BAC Information

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BAC

Clone NameB6Ng01-004L03
Chromosome13 (Build37)
Map Location 38,501,398 - 38,657,410
singlet/doubletdoublet
Overlap geneBmp6, Txndc5
Upstream geneLy86, LOC100042794, LOC100042800, LOC100042802, LOC100041624, Rreb1, Ssr1, Cage1, Riok1, Dsp, 6530403A03Rik
Downstream geneMuted, Eef1e1, LOC621102, Slc35b3, EG666867, LOC100041779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004L03.bB6Ng01-004L03.g
ACCDH842036DH842037
length1,155708
definitionDH842036|Mus musculus domesticus DNA, BAC clone: B6Ng01-004L03, 5' end.DH842037|Mus musculus domesticus DNA, BAC clone: B6Ng01-004L03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,656,239 - 38,657,410)(38,501,398 - 38,502,105)
sequence
gaattcttgtccccaggttgcaaggcagacagtcctgagttctccctttt
tctacacccttgttaatggttgatttctgtgttagagaatacactccaca
ctcttggacgttggactttcattttccaggactccatctgttttgtgcta
ttcttgtgtgctttatttttttccttgctctcccgaccaagaggtttctt
tcttgggcaagcctctttctgctttatgtaaggattcttcataagactag
aatgcctggggtctcagaactgctttgaatgtaacctggtataaaattgt
ccttattagagctgttgggatgctgtggggagcttgcctctagagcctcc
tgaatcgggtacctactcgttagaggcagcttttaaaaactgtggtaaaa
ttggtcttgttcctcatctttaacgtgcagcccagctgttgcatgatgta
caacagtatgctgttgtacgattaccaccctctattctcagaactctttc
attttgaaaattgaaaatctaccccttaattctaacttcctacctgaccc
agaactgaggataaactcagggccttgtttgtaaggcagacactctgcca
ttgaactagatccccaaaccctaattctgtttcttagtcctctctctctc
gacctctgtatccataactcttatttctgttaatagctctgtgaatccac
tgactgctacatcttcagatgtgtagtggccacacagtgtttagattttc
tatccagaagactcaatatgtgatggaatgtttctgtcctcataattttg
acaggcttcatccatggaaacatcacgcctgtggcaaaggttgtttcatg
actgacaaagttctttattgaaatctggtgttttatgttcatcagttcag
aagccatgttttctgtttcagtgactatattgactgtgctaccatttagc
tagctacagactgttcatactttactaaaccttctgggttgttttagaaa
tgagaaaacattaggagtttgctttttattagttgtccagaaactcagat
ctttcaactcgacttcttacgcttgtccaagagctgctggctctgaagag
actatgcgacatgtgagactggcatgaccatgaagtgacagtccttctgt
aaccc
gaattcttgttgtgtgctacagatggtttatagtttatttccaaacagct
gtttttcccttctttagtctgtttttcttttatttatttctttttccttt
tttttttcttttttgcccccaataaaatccttccggaaaccattcagctc
gcatccttggcgaagtgctttgcagaagccttcaggttccctgtcacggt
tacactcttgccagcacctgttgctagggccactcgatttagcaggttgc
tgtttggaaagctagacattcagtggatgtgtgtcaaaactgcagcctca
actgccctagaacagagcagcccccagcgatgagtagccccttcctgctg
tttcatgagagtgtagaaagtggagattacagggtgctgcactcatgatt
gacagccagctcatcagagcatcatgtaggaaagccccctttgtagattt
ttggtcctgagtttgaaggaagtagtttcttaaaggtaccctgctttggc
attccctttagtctttgccaacaactagctgtccctgacctttaagagat
atggacaggaggaggaattgagacccacagataatccttaaatcttgtta
atggttttcacatccttagctacgatcattttccccagagctgcccccat
ggtgctaaatggctagtttaaatgcagtctctacttgtcctccccccccc
cccccccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_38656239_38657410
seq2: B6Ng01-004L03.b_47_1201 (reverse)

seq1  GGGTCACAGAAAGGCCTGTCCACTTCATGGTCTATGCCCAGTTCTCACAT  50
      |||| |||| |||| |||| |||||||||||| ||| |||| ||||||||
seq2  GGGTTACAG-AAGGACTGT-CACTTCATGGTC-ATG-CCAG-TCTCACAT  45

seq1  TGTTCGCAGTGGGTCTCTTCAGAG-CAGCAGGCTCTTGGGACCAGCGTAA  99
         |||||    |||||||||||| ||||| |||||| |||| |||||||
seq2  --GTCGCA--TAGTCTCTTCAGAGCCAGCA-GCTCTT-GGACAAGCGTAA  89

seq1  G-AGTCGAGTTG-AAGATTCCTGAGTTTTCTGGACAACTATATAAAAGCA  147
      | |||||||||| |||||  ||||| ||||||||||||||   |||||||
seq2  GAAGTCGAGTTGAAAGAT--CTGAG-TTTCTGGACAACTAATAAAAAGCA  136

seq1  AACTCCCTAATGTTTTCTCAATTTCCAAAAACAACCAGAAGGTTTAGTAA  197
      |||| |||||||||||||| ||||| ||||  | ||||||||||||||||
seq2  AACT-CCTAATGTTTTCTC-ATTTCTAAAACAACCCAGAAGGTTTAGTAA  184

seq1  AGTTATGAACAGTCTGTAGCTAGCTAAATGGTAGCACAGTCAATATAGTC  247
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AG-TATGAACAGTCTGTAGCTAGCTAAATGGTAGCACAGTCAATATAGTC  233

seq1  ACTGAAACAGAAAACATGGCCTTCTGAACTGATGAACATAAAAACACCAG  297
      ||||||||||||||||||| ||||||||||||||||||| ||||||||||
seq2  ACTGAAACAGAAAACATGG-CTTCTGAACTGATGAACAT-AAAACACCAG  281

seq1  ATTTCAATAAAGAAACTTTGTCAGTCATGAAACAACCTTTGCCACAGGCC  347
      |||||||||||| |||||||||||||||||||||||||||||||||||| 
seq2  ATTTCAATAAAG-AACTTTGTCAGTCATGAAACAACCTTTGCCACAGGCG  330

seq1  TGATGTTTCCATGGATGAAGCCTGTCAAAATTATGAGGACAGAAACATTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTTCCATGGATGAAGCCTGTCAAAATTATGAGGACAGAAACATTC  380

seq1  CATCACATATTGAGTCTTCTGGATAGAAAATCTAAACACTGTGTGGCCAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACATATTGAGTCTTCTGGATAGAAAATCTAAACACTGTGTGGCCAC  430

seq1  TACACATCTGAAGATGTAGCAGTCAGTGGATTCACAGAGCTATTAACAGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATCTGAAGATGTAGCAGTCAGTGGATTCACAGAGCTATTAACAGA  480

seq1  AATAAGAGTTATGGATACAGAGGTCGAGAGAGAGAGGACTAAGAAACAGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAGTTATGGATACAGAGGTCGAGAGAGAGAGGACTAAGAAACAGA  530

seq1  ATTAGGGTTTGGGGATCTAGTTCAATGGCAGAGTGTCTGCCTTACAAACA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGGTTTGGGGATCTAGTTCAATGGCAGAGTGTCTGCCTTACAAACA  580

seq1  AGGCCCTGAGTTTATCCTCAGTTCTGGGTCAGGTAGGAAGTTAGAATTAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTGAGTTTATCCTCAGTTCTGGGTCAGGTAGGAAGTTAGAATTAA  630

seq1  GGGGTAGATTTTCAATTTTCAAAATGAAAGAGTTCTGAGAATAGAGGGTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTAGATTTTCAATTTTCAAAATGAAAGAGTTCTGAGAATAGAGGGTG  680

seq1  GTAATCGTACAACAGCATACTGTTGTACATCATGCAACAGCTGGGCTGCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCGTACAACAGCATACTGTTGTACATCATGCAACAGCTGGGCTGCA  730

seq1  CGTTAAAGATGAGGAACAAGACCAATTTTACCACAGTTTTTAAAAGCTGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTAAAGATGAGGAACAAGACCAATTTTACCACAGTTTTTAAAAGCTGC  780

seq1  CTCTAACGAGTAGGTACCCGATTCAGGAGGCTCTAGAGGCAAGCTCCCCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAACGAGTAGGTACCCGATTCAGGAGGCTCTAGAGGCAAGCTCCCCA  830

seq1  CAGCATCCCAACAGCTCTAATAAGGACAATTTTATACCAGGTTACATTCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCCCAACAGCTCTAATAAGGACAATTTTATACCAGGTTACATTCA  880

seq1  AAGCAGTTCTGAGACCCCAGGCATTCTAGTCTTATGAAGAATCCTTACAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTTCTGAGACCCCAGGCATTCTAGTCTTATGAAGAATCCTTACAT  930

seq1  AAAGCAGAAAGAGGCTTGCCCAAGAAAGAAACCTCTTGGTCGGGAGAGCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGAAAGAGGCTTGCCCAAGAAAGAAACCTCTTGGTCGGGAGAGCA  980

seq1  AGGAAAAAAATAAAGCACACAAGAATAGCACAAAACAGATGGAGTCCTGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAAAATAAAGCACACAAGAATAGCACAAAACAGATGGAGTCCTGG  1030

seq1  AAAATGAAAGTCCAACGTCCAAGAGTGTGGAGTGTATTCTCTAACACAGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAAGTCCAACGTCCAAGAGTGTGGAGTGTATTCTCTAACACAGA  1080

seq1  AATCAACCATTAACAAGGGTGTAGAAAAAGGGAGAACTCAGGACTGTCTG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAACCATTAACAAGGGTGTAGAAAAAGGGAGAACTCAGGACTGTCTG  1130

seq1  CCTTGCAACCTGGGGACAAGAATTC  1172
      |||||||||||||||||||||||||
seq2  CCTTGCAACCTGGGGACAAGAATTC  1155

seq1: chr13_38501398_38502105
seq2: B6Ng01-004L03.g_68_775

seq1  GAATTCTTGTTGTGTGCTACAGATGGTTTATAGTTTATTTCCAAACAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTTGTGTGCTACAGATGGTTTATAGTTTATTTCCAAACAGCT  50

seq1  GTTTTTCCCTTCTTTAGTCTGTTTTTCTTTTATTTATTTCTTTTTCCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCCCTTCTTTAGTCTGTTTTTCTTTTATTTATTTCTTTTTCCTTT  100

seq1  TTTTTTTCTTTTTTGCCCCCAATAAAATCCTTCCGGAAACCATTCAGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTTTTTTGCCCCCAATAAAATCCTTCCGGAAACCATTCAGCTC  150

seq1  GCATCCTTGGCGAAGTGCTTTGCAGAAGCCTTCAGGTTCCCTGTCACGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTTGGCGAAGTGCTTTGCAGAAGCCTTCAGGTTCCCTGTCACGGT  200

seq1  TACACTCTTGCCAGCACCTGTTGCTAGGGCCACTCGATTTAGCAGGTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTCTTGCCAGCACCTGTTGCTAGGGCCACTCGATTTAGCAGGTTGC  250

seq1  TGTTTGGAAAGCTAGACATTCAGTGGATGTGTGTCAAAACTGCAGCCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGAAAGCTAGACATTCAGTGGATGTGTGTCAAAACTGCAGCCTCA  300

seq1  ACTGCCCTAGAACAGAGCAGCCCCCAGCGATGAGTAGCCCCTTCCTGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCCTAGAACAGAGCAGCCCCCAGCGATGAGTAGCCCCTTCCTGCTG  350

seq1  TTTCATGAGAGTGTAGAAAGTGGAGATTACAGGGTGCTGCACTCATGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGAGAGTGTAGAAAGTGGAGATTACAGGGTGCTGCACTCATGATT  400

seq1  GACAGCCAGCTCATCAGAGCATCATGTAGGAAAGCCCCCTTTGTAGATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCAGCTCATCAGAGCATCATGTAGGAAAGCCCCCTTTGTAGATTT  450

seq1  TTGGTCCTGAGTTTGAAGGAAGTAGTTTCTTAAAGGTACCCTGCTTTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCCTGAGTTTGAAGGAAGTAGTTTCTTAAAGGTACCCTGCTTTGGC  500

seq1  ATTCCCTTTAGTCTTTGCCAACAACTAGCTGTCCCTGACCTTTAAGAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTTTAGTCTTTGCCAACAACTAGCTGTCCCTGACCTTTAAGAGAT  550

seq1  ATGGACAGGAGGAGGAATTGAGACCCACAGATAATCCTTAAATCTTGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACAGGAGGAGGAATTGAGACCCACAGATAATCCTTAAATCTTGTTA  600

seq1  ATGGTTTTCACATCCTTAGCTACGATCATTTTCCCCAGAGCTGCCCCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTTCACATCCTTAGCTACGATCATTTTCCCCAGAGCTGCCCCCAT  650

seq1  GGTGCTAAATGGCTAGTTTAAATGCAGTCTCTACTTGTCCTCCCCCCCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTAAATGGCTAGTTTAAATGCAGTCTCTACTTGTCCTCCCCCCCCC  700

seq1  CCCCCCCC  708
      ||||||||
seq2  CCCCCCCC  708