AAGAAGTCTGCTGTTCAGCTAGATCCTGATTTGCCATGAAGGGACACTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTCTGCTGTTCAGCTAGATCCTGATTTGCCATGAAGGGACACTAT  598

seq1  TAATATGTATTATTTATATATTACATATATACATCTATTTTGCACTTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATGTATTATTTATATATTACATATATACATCTATTTTGCACTTTGA  648

seq1  CATACATGTTATTAGAGCTGGTTGCTAGCTTTTCTGCTTTCCCTATAATG  700
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CATACATGTTATTAGAGCTGGTTGCTAGCTTTTTTGCTTTCCCTATAATG  698

seq1  GAAAGAAAGACAGGAAAGAAATAAAGAAGGTTCTGTCAAACCTTTCTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGACAGGAAAGAAATAAAGAAGGTTCTGTCAAACCTTTCTTTC  748

seq1  TGTTTCTAATACTGCTTTTTACTTTTTGGAGAAAGTATAGTAAAGACCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTAATACTGCTTTTTACTTTTTGGAGAAAGTATAGTAAAGACCCT  798

seq1  AGGAGCACCAATATGGCCCCAGAATGTCTGGTCCTCCCTCATCATCCATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCACCAATATGGCCCCAGAATGTCTGGTCCTCCCTCATCATCCATA  848

seq1  GACCACGGACAAGCTCCATCATCTATAAAATCCCATCATCTTGGGAGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACGGACAAGCTCCATCATCTATAAAATCCCATCATCTTGGGAGGAA  898

seq1  GGCAGGAGATGGTGCAGAGCTTGCCTGCCCTGTGGTGAATTC  942
      |||||||||||||||||||||||||||||||| |||||||||
seq2  GGCAGGAGATGGTGCAGAGCTTGCCTGCCCTGGGGTGAATTC  940