BAC Information

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BAC

Clone NameB6Ng01-004B10
Chromosome13 (Build37)9 (Build37)
Map Location 41,498,925 - 41,499,27383,988,807 - 83,988,912
singlet/doubletsingletsinglet
Overlap geneNedd9
Upstream geneLOC666894, LOC100039048, Tcfap2a, EG621629, EG637157, LOC100039105, Gcnt2, Pak1ip1, Tmem14c, Mak, EG621771, Gcm2, LOC637277, Elovl2, LOC268650, BC024659
Downstream geneEG621976, EG328231, 9530008L14Rik, LOC100039272, Hivep1, Edn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004B10.bB6Ng01-004B10.g
ACCDH841594DH841595
length576930
definitionDH841594|Mus musculus domesticus DNA, BAC clone: B6Ng01-004B10, 5' end.DH841595|Mus musculus domesticus DNA, BAC clone: B6Ng01-004B10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,498,925 - 41,499,273)(83,988,807 - 83,988,912)
sequence
ttaaaaaaattgaggagggatggccttttgggcattcctgctgtttgttg
tgtgtggaggaatgctttggtgtatggcatgtatgtgaaggttgtacagg
gatgataaacaacttagtaaagactatggcagtcttggaagcaggaacat
ccccccaaaactggctcaacatgctggttcagaaagcaaggacaggatag
agcctcacatgcacatatcaaccaaagacagtatggggaaagtgagttgt
cactacattgatgggtaaggatttggaatggatgggggtgacctaagaca
gatgctgatcacagttcaactaatacaacaaaaaggaggagatgcaggaa
gcaggtatggccacatgggcaagatggcgctctgaaacattgccaggccc
cgtgaacaccacacgtttactgccttgcccgaatgtgctcaatgaaactg
catatgtaagctgcctaccaagttaggttattcatagtgatcgggatctg
tcagcctatctgtgacagacctgagctcttgcccggttcatgcattgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgt
gaattcttgacctaatgagttaaaatttaaaaaaaaaaaaacctaaatat
aaaaatccttccttaagtaaatttacaaaccattttacaatttgatcaat
ctagttacagaacaaaccacttttatcaatggacatatcgtggaaacaga
aactaaatagggacacagtgaaactaacagaagttattaaacaaatggac
ttaatagatatctacagaatgttttatcctgaaacaaaaggatgtaactt
tttctcagcacatcattgtaccttctccaaaattgaccatataattggtc
ataaaacaggcctcaactgataaaaaatattgcaattgtccaaagcatcc
tatcagaccaccaaggacttaggatgattcatcttcaataacaacattaa
taatggaaagccaacacttatgttgaaaatgaacaacagtcttttcagtg
ataccttggtcaaggaagggatatagaaggaaattaaagacattttagag
tttaatgaaaataaagccacaacattccctaactaatgagactcaatgaa
atcattactaagagggaaactcatagatttgagtacctcaaaaaagaaac
cagagagagcacatacaagcagcttgagaacacatgaaaaatctccaaaa
taaaggaagcaaattcactcaagaggagtagatggaaggaaataatcaaa
ctcaggggtgaaattaaccaagtggaaacaagaggaactacttaaagaat
caaccaaagaggagctggttttttgagaaaatcaacaagatagataaacc
cttagctagcatcccttaaggcacagagacagcatcctaattaacaaaat
cagaattgaaaagggagacattaaaaacagatcctgaagaaatccaaaat
acaatctgatccttctataacacactatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_41498925_41499273
seq2: B6Ng01-004B10.b_594_628 (reverse)

seq1  ACACACACACACACACACACACACACACACA---CACACACACACAGACA  47
      |||||||||||||||||||||||||||||||   |               
seq2  ACACACACACACACACACACACACACACACAATGC---------------  35

seq1  CACACGCACCACATACCCATAATTCCAGGAAGATCACCACCTTGATCTAC  97
                                                        
seq2  --------------------------------------------------  35

seq1  ATAGTGAGCTCTAGGCCAGCTGGGACTACATAGTGAAATTTTGTTTCTAA  147
                                                        
seq2  --------------------------------------------------  35

seq1  AATGACCAGACAATAATAAGCACATTAAACATTATGATAACTAGCACCAA  197
                                                        
seq2  --------------------------------------------------  35

seq1  AAGACTGGTTACTTAAAAATGAAAAACGGGGTTATAAATAAATAGTGCCT  247
                                                        
seq2  --------------------------------------------------  35

seq1  CTCTACTTAGCTTTTACCAAAACAAGTCCATACAAAGGGATGGACTTTGC  297
                                                        
seq2  --------------------------------------------------  35

seq1  TTACAGCAAGGGCAGTCTGGATCATGACAAATGCCACACACACACACAAT  347
                                                        
seq2  --------------------------------------------------  35

seq1  GC  349
        
seq2  --  35

seq1: chr9_83988807_83988912
seq2: B6Ng01-004B10.g_67_176

seq1  GAATTCTTGACCTAATGAGTTAAAATT----AAAAAAAAAACCTAAATAT  46
      |||||||||||||||||||||||||||    |||||||||||||||||||
seq2  GAATTCTTGACCTAATGAGTTAAAATTTAAAAAAAAAAAAACCTAAATAT  50

seq1  AAAAATCCTTCCTTAAGTAAATTTACAAACCATTTTACAATTTGATCAAT  96
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCCTTCCTTAAGTAAATTTACAAACCATTTTACAATTTGATCAAT  100

seq1  CTAGTTACAG  106
      ||||||||||
seq2  CTAGTTACAG  110