BAC Information

Click to search

BAC

Clone NameB6Ng01-004B20
Chromosome13 (Build37)
Map Location 14,893,447 - 14,972,490
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039831, Gng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2, Tbce, Ggps1, LOC100040243, Arid4b, LOC100039916, Hecw1, Mrpl32, Psma2, AW209491
Downstream geneEG665099, LOC670994, EG625121, Gli3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004B20.bB6Ng01-004B20.g
ACCDH841613DH841614
length1,1611,171
definitionDH841613|Mus musculus domesticus DNA, BAC clone: B6Ng01-004B20, 5' end.DH841614|Mus musculus domesticus DNA, BAC clone: B6Ng01-004B20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,971,304 - 14,972,490)(14,893,447 - 14,894,632)
sequence
gaattcaacaattttttcctcatttccatcagtgatctctgtgtcatttc
attcattatctccttcccagtgcattcagttatttccttcctaatccaat
acgtgacttttttaattcaggaaataatcactgtcccacttcagccatca
ctgatcttactcctgggaatgactccttggaaatccagtgagaaatctcc
tttccaattaagcattgtttttcctaccacctcagccagtgatttccttc
cccaattcagcaggtggtcttctggttaattctgtcttgtctgtttcaat
tccttcaattttctccttcataatacagtcagcatagtcctcctgcttca
ttcagcattgtactccccatttcagtcagtgatctccttcccaactcaat
cagtcagtgaactcctccccatttcactcagtaacttcctctccagtggt
gttcttctcagttcagacattcttgtcccaatccagccaatgattctctt
caaaattcagtctattattacttctcagttcactcactgatctcctttct
tatgtaattaatagtttcattcccaattcaaccagtgatcttccaacttc
catgctcttcagattatagctacatttctgacttgctaagtgtcctccct
gtagtacttagaaggctccttagttttcttttgtacactcaggaaacagt
accaagagctttctcaagaagctaattatcttttccatgcaaaacaaaat
tgccgaattagctgcagcaactttctagcctctccttcaatacgatacat
aagaagcatgaagacatactatctgggtgggaaatttgcctcaactcaac
attctcattccagatggccacatgctacctgaatataaaacaaactgtaa
caggaaacctggatttagttacaagaaagactttgcatgtagcaaaaaga
atctggcatgaaagcaatcagtcagcaattttccaatctcagacagatga
tcctatatctacatgagcataagaatatagtgatgaaccctgcagtatgt
gtagagctcttctacgtgatgaactttagagcatttttttcttcccaatg
tcagcacttcttttcatgccatacttacttaacattgctcattgttacat
ctggaaacagg
gaattcaaatggtcaagccaccagcctctgatctgagctcgctccctctc
tccccactctgtgtgtgtgtctctctctgtgtctgtctctgtctctttct
gactctgtgtgtgtgtgtgtgtgtatgtgtgtctccccttagccccgagc
ctttgtgcacctctttccagccatccagacattttccatggttatgttcc
caaagccctagtcagagttgcagtgcctgatctttccctttctttggcca
ggaattggctccagaagataagcagactaagattttaacaacagaggcag
ttaagaaatgtctggtgtttggatgaaaaacaggatgcatgttccctcct
aaacttttctgtcagaggtgtaaggagattgtcaagtagataagaattta
tgctttggtatcagatagccctgtcactcactgctgtgctcagggtgagg
gacataaacactatgggaaaatgaagtattacataagattgctctaagac
caaaggtgagctaatttttgcaacatatttagaattatattagtacacag
tacagtaaatgttaagtgttactaatattacccccgattatactcttctt
tttgagctagttgcacacaggaatttgtccttctccttttactagagcag
tgttgcccaatacaagtataatacaagttacacatttactttagtaacca
cattaaaagtacggagaagcaaaaaaaaaaaaaaaaaaagtatgaagaaa
caggtaaaattaatttcaagaacatctttaaaacctcagataaaatattc
acttcaatatgaaatttagcatgcaattattgagcttttacacattctct
ttatatactgtttcagggataaatatgtattttcctaaaaagcatttcaa
ttcagaaaagctacatttttatgtttcaacagttctcatgcagcttcatt
gctaaaccattggacagatttatcacaagtagcacgagaatggaatactt
ctgacatttgaaagagatgtggcagaaaggaaaaggaagaattcttgagc
aataaggactctgatgacttagtttcaacatttattgattttttgtaagt
tttacatcatgagctaattcaatctatttctcattcctcaattctgccat
gcagaaaataaaagcaaaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_14971304_14972490
seq2: B6Ng01-004B20.b_45_1205 (reverse)

seq1  CCTGTTTTCCAGATGTAAACAATGAGCAAATGTTAAGTTAAAAGTATGGG  50
      |||| ||||||||||| |||||||||| ||||||||||   |||||| ||
seq2  CCTG-TTTCCAGATGT-AACAATGAGC-AATGTTAAGT---AAGTAT-GG  43

seq1  CATTGAAAAAAGAAGTGCTGACATTGGGAAAAGAAAAAAATGCTCTAAAG  100
      |||    |||||||||||||||||||||  ||||||||||||||||||||
seq2  CAT---GAAAAGAAGTGCTGACATTGGG--AAGAAAAAAATGCTCTAAAG  88

seq1  TTTCATCACCGTAGAAGAGCTCTAACACATTACTGCCAGGGTTTCATTCA  150
       ||||||| |||||||||||||| ||||| ||||| ||||| |||| |||
seq2  -TTCATCA-CGTAGAAGAGCTCT-ACACA-TACTG-CAGGG-TTCA-TCA  131

seq1  CTATATTCTTTATGCCTCATGTTAGATATAGGATCATTCTGTTCTTGAGA  200
      |||||||| ||||| |||||| |||||||||||||| |||||   |||||
seq2  CTATATTC-TTATG-CTCATG-TAGATATAGGATCA-TCTGT--CTGAGA  175

seq1  TTGGAAAATTGCTGACTGATTGCTTTCATGCCAGATTCTTTTTGCTACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAATTGCTGACTGATTGCTTTCATGCCAGATTCTTTTTGCTACAT  225

seq1  GCAAAGTCTTTTCTTGTAACTAAATCCAGGTTTCCTGTTACAGTTTGTTT  300
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGTC-TTTCTTGTAACTAAATCCAGGTTTCCTGTTACAGTTTGTTT  274

seq1  TATATTCAGGTAGCATGTGGCCATCTGGAATGAGAATGTTGAGTTGAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCAGGTAGCATGTGGCCATCTGGAATGAGAATGTTGAGTTGAGGC  324

seq1  AAATTTCCCACCCAGATAGTATGTCTTCATGCTTCTTATGTATCGTATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCCCACCCAGATAGTATGTCTTCATGCTTCTTATGTATCGTATTG  374

seq1  AAGGAGAGGCTAGAAAGTTGCTGCAGCTAATTCGGCAATTTTGTTTTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAGGCTAGAAAGTTGCTGCAGCTAATTCGGCAATTTTGTTTTGCA  424

seq1  TGGAAAAGATAATTAGCTTCTTGAGAAAGCTCTTGGTACTGTTTCCTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAGATAATTAGCTTCTTGAGAAAGCTCTTGGTACTGTTTCCTGAG  474

seq1  TGTACAAAAGAAAACTAAGGAGCCTTCTAAGTACTACAGGGAGGACACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAAAAGAAAACTAAGGAGCCTTCTAAGTACTACAGGGAGGACACTT  524

seq1  AGCAAGTCAGAAATGTAGCTATAATCTGAAGAGCATGGAAGTTGGAAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTCAGAAATGTAGCTATAATCTGAAGAGCATGGAAGTTGGAAGAT  574

seq1  CACTGGTTGAATTGGGAATGAAACTATTAATTACATAAGAAAGGAGATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGTTGAATTGGGAATGAAACTATTAATTACATAAGAAAGGAGATCA  624

seq1  GTGAGTGAACTGAGAAGTAATAATAGACTGAATTTTGAAGAGAATCATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGAACTGAGAAGTAATAATAGACTGAATTTTGAAGAGAATCATTG  674

seq1  GCTGGATTGGGACAAGAATGTCTGAACTGAGAAGAACACCACTGGAGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATTGGGACAAGAATGTCTGAACTGAGAAGAACACCACTGGAGAGG  724

seq1  AAGTTACTGAGTGAAATGGGGAGGAGTTCACTGACTGATTGAGTTGGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACTGAGTGAAATGGGGAGGAGTTCACTGACTGATTGAGTTGGGAA  774

seq1  GGAGATCACTGACTGAAATGGGGAGTACAATGCTGAATGAAGCAGGAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATCACTGACTGAAATGGGGAGTACAATGCTGAATGAAGCAGGAGGA  824

seq1  CTATGCTGACTGTATTATGAAGGAGAAAATTGAAGGAATTGAAACAGACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCTGACTGTATTATGAAGGAGAAAATTGAAGGAATTGAAACAGACA  874

seq1  AGACAGAATTAACCAGAAGACCACCTGCTGAATTGGGGAAGGAAATCACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAATTAACCAGAAGACCACCTGCTGAATTGGGGAAGGAAATCACT  924

seq1  GGCTGAGGTGGTAGGAAAAACAATGCTTAATTGGAAAGGAGATTTCTCAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGGTGGTAGGAAAAACAATGCTTAATTGGAAAGGAGATTTCTCAC  974

seq1  TGGATTTCCAAGGAGTCATTCCCAGGAGTAAGATCAGTGATGGCTGAAGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTCCAAGGAGTCATTCCCAGGAGTAAGATCAGTGATGGCTGAAGT  1024

seq1  GGGACAGTGATTATTTCCTGAATTAAAAAAGTCACGTATTGGATTAGGAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGTGATTATTTCCTGAATTAAAAAAGTCACGTATTGGATTAGGAA  1074

seq1  GGAAATAACTGAATGCACTGGGAAGGAGATAATGAATGAAATGACACAGA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAACTGAATGCACTGGGAAGGAGATAATGAATGAAATGACACAGA  1124

seq1  GATCACTGATGGAAATGAGGAAAAAATTGTTGAATTC  1187
      |||||||||||||||||||||||||||||||||||||
seq2  GATCACTGATGGAAATGAGGAAAAAATTGTTGAATTC  1161

seq1: chr13_14893447_14894632
seq2: B6Ng01-004B20.g_68_1238

seq1  GAATTCAAATGGTCAAGCCACCAGCCTCTGATCTGAGCTCGCTCCCTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATGGTCAAGCCACCAGCCTCTGATCTGAGCTCGCTCCCTCTC  50

seq1  TCCCCACTCTGTGTGTGTGTCTCTCTCTGTGTCTGTCTCTGTCTCTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACTCTGTGTGTGTGTCTCTCTCTGTGTCTGTCTCTGTCTCTTTCT  100

seq1  GACTCTGTGTGTGTGTGTGTGTGTATGTGTGTCTCCCCTTAGCCCCGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGTGTGTGTGTGTGTGTGTATGTGTGTCTCCCCTTAGCCCCGAGC  150

seq1  CTTTGTGCACCTCTTTCCAGCCATCCAGACATTTTCCATGGTTATGTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGCACCTCTTTCCAGCCATCCAGACATTTTCCATGGTTATGTTCC  200

seq1  CAAAGCCCTAGTCAGAGTTGCAGTGCCTGATCTTTCCCTTTCTTTGGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCCTAGTCAGAGTTGCAGTGCCTGATCTTTCCCTTTCTTTGGCCA  250

seq1  GGAATTGGCTCCAGAAGATAAGCAGACTAAGATTTTAACAACAGAGGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTGGCTCCAGAAGATAAGCAGACTAAGATTTTAACAACAGAGGCAG  300

seq1  TTAAGAAATGTCTGGTGTTTGGATGAAAAACAGGATGCATGTTCCCTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAATGTCTGGTGTTTGGATGAAAAACAGGATGCATGTTCCCTCCT  350

seq1  AAACTTTTCTGTCAGAGGTGTAAGGAGATTGTCAAGTAGATAAGAATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTTCTGTCAGAGGTGTAAGGAGATTGTCAAGTAGATAAGAATTTA  400

seq1  TGCTTTGGTATCAGATAGCCCTGTCACTCACTGCTGTGCTCAGGGTGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGGTATCAGATAGCCCTGTCACTCACTGCTGTGCTCAGGGTGAGG  450

seq1  GACATAAACACTATGGGAAAATGAAGTATTACATAAGATTGCTCTAAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAAACACTATGGGAAAATGAAGTATTACATAAGATTGCTCTAAGAC  500

seq1  CAAAGGTGAGCTAATTTTTGCAACATATTTAGAATTATATTAGTACACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTGAGCTAATTTTTGCAACATATTTAGAATTATATTAGTACACAG  550

seq1  TACAGTAAATGTTAAGTGTTACTAATATTACCCCCGATTATACTCTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTAAATGTTAAGTGTTACTAATATTACCCCCGATTATACTCTTCTT  600

seq1  TTTGAGCTAGTTGCACACAGGAATTTGTCCTTCTCCTTTTACTAGAGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGCTAGTTGCACACAGGAATTTGTCCTTCTCCTTTTACTAGAGCAG  650

seq1  TGTTGCCCAATACAAGTATAATACAAGTTACACATTTACTTTAGTAACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCCCAATACAAGTATAATACAAGTTACACATTTACTTTAGTAACCA  700

seq1  CATTAAAAGTACGGAGAAGCAAAAAAAAAAAAAAAAAAAGTATGAAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAAGTACGGAGAAGCAAAAAAAAAAAAAAAAAAAGTATGAAGAAA  750

seq1  CAGGTAAAATTAATTTCAAGAACATCTTTAAAACCTCAGATAAAATATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAAAATTAATTTCAAGAACATCTTTAAAACCTCAGATAAAATATTC  800

seq1  ACTTCAATATGAAATTTAGCATGCAATTATTGAGCTATTACACATTCTCT  850
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACTTCAATATGAAATTTAGCATGCAATTATTGAGCTTTTACACATTCTCT  850

seq1  TTATATACTGTTTCAGGGATAAATATGTA-TTTCCT-AAAAGCATTTCAA  898
      ||||||||||||||||||||||||||||| |||||| |||||||||||||
seq2  TTATATACTGTTTCAGGGATAAATATGTATTTTCCTAAAAAGCATTTCAA  900

seq1  TTCAGAAAAGCTACA-TTTTATGTTTCAACAG-TCTCATGCAGC-TCATT  945
      ||||||||||||||| |||||||||||||||| ||||||||||| |||||
seq2  TTCAGAAAAGCTACATTTTTATGTTTCAACAGTTCTCATGCAGCTTCATT  950

seq1  GCTAAACCATTGGACAGATTTATCACAAGTAGCACGAGAATGGAATACTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAACCATTGGACAGATTTATCACAAGTAGCACGAGAATGGAATACTT  1000

seq1  CTTGACATTTGAAAGAGATGTGGGCAGAAAGGAAAAAGGAAGAAAATCCT  1045
      | ||||||||||||||||||| |||||||||| ||||||||| || || |
seq2  C-TGACATTTGAAAGAGATGT-GGCAGAAAGG-AAAAGGAAG-AATTCTT  1046

seq1  GAGCACAATAAAGGACTCTGATGACTTAAGTTTTCAAACATTTTATTGAT  1095
      |||  |||| ||||||||||||||||| |||||   |||| |||||||| 
seq2  GAG--CAAT-AAGGACTCTGATGACTT-AGTTT--CAACA-TTTATTGA-  1088

seq1  TTTTTTGTAAGTTTCACATCATGAACCCTAATCCCACTCATTTCCCCATC  1145
      |||||||||||||| |||||||||   |||||  || ||  || | ||| 
seq2  TTTTTTGTAAGTTTTACATCATGA--GCTAAT-TCAATCTATTTCTCAT-  1134

seq1  TCTTCATATCTGCCACTGCAAAGAAAATAAAAAGCAAAAAT  1186
      || |||  ||||||| |||  ||||||| ||||||||||||
seq2  TCCTCAATTCTGCCA-TGC--AGAAAAT-AAAAGCAAAAAT  1171