BAC Information

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BAC

Clone NameB6Ng01-003K19
Chromosome13 (Build37)
Map Location 87,578,353 - 87,579,496
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC675707
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003K19.bB6Ng01-003K19.g
ACCDH841311DH841312
length1,2721,122
definitionDH841311|Mus musculus domesticus DNA, BAC clone: B6Ng01-003K19, 5' end.DH841312|Mus musculus domesticus DNA, BAC clone: B6Ng01-003K19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctccttcgcctaggacgtgtcactccctgattggctgcagcccat
cggccgagttgacgtcacggggaaggcagagcacatggagtgaagaacca
ccctcggcacatgcgcagattatttgtttaccacttagaacacagctgtc
agcgccatcttgtaacggcgaatgtgggcgcggctcccaacatctccccc
tttccttttaataagagcaaataggccacccatattaatgagagtggaga
tagaggtcaaatccccagtgtgtaggtaaaggagccatgtacaggattag
ctcttaggctcacaggcttttacccagagcaaccctgacctgctcccgtg
tcgttttgcctgggggaagggaactaggacactgaaccttcatgaaagat
gacatgtctccctagaataggctcatatatgccgcagagcctttccattg
cagtgcttagccgtgcaactctctcgggctgctgaagcacactcactcta
tcctgtgcaatgagactagcctcgtgggatataagagctgagtggccagc
gacctattgcctaagcatagataaccatatatcagggggagcaccatgtt
ctagagctgcaagcgcctgggcaataaccaccttgtctctcctagtttag
gccttaagcttacagaccaatcaaagaagcaacactaatccacagcaaag
tgtatctccaaataatattaatcccacccattttttaaagaaagaaaatg
ctgaggagatccaattgggtaatcctttggtcagggacaggtccaagcgc
gtggagttgacctgaagtctcaattcccgaaaggatctgttcaaattcag
ccgtccaattctgtaacatatactgaaaaagacttttgacaaattagctg
tcctagtaaatttacatactgaatggaaataacacacaatcccggaactt
ttgttcacatcccagctgagtatttgtcataatacatctagtgtatctgg
acagatctatgagtggattaccagcatgagactcttctgtatcttgacat
tagctgaggcctgttaatctatgactggagtcacctgaggctgacaagtg
ttaatggggtcagtcgtcttggacttgttcagacagagtaaagctgtctt
gaatacaggctaatcagttcccggttagtggttaaaagtcgggaatcctg
accattaacctctcacgcatgtattgggcgacatgaaatgtggagtgctc
gtcgataatagtggatatccat
gaattccaaaatagaataaaggaccaaaagactgtaaggctaggaaaggg
gatgcagaaacaaccaattcgaaaaaaggataaaaaagtaataaattaat
ttgaaacattttcatgattattataaaatgtaaaaattgtgcattgtaac
gtaagtaatgggaaatgcagtaatagaagttcactttaagaagtaagcaa
tatgaggagttgtgatgctgtttggttttctttttccttctaaatcgtca
tgccaattttagggaagaacatgttatggcaaacaactataaaatagatg
atcatcagcttgtaacatagataattcagtattttcatctggtcttttta
cttgaaaatgtagattaaaaatagactattttagagaaactgtaggttca
ccagaaaatactgatttttctcacagttacaacgtgccaatataaacaca
gatcctcccattattaccttcatagggagatagttctcataattgatggg
atgcattgtcataactgtcattacaagtatatgatttgagtgaccgatta
tttcagctggtctacatactgtcagctttgtttattgtattatggagtat
atttaatattaaaattatgtttagtttaattttcatttcgttgctgttaa
agtactttgtattgtatagttaaatttcacctaatatttatttggaaatg
ttgaagaaaggagaaactacagggtaattactggggcattatctttaaaa
agaggaaaccaaatatgtgtgtttatttttgtttctgcctggaagagtgc
tgttccctttacagatgataactgaggttcaaaatggtttctaatacttg
tttaggccacatatactattgtccagggtcattgagtggagattaaagat
gtgtgtcaattccaagattccaggttattctgaatattttggtcctctct
aaatacgtgtccaacaccaaattatttccatgtagtatcttcagtatcat
gatgggttgcttctgaaccaatttaaaaggaaaagaaacttttacagtaa
cattattagctgaaacacttgcttcttaaaaatactttcactaatttata
taggattaattttatttagtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_87578353_87579496
seq2: B6Ng01-003K19.g_68_1189

seq1  GAATTCCAAAATAGAATAAAGGACCAAAAGACTGTAAGGCTAGGAAAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAATAGAATAAAGGACCAAAAGACTGTAAGGCTAGGAAAGGG  50

seq1  GATGCAGAAACAACCAATTCGAAAAAAGGATAAAAAAGTAATAAATTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGAAACAACCAATTCGAAAAAAGGATAAAAAAGTAATAAATTAAT  100

seq1  TTGAAACATTTTCATGATTATTATAAAATGTAAAAATTGTGCATTGTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACATTTTCATGATTATTATAAAATGTAAAAATTGTGCATTGTAAC  150

seq1  GTAAGTAATGGGAAATGCAGTAATAGAAGTTCACTTTAAGAAGTAAGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTAATGGGAAATGCAGTAATAGAAGTTCACTTTAAGAAGTAAGCAA  200

seq1  TATGAGGAGTTGTGATGCTGTTTGGTTTTCTTTTTCCTTCTAAATCGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGAGTTGTGATGCTGTTTGGTTTTCTTTTTCCTTCTAAATCGTCA  250

seq1  TGCCAATTTTAGGGAAGAACATGTTATGGCAAACAACTATAAAATAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAATTTTAGGGAAGAACATGTTATGGCAAACAACTATAAAATAGATG  300

seq1  ATCATCAGCTTGTAACATAGATAATTCAGTATTTTCATCTGGTCTTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCAGCTTGTAACATAGATAATTCAGTATTTTCATCTGGTCTTTTTA  350

seq1  CTTGAAAATGTAGATTAAAAATAGACTATTTTAGAGAAACTGTAGGTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAATGTAGATTAAAAATAGACTATTTTAGAGAAACTGTAGGTTCA  400

seq1  CCAGAAAATACTGATTTTTCTCACAGTTACAACGTGCCAATATAAACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAATACTGATTTTTCTCACAGTTACAACGTGCCAATATAAACACA  450

seq1  GATCCTCCCATTATTACCTTCATAGGGAGATAGTTCTCATAATTGATGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTCCCATTATTACCTTCATAGGGAGATAGTTCTCATAATTGATGGG  500

seq1  ATGCATTGTCATAACTGTCATTACAAGTATATGATTTGAGTGACCGATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTGTCATAACTGTCATTACAAGTATATGATTTGAGTGACCGATTA  550

seq1  TTTCAGCTGGTCTACATACTGTCAGCTTTGTTTATTGTATTATGGAGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCTGGTCTACATACTGTCAGCTTTGTTTATTGTATTATGGAGTAT  600

seq1  ATTTAATATTAAAATTATGTTTAGTTTAATTTTCATTTCGTTGCTGTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATATTAAAATTATGTTTAGTTTAATTTTCATTTCGTTGCTGTTAA  650

seq1  AGTACTTTGTATTGTATAGTTAAATTTCACCTAATATTTATTTGGAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTTGTATTGTATAGTTAAATTTCACCTAATATTTATTTGGAAATG  700

seq1  TTGAAGAAAGGAGAAACTACAGGGTAATTACTGGGGCATTATCTTTAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAAAGGAGAAACTACAGGGTAATTACTGGGGCATTATCTTTAAAA  750

seq1  AGAGGAAACCAAATATGTGTGTTTATTTTTGTTTCTGCCTGGAAGAGTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAACCAAATATGTGTGTTTATTTTTGTTTCTGCCTGGAAGAGTGC  800

seq1  TGTTCCCTTTACAGATGATAACTGAGGTTCAAAATGGTTTCTAATACTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCTTTACAGATGATAACTGAGGTTCAAAATGGTTTCTAATACTTG  850

seq1  TTTAGGCCACATATACTATTGTCCAGGGTCATTGAGTGGAGATTAAAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGCCACATATACTATTGTCCAGGGTCATTGAGTGGAGATTAAAGAT  900

seq1  GTGTGTCAATTCCAAGATTCCAGGTTATTCTGAAATATTTTGGTCCTCTC  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTGTGTCAATTCCAAGATTCCAGGTTATTCTG-AATATTTTGGTCCTCTC  949

seq1  TAAATACGTGTCCAAACACCAAATTATTTCCATGTAGTATCTTCAGTATC  1000
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TAAATACGTGTCC-AACACCAAATTATTTCCATGTAGTATCTTCAGTATC  998

seq1  ATGATGGGTTTGCTCTGAAAACCAAATTTAAAAAGAAAAAGAAAAACTTT  1050
      ||||||||||   ||||||   | ||||||||| ||||   | |||||||
seq2  ATGATGGGTTGCTTCTGAA---CCAATTTAAAAGGAAA---AGAAACTTT  1042

seq1  TACAAGTAACAATTTATTAGCTGAAAACAACTTTGCTTTCTTTAAAAAAA  1100
      ||| |||||||  |||||||||| |||||   |||| |||||   |||||
seq2  TAC-AGTAACA--TTATTAGCTG-AAACA--CTTGC-TTCTT---AAAAA  1082

seq1  TACTTTCACTAATTTTATAATTAGGAATTAATTTTTATTTGTAG  1144
      |||||||||||| ||||||  |||| |||||||||  || ||||
seq2  TACTTTCACTAA-TTTATA--TAGG-ATTAATTTTATTTAGTAG  1122