BAC Information

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BAC

Clone NameB6Ng01-006O18
Chromosome13 (Build37)
Map Location 47,103,522 - 47,216,578
singlet/doubletdoublet
Overlap geneLOC544928, Nhlrc1, Tpmt, Aof1, Dek
Upstream geneENSMUSG00000062282, Gm1574, Rbm24, Cap2, C78339, Nup153, Kif13a
Downstream geneLOC100039761, Ibrdc2, 4931429P17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006O18.bB6Ng01-006O18.g
ACCDH843646DH843647
length1,057571
definitionDH843646|Mus musculus domesticus DNA, BAC clone: B6Ng01-006O18, 5' end.DH843647|Mus musculus domesticus DNA, BAC clone: B6Ng01-006O18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,103,522 - 47,104,583)(47,216,003 - 47,216,578)
sequence
gaattcatttgtaatcatcagtttggtttaaagaacacagcatggaagac
agaatttacatcgacatcacaaggctgctgacttgaggatgcttggaatg
aagaacagctgaagtgttccgtataacagactcacgggaagatctgccct
agacacttcctgctgtgtaccctgacccaccctactcccaagaaagacaa
gccgccacaaagtaccaggttacagtcgtcacatctccagcgtagtccag
cactgcgccacaaacctacacctgactctccattgcagacatccaagtgc
ctatatgctctcttaactaaacaaaacaagcacataggctgtagagtaaa
agatgaaactaatgggctgaagagatggctcagtggttaagagcactggc
tactcttccagaggaccaaggttcaattctcagcacccaaatgacagttc
acaattgtctgtaactcctgttctagaggacctgacaccctcacacagac
atacatgcaggcaaaataccactgctcatgaaataaaaataaattaaaaa
aaattttttacttaaaaaaatttaaatatgtgataatttaaaaaaaaatt
ttttttcaggttagagtataatcaccgagttccctctgtgcaaccaccca
acttctaggaaagagagagcaaggagagagagactggacttttgatcgaa
gactcaatggaatgggggcagtgtgtgggtccacatgatttctcaagtct
tccttctgcacagtcgttagactaacgcccaggtttgtgctatgagtgag
ccagccctgtgcaggcggctgcactgattgttctcgtgagtgtttataca
aaataatcatctcatcttcatttagtttataaacatgcacagtgctgccc
cttttaaattgaggagagaaaagaaagaagacagaaaaaccacacaaata
ctgcaagtagaaaaatacaaagaaaaaaaaagctactttcgggtttggca
cataaaaaggatgagacatagagcagaggtggccctggcccggtcatcag
tgtgtga
actttgtagaccagcctggccttgaactcagagatcagcctgcttctgcc
tcacaggtgctgggatcaaaggttggctccaccacagccagccagcgatg
tcagatttttatctgagaaaaactatgagctgtgggaagagaatgaatgg
gaatgagagatggggtggggtacagaaggtatctagaagggacatttaaa
gccctgaatattgacatataagtcctcctgctgtggagaaatccaatttc
ggtcccatgagggagaaggctccgggtagaaaaaaaaaatcaccaaacaa
caaaggtaaagagaaattagagagaaaatggctttaaaacgatcttaggc
tgggcgtggtagccttaacccgggcactcaggaggcagaggcaggctgtg
atttgaagccaacctggtctacaaaacatgtaccaggagagccagagcta
cacagagaaaccctgtctcaaaaacaaaacaagaaaacaaaaacagcctg
gtataaattctgttgtgtagttactaaagttcactcttatgaagagcatt
tttaatgaaaagaagaaagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_47103522_47104583
seq2: B6Ng01-006O18.b_49_1105

seq1  GAATTCATTTGTAATCATCAGTTTGGTTTAAAGAACACAGCATGGAAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGTAATCATCAGTTTGGTTTAAAGAACACAGCATGGAAGAC  50

seq1  AGAATTTACATCGACATCACAAGGCTGCTGACTTGAGGATGCTTGGAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTACATCGACATCACAAGGCTGCTGACTTGAGGATGCTTGGAATG  100

seq1  AAGAACAGCTGAAGTGTTCCGTATAACAGACTCACGGGAAGATCTGCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAGCTGAAGTGTTCCGTATAACAGACTCACGGGAAGATCTGCCCT  150

seq1  AGACACTTCCTGCTGTGTACCCTGACCCACCCTACTCCCAAGAAAGACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTTCCTGCTGTGTACCCTGACCCACCCTACTCCCAAGAAAGACAA  200

seq1  GCCGCCACAAAGTACCAGGTTACAGTCGTCACATCTCCAGCGTAGTCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCCACAAAGTACCAGGTTACAGTCGTCACATCTCCAGCGTAGTCCAG  250

seq1  CACTGCGCCACAAACCTACACCTGACTCTCCATTGCAGACATCCAAGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCGCCACAAACCTACACCTGACTCTCCATTGCAGACATCCAAGTGC  300

seq1  CTATATGCTCTCTTAACTAAACAAAACAAGCACATAGGCTGTAGAGTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATGCTCTCTTAACTAAACAAAACAAGCACATAGGCTGTAGAGTAAA  350

seq1  AGATGAAACTAATGGGCTGAAGAGATGGCTCAGTGGTTAAGAGCACTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAACTAATGGGCTGAAGAGATGGCTCAGTGGTTAAGAGCACTGGC  400

seq1  TACTCTTCCAGAGGACCAAGGTTCAATTCTCAGCACCCAAATGACAGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTCCAGAGGACCAAGGTTCAATTCTCAGCACCCAAATGACAGTTC  450

seq1  ACAATTGTCTGTAACTCCTGTTCTAGAGGACCTGACACCCTCACACAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTGTCTGTAACTCCTGTTCTAGAGGACCTGACACCCTCACACAGAC  500

seq1  ATACATGCAGGCAAAATACCACTGCTCATGAAATAAAAATAAATTAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGCAGGCAAAATACCACTGCTCATGAAATAAAAATAAATTAAAAA  550

seq1  AAATTTTTTACTTAAAAAAATTTAAATATGTGATAATTTAAAAAAAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTTACTTAAAAAAATTTAAATATGTGATAATTTAAAAAAAAATT  600

seq1  TTTTTTCAGGTTAGAGTATAATCACCGAGTTCCCTCTGTGCAACCACCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCAGGTTAGAGTATAATCACCGAGTTCCCTCTGTGCAACCACCCA  650

seq1  ACTTCTAGGAAAGAGAGAGCAAGGAGAGAGAGACTGGACTTTTGATCGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTAGGAAAGAGAGAGCAAGGAGAGAGAGACTGGACTTTTGATCGAA  700

seq1  GACTCAATGGAATGGGGGCAGTGTGTGGGTCCACATGATTTCTCAAGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAATGGAATGGGGGCAGTGTGTGGGTCCACATGATTTCTCAAGTCT  750

seq1  TCCTTCTGCACAGTCGTTAGACTAACGCCCAGGTTTGTGCTATGAGTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTGCACAGTCGTTAGACTAACGCCCAGGTTTGTGCTATGAGTGAG  800

seq1  CCAGCCCTGTGCAGGCGGCTGCACTGATTGTTCTCGTGAGTGTTTATACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCTGTGCAGGCGGCTGCACTGATTGTTCTCGTGAGTGTTTATACA  850

seq1  AAATAATCATCTCATCTTCATTTAGTTTATAAACATGCACAGTGCTGCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATCATCTCATCTTCATTTAGTTTATAAACATGCACAGTGCTGCCC  900

seq1  CTTTTAAATTGAGGAGAGAAAAGAAAGAAAGACAGAAAAACCACACAAAT  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTTTTAAATTGAGGAGAGAAAAGAAAG-AAGACAGAAAAACCACACAAAT  949

seq1  ACTGCAAAGTAGAAAAATACAAAGAAAAAAAAAGCTACTTTCGGTTTTGG  1000
      ||||| |||||||||||||||||||||||||||||||||||||| |||||
seq2  ACTGC-AAGTAGAAAAATACAAAGAAAAAAAAAGCTACTTTCGGGTTTGG  998

seq1  CAACATTAAAAAGGATGAGACATAGAGCAGAGGTGGCCCTGGCCCGGTCA  1050
      | ||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  C-ACA-TAAAAAGGATGAGACATAGAGCAGAGGTGGCCCTGGCCCGGTCA  1046

seq1  TCAGGTGTGTGA  1062
      ||| ||||||||
seq2  TCA-GTGTGTGA  1057

seq1: chr13_47216003_47216578
seq2: B6Ng01-006O18.g_66_642 (reverse)

seq1  AGCTTTCTTCTTTTCATT-AAAATGCTCTTCATAAGAGTGAACTTTAGTA  49
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGCTTTCTTCTTTTCATTAAAAATGCTCTTCATAAGAGTGAACTTTAGTA  50

seq1  ACTACACAACAGAATTTATACCAGGCTGTTTTTGTTTTCTTGTTTTGTTT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACACAACAGAATTTATACCAGGCTGTTTTTGTTTTCTTGTTTTGTTT  100

seq1  TTGAGACAGGGTTTCTCTGTGTAGCTCTGGCTCTCCTGGTACATGTTTTG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACAGGGTTTCTCTGTGTAGCTCTGGCTCTCCTGGTACATGTTTTG  150

seq1  TAGACCAGGTTGGCTTCAAATCACAGCCTGCCTCTGCCTCCTGAGTGCCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAGGTTGGCTTCAAATCACAGCCTGCCTCTGCCTCCTGAGTGCCC  200

seq1  GGGTTAAGGCTACCACGCCCAGCCTAAGATCGTTTTAAAGCCATTTTCTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTAAGGCTACCACGCCCAGCCTAAGATCGTTTTAAAGCCATTTTCTC  250

seq1  TCTAATTTCTCTTTACCTTTGTTGTTTGGTGATTTTTTTTTTCTACCCGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTTCTCTTTACCTTTGTTGTTTGGTGATTTTTTTTTTCTACCCGG  300

seq1  AGCCTTCTCCCTCATGGGACCGAAATTGGATTTCTCCACAGCAGGAGGAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCTCCCTCATGGGACCGAAATTGGATTTCTCCACAGCAGGAGGAC  350

seq1  TTATATGTCAATATTCAGGGCTTTAAATGTCCCTTCTAGATACCTTCTGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGTCAATATTCAGGGCTTTAAATGTCCCTTCTAGATACCTTCTGT  400

seq1  ACCCCACCCCATCTCTCATTCCCATTCATTCTCTTCCCACAGCTCATAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCACCCCATCTCTCATTCCCATTCATTCTCTTCCCACAGCTCATAGT  450

seq1  TTTTCTCAGATAAAAATCTGACATCGCTGGCTGGCTGTGGTGGAGCCAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCAGATAAAAATCTGACATCGCTGGCTGGCTGTGGTGGAGCCAAC  500

seq1  CTTTGATCCCAGCACCTGTGAGGCAGAAGCAGGCTGATCTCTGAGTTCAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATCCCAGCACCTGTGAGGCAGAAGCAGGCTGATCTCTGAGTTCAA  550

seq1  GGCCAGGCTGGTCTACAAAGTGAATTC  576
      |||||||||||||||||||||||||||
seq2  GGCCAGGCTGGTCTACAAAGTGAATTC  577