BAC Information

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BAC

Clone NameB6Ng01-002I22
Chromosome13 (Build37)
Map Location 44,105,634 - 44,264,410
singlet/doubletdoublet
Overlap geneA730030A06
Upstream genePhactr1, Tbc1d7, Gfod1, Sirt5, Nol7, Ranbp9, LOC637627, Ccdc90a, Rnf182, LOC100039403, Cd83, LOC100039432
Downstream geneEG637868, EG667157, Jarid2, Dtnbp1, Hsp25-ps1, LOC100039502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002I22.bB6Ng01-002I22.g
ACCDH840544DH840545
length1,179965
definitionDH840544|Mus musculus domesticus DNA, BAC clone: B6Ng01-002I22, 5' end.DH840545|Mus musculus domesticus DNA, BAC clone: B6Ng01-002I22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,105,634 - 44,106,823)(44,263,845 - 44,264,410)
sequence
gaattctttaaaacaagtctcttcaacagtcaagcacccactagttttgt
gtctacacaggatgctcgtctttcccaagcagcatgtgtgtaccagtctg
caggctttcctggtcatccctgcttccagctgttggctttcatgttgcta
cccccacaaacctctgaccctaccagcatcgtctttctctctacttccca
agagaaaccaagtcacaacattttgtgccttcactcacagtcacactatg
tcctcagaaagccaagggacagcccttgtcttggagatttgttgctgcaa
taaaacaccatgaccaaaaagcaagttggggaggaaagagtttatttggc
ttgcactttcagatcacagttcatctttggaggaattcaagacaggaact
catgcagggcaggaacctggaggcaggagccgatgcagaggtgatggaga
gctgctgctaactggcttgcttcgcatggcttgctcagcttgtgttctcc
cacctcaatcactaattgagaaaatgtcttacagctggatctcatggagg
cattttctcaactgaggctccttcctctccgatgactcttaaagtaagtc
aagttgacacacagaaccagccagtacagccatagcatctactgccctga
gtggcagggaaagaagaaatgtggggtggagacacaagaaaagaaggtca
aaagctaagagagatctggaagatgaataaaggaaattgactttctataa
atgtggggcgatgtcagatgtgaatgtttccttaagtagatcacctctct
agggctttgtgcaaagcgtagcttgcaaagataccaggtaggaaagcaag
cgaacagacagacgagtgctggtttgtctccatctgaaatgttatttccc
tttctctgtttaccgctgcctaaatgatcttacttagacaatgcacagaa
acaatgcttcttgcgtatgcttcaatatctgtctaactttatacaatctg
tgccctactttttttttttttttaataaagtgaaagacactggaagatct
ggctatctcactgcagaacatttcctcggttcttggctttttttttctac
aggagtaaccgggacatggatgtgaatgtgcatgacggattgtagtgtgt
ggacagcatgtcctacaggggcctgggaa
gaattctgaattgatctgccccaaaatctatgtcatgtgtgagcagttgg
gccattcctgctgatccaaaactgcaggatctccatgaggcagggcaata
caggatgatggggagaagtcctggtgagaatctgaagaccttgaaccaga
ccaatgactcattgcggtgagtatctgcaagtgaagatgtgtgggcagaa
ggttgtactgtgggacacactgacacaccacagcttcaacaagatttttt
tctatacttttgtgtatgtgtgtgctttattttgtgggaggggttgcaag
agcaaagggtgagggtggatatgagaggatggggagatgacgaggactgg
ggtacatgatgtgaaactcagaaagaatttaataaaaagtttaaaaaacc
aaaatataaaaaagaaagatacaagatttccaacccgacattcatgacca
tcatcatcatcaccacccgcatcaccatcattaccagcatcatcatcagc
atcatcgtcgtcgtcgtcatcttcatcatcgtaataaccatcagcactat
catcatctccattgatgtcattgtcatcatcatctggcagctccagggtc
atagaatcattatatcccccacactaacgtcttacagtgtgggtgactca
tctcatgggaatctggtattagttcagaagagaaaacttctgggtcttag
cagccaggaccatgaattcaacaactgaaaactgcgcacccaccatcata
cactcggccaaagctatcgtgagttttaggataacattaataaagttagc
ccgttgccatttgagcatgaacttcgtctagtaatcttgatcagcacacg
aagagaattgacaccacctgctgtgtagaaaataatctacgaggatcttt
tggtaacctgtcagtcgctcttcccgatgggcttgttcatagcaattaag
gatgtctatgagtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_44105634_44106823
seq2: B6Ng01-002I22.b_46_1224

seq1  GAATTCTTTAAAACAAGTCTCTTCAACAGTCAAGCACCCACTAGTTTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAAACAAGTCTCTTCAACAGTCAAGCACCCACTAGTTTTGT  50

seq1  GTCTACACAGGATGCTCGTCTTTCCCAAGCAGCATGTGTGTACCAGTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACACAGGATGCTCGTCTTTCCCAAGCAGCATGTGTGTACCAGTCTG  100

seq1  CAGGCTTTCCTGGTCATCCCTGCTTCCAGCTGTTGGCTTTCATGTTGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTTCCTGGTCATCCCTGCTTCCAGCTGTTGGCTTTCATGTTGCTA  150

seq1  CCCCCACAAACCTCTGACCCTACCAGCATCGTCTTTCTCTCTACTTCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACAAACCTCTGACCCTACCAGCATCGTCTTTCTCTCTACTTCCCA  200

seq1  AGAGAAACCAAGTCACAACATTTTGTGCCTTCACTCACAGTCACACTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACCAAGTCACAACATTTTGTGCCTTCACTCACAGTCACACTATG  250

seq1  TCCTCAGAAAGCCAAGGGACAGCCCTTGTCTTGGAGATTTGTTGCTGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGAAAGCCAAGGGACAGCCCTTGTCTTGGAGATTTGTTGCTGCAA  300

seq1  TAAAACACCATGACCAAAAAGCAAGTTGGGGAGGAAAGAGTTTATTTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACACCATGACCAAAAAGCAAGTTGGGGAGGAAAGAGTTTATTTGGC  350

seq1  TTGCACTTTCAGATCACAGTTCATCTTTGGAGGAATTCAAGACAGGAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACTTTCAGATCACAGTTCATCTTTGGAGGAATTCAAGACAGGAACT  400

seq1  CATGCAGGGCAGGAACCTGGAGGCAGGAGCCGATGCAGAGGTGATGGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGGGCAGGAACCTGGAGGCAGGAGCCGATGCAGAGGTGATGGAGA  450

seq1  GCTGCTGCTAACTGGCTTGCTTCGCATGGCTTGCTCAGCTTGTGTTCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGCTAACTGGCTTGCTTCGCATGGCTTGCTCAGCTTGTGTTCTCC  500

seq1  CACCTCAATCACTAATTGAGAAAATGTCTTACAGCTGGATCTCATGGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCAATCACTAATTGAGAAAATGTCTTACAGCTGGATCTCATGGAGG  550

seq1  CATTTTCTCAACTGAGGCTCCTTCCTCTCCGATGACTCTTAAAGTAAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTCAACTGAGGCTCCTTCCTCTCCGATGACTCTTAAAGTAAGTC  600

seq1  AAGTTGACACACAGAACCAGCCAGTACAGCCATAGCATCTACTGCCCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGACACACAGAACCAGCCAGTACAGCCATAGCATCTACTGCCCTGA  650

seq1  GTGGCAGGGAAAGAAGAAATGTGGGGTGGAGACACAAGAAAAGAAGGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGGGAAAGAAGAAATGTGGGGTGGAGACACAAGAAAAGAAGGTCA  700

seq1  AAAGCTAAGAGAGACCTGGAAGATGAATAAAGGAAATTGACTTTCTATAA  750
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAAGCTAAGAGAGATCTGGAAGATGAATAAAGGAAATTGACTTTCTATAA  750

seq1  ATGTGGGGCGATGTCAGATGTGAATGTTTCCTTAAGTAGATCACCTCCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||| | 
seq2  ATGTGGGGCGATGTCAGATGTGAATGTTTCCTTAAGTAGATCACCTCTCT  800

seq1  AGGGCTTTGTGCAAAGCGTAGCTTGCAAAGATACCAGGTAGGAAAGCAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTTGTGCAAAGCGTAGCTTGCAAAGATACCAGGTAGGAAAGCAAG  850

seq1  CGAACAGACAGACGAGTGCTGGTTTGTCTCCATCCCAAATGTTATTTCCC  900
      ||||||||||||||||||||||||||||||||||  ||||||||||||||
seq2  CGAACAGACAGACGAGTGCTGGTTTGTCTCCATCTGAAATGTTATTTCCC  900

seq1  TTTCTCTGTTTACCGCTGCCTAAATGATCTTACTTAGACAATGCACAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGTTTACCGCTGCCTAAATGATCTTACTTAGACAATGCACAGAA  950

seq1  ACAATGCTCCTTGCGTATGCTTCAATTATCTGTCTAACTTTTATACAATC  1000
      |||||||| |||||||||||||||| |||||||||||| |||||||||||
seq2  ACAATGCTTCTTGCGTATGCTTCAA-TATCTGTCTAAC-TTTATACAATC  998

seq1  TGTGCCCTACTTTTTTTTTTTTTTTAATAAAGTGAAAGAACACTGGAAGA  1050
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGTGCCCTACTTTTTTTTTTTTTTTAATAAAGTGAAAG-ACACTGGAAGA  1047

seq1  TCTTGGGCTATCTCACTGCAG-ACATTTCCCTCGGTTTCTTGGCTTTTTT  1099
      |||  |||||||||||||||| |||||| |||||| ||||||||||||||
seq2  TCT--GGCTATCTCACTGCAGAACATTT-CCTCGG-TTCTTGGCTTTTTT  1093

seq1  TTTCTACAGGAGTAACGGGGACCATTGGATGTG-ATGTGCATGACGGGAT  1148
      |||||||||||||||| |||||   |||||||| ||||||||||| ||||
seq2  TTTCTACAGGAGTAACCGGGAC--ATGGATGTGAATGTGCATGAC-GGAT  1140

seq1  GGTGATGTGTGGACAAGCATGGTCCCTACAAGGGGCTGGGAA  1190
       ||  ||||||||| ||||||   |||||| ||| |||||||
seq2  TGTAGTGTGTGGAC-AGCATG--TCCTACAGGGGCCTGGGAA  1179

seq1: chr13_44263845_44264410
seq2: B6Ng01-002I22.g_464_1030 (reverse)

seq1  CACTCCATAGACATCCTTAGCTGCTTTGAACAAGCCCATCGGG-AGAGCG  49
      |||| ||||||||||||||  |||| ||||||||||||||||| ||||||
seq2  CACT-CATAGACATCCTTAATTGCTATGAACAAGCCCATCGGGAAGAGCG  49

seq1  ACTGACAGGTTACCAAAAGGTCCTCGTAGATTATTTTCTACACAGCAGGT  99
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACTGACAGGTTACCAAAAGATCCTCGTAGATTATTTTCTACACAGCAGGT  99

seq1  GGTGTCAATTCTCTTCGTGTGCTGA-CCAGATTACTAGACGAAGTTCATG  148
      ||||||||||||||||||||||||| | ||||||||||||||||||||||
seq2  GGTGTCAATTCTCTTCGTGTGCTGATCAAGATTACTAGACGAAGTTCATG  149

seq1  CTCAAATGGCAAC-GGCTAACTTTATTATTGTTATCCTAAAACTCACGAT  197
      ||||||||||||| |||||||||||||| |||||||||||||||||||||
seq2  CTCAAATGGCAACGGGCTAACTTTATTAATGTTATCCTAAAACTCACGAT  199

seq1  AGCTTTGGCCGAGTGTATGATGGTGGGTGCGCAGTTTTCAGTTGTTGAAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGGCCGAGTGTATGATGGTGGGTGCGCAGTTTTCAGTTGTTGAAT  249

seq1  TCATGGTCCTGGCTGCTGAAGACCCAGAAGTCTTCTCTTCTGAACTAATA  297
      ||||||||||||||||| ||||||||||||| ||||||||||||||||||
seq2  TCATGGTCCTGGCTGCT-AAGACCCAGAAGTTTTCTCTTCTGAACTAATA  298

seq1  CCAGATTCCCATGAGATGAGTCACCCACACTGTAAGACGTTAGTGTGGGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATTCCCATGAGATGAGTCACCCACACTGTAAGACGTTAGTGTGGGG  348

seq1  GATATAATGATTCTATGACCCTGGAGCTGCCAGATGATGATGACAATGAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAATGATTCTATGACCCTGGAGCTGCCAGATGATGATGACAATGAC  398

seq1  ATCAATGGAGATGATGATAGTGCTGATGGTTATTACGATGATGAAGATGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGGAGATGATGATAGTGCTGATGGTTATTACGATGATGAAGATGA  448

seq1  CGACGACGACGATGATGCTGATGATGATGCTGGTAATGATGGTGATGCGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACGACGACGATGATGCTGATGATGATGCTGGTAATGATGGTGATGCGG  498

seq1  GTGGTGATGATGATGATGGTCATGAATGTCGGGTTGGAAATCTTGTATCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGATGATGATGATGGTCATGAATGTCGGGTTGGAAATCTTGTATCT  548

seq1  TTCTTTTTTATATTTTGGT  566
      |||||||||||||||||||
seq2  TTCTTTTTTATATTTTGGT  567