BAC Information

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BAC

Clone NameB6Ng01-006P20
Chromosome13 (Build37)
Map Location 47,006,416 - 47,202,237
singlet/doubletdoublet
Overlap geneKif13a, LOC544928, Nhlrc1, Tpmt, Aof1, Dek
Upstream geneAtxn1, 5033430I15Rik, ENSMUSG00000062282, Gm1574, Rbm24, Cap2, C78339, Nup153
Downstream geneLOC100039761, Ibrdc2, 4931429P17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006P20.bB6Ng01-006P20.g
ACCDH843693DH843694
length1,149734
definitionDH843693|Mus musculus domesticus DNA, BAC clone: B6Ng01-006P20, 5' end.DH843694|Mus musculus domesticus DNA, BAC clone: B6Ng01-006P20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,006,416 - 47,007,565)(47,201,508 - 47,202,237)
sequence
gaattcctggtttcatgactttgcctagagcttaattctctcccataagt
tcctggataaacctcaagcgaaagctgccatgcagaccgtgcagtcagta
aacctttacaatgtgaactcctgccaaacactgcgtgaccttttggctga
ataaccatcacttatgtcatggagtgctaagcagtggcagcctctgcctg
tcggcccaaagcagtgattgtcagtgggattaggctctagagctacgttt
gtactgccatgttccggctagctcggtgcgggagagcgtgccaaacatgc
acacacacggccctggatccaaccccccagtactgccgagagctcaggga
ggcacagtaaccagccttccacattgctatgatcccaaaagccacacgac
agcacggagtccattattatgtaataatctaatgcagaaattagaggctt
caggaggcccacactaagatgaagaaccgcagtgacagtctgaggaccgc
cccaccgcagacctgtggtcccaggcacagcatcggcagggcttactgta
ctccatcacaaagcatctagaaagggcatatgatggaggaaacggaaagc
agaagagactctctctgccagcagttctaggaggggactcttctcttaaa
gaatgggttactgtctttaactctcaagtaacagggcttggctgagggat
ggagcgatattcaaataaatgggtgcataggtttttagtggcactaaaac
tctactcactattcccatgtgactctactgctgacctgagtataaaaaat
tcagcaaataagggactcaaggggagaggttcccgtcgctaacctccctg
gtcaccgctgccaacgatcccactgggtaaatcaatgattacagtttgat
taattttgttttgacagccagtcgtcaaagctgacaactgtgggaggcat
acaagctcatttacctccataccgccatagcttctcctctcagaatccgg
ccatgcgaacacagccacgagtcccccacatgaatcatgctggaccagat
tctgaccagctttggattggctgctaatttaagcctttctcctttctgga
tttgaacccaaggttcctaggcatactgcgagccaccttatctggttca
gaattcttgacaggagagtgtggctggacaaataccgtatctgcattata
ggggagaccaagggggctagagaaaggaagagggtgaatctgtctaacat
tcaccggtttgaaacctatttatgtcgctggtggtgtgagcacttaacgt
ggtgggtccctgtcacggtgcagcgtaccggcgacgggaagcctcgcaag
taggtctcatttggaagccttcatctcgaacgacccctcggaaacaaacg
tggtggctccgaatcaaccccgtccgcggggtgatcgccgcgtgaagtcg
agtcgagaaagacttcggcggatccctcaacttcgtcacctccagacgct
ccccggctccgcggcccaggacggccggtcatttttctcccgggatcggg
aggctggaagctcgcaggccccctagcgtccaaccgttcagcgcggaggc
cccggctcgcgcccgcccgccaccccgtgcacccacccagccacccgccg
gacgccgcgacccgggtcctcccgcggaccgcagaccccccgagaccccg
cccgggcagcccgcgagagacgccgccgccccgcctcccgcccgccctcc
cgcgcgcgccaactcccagcgccgcgcgctgattggccggcgccttcccg
ctctgcttcccgaaccgccatttttgaaaatcttgttgattctgaaggat
cggtgaagagagagagtgcgagagagtagcgagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_47006416_47007565
seq2: B6Ng01-006P20.b_48_1196

seq1  GAATTCCTGGTTTCATGACTTTGCCTAGAGCTTAATTCTCTCCCATAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGTTTCATGACTTTGCCTAGAGCTTAATTCTCTCCCATAAGT  50

seq1  TCCTGGATAAACCTCAAGCGAAAGCTGCCATGCAGACCGTGCAGTCAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGATAAACCTCAAGCGAAAGCTGCCATGCAGACCGTGCAGTCAGTA  100

seq1  AACCTTTACAATGTGAACTCCTGCCAAACACTGCGTGACCTTTTGGCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTACAATGTGAACTCCTGCCAAACACTGCGTGACCTTTTGGCTGA  150

seq1  ATAACCATCACTTATGTCATGGAGTGCTAAGCAGTGGCAGCCTCTGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCATCACTTATGTCATGGAGTGCTAAGCAGTGGCAGCCTCTGCCTG  200

seq1  TCGGCCCAAAGCAGTGATTGTCAGTGGGATTAGGCTCTAGAGCTACGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCCCAAAGCAGTGATTGTCAGTGGGATTAGGCTCTAGAGCTACGTTT  250

seq1  GTACTGCCATGTTCCGGCTAGCTCGGTGCGGGAGAGCGTGCCAAACATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGCCATGTTCCGGCTAGCTCGGTGCGGGAGAGCGTGCCAAACATGC  300

seq1  ACACACACGGCCCTGGATCCAACCCCCCAGTACTGCCGAGAGCTCAGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACGGCCCTGGATCCAACCCCCCAGTACTGCCGAGAGCTCAGGGA  350

seq1  GGCACAGTAACCAGCCTTCCACATTGCTATGATCCCAAAAGCCACACGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGTAACCAGCCTTCCACATTGCTATGATCCCAAAAGCCACACGAC  400

seq1  AGCACGGAGTCCATTATTATGTAATAATCTAATGCAGAAATTAGAGGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGGAGTCCATTATTATGTAATAATCTAATGCAGAAATTAGAGGCTT  450

seq1  CAGGAGGCCCACACTAAGATGAAGAACCGCAGTGACAGTCTGAGGACCGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGCCCACACTAAGATGAAGAACCGCAGTGACAGTCTGAGGACCGC  500

seq1  CCCACCGCAGACCTGTGGTCCCAGGCACAGCATCGGCAGGGCTTACTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCGCAGACCTGTGGTCCCAGGCACAGCATCGGCAGGGCTTACTGTA  550

seq1  CTCCATCACAAAGCATCTAGAAAGGGCATATGATGGAGGAAACGGAAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCACAAAGCATCTAGAAAGGGCATATGATGGAGGAAACGGAAAGC  600

seq1  AGAAGAGACTCTCTCTGCCAGCAGTTCTAGGAGGGGACTCTTCTCTTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGACTCTCTCTGCCAGCAGTTCTAGGAGGGGACTCTTCTCTTAAA  650

seq1  GAATGGGTTACTGTCTTTAACTCTCAAGTAACAGGGCTTGGCTGAGGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGGTTACTGTCTTTAACTCTCAAGTAACAGGGCTTGGCTGAGGGAT  700

seq1  GGAGCGATATTCAAATAAATGGGTGCATAGGTTTTTAGTGGCACTAAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCGATATTCAAATAAATGGGTGCATAGGTTTTTAGTGGCACTAAAAC  750

seq1  TCTACTCACTATTCCCATGTGACTCTACTGCTGACCTGAGTATAAAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTCACTATTCCCATGTGACTCTACTGCTGACCTGAGTATAAAAAAT  800

seq1  TCAGCAAATAAGGGACTCAAGGGGAGAGGTTCCCGTCGCTAACCTCCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAAATAAGGGACTCAAGGGGAGAGGTTCCCGTCGCTAACCTCCCTG  850

seq1  GTCACCGCTGCCAACGATCCCACTGGGTAAATCAATGATTACAGTTTGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCGCTGCCAACGATCCCACTGGGTAAATCAATGATTACAGTTTGAT  900

seq1  TAATTTTGTTTTGACAGCCAGTCGTCAAAGCTGACAAACTGTGGGAGGCA  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TAATTTTGTTTTGACAGCCAGTCGTCAAAGCTGAC-AACTGTGGGAGGCA  949

seq1  TACAAGCTCATTTACCTCCATACCGCCATAGGCTCTCCTCTCAGAATCCG  1000
      |||||||||||||||||||||||||||||||  |||||||||||||||||
seq2  TACAAGCTCATTTACCTCCATACCGCCATAGCTTCTCCTCTCAGAATCCG  999

seq1  GCCATGCGAACACAGCCACGAGTCCCCCACATGAATCATGCCTGGACCAG  1050
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCCATGCGAACACAGCCACGAGTCCCCCACATGAATCATG-CTGGACCAG  1048

seq1  ATTCTGACCAGCTTT-GATTGGCTGCTAATTTAAGGCTTTCT-CTTTCT-  1097
      ||||||||||||||| ||||||||||||||||||| |||||| |||||| 
seq2  ATTCTGACCAGCTTTGGATTGGCTGCTAATTTAAGCCTTTCTCCTTTCTG  1098

seq1  GATTTGAAACCCAAGGTCACCTAAGGCATACTGC-AGCCACCTTACTCT-  1145
      |||||| ||||||||||  ||| ||||||||||| |||||||||| ||| 
seq2  GATTTG-AACCCAAGGT-TCCT-AGGCATACTGCGAGCCACCTTA-TCTG  1144

seq1  GTTCA  1150
      |||||
seq2  GTTCA  1149

seq1: chr13_47201508_47202237
seq2: B6Ng01-006P20.g_72_805 (reverse)

seq1  GCTCGCT-CTCTCTCGCGCTCTCTCTC-TCCCCGCTCC-TCAGAATCAAC  47
      ||||||| ||||||||| ||||||||| || ||| ||| |||||||||||
seq2  GCTCGCTACTCTCTCGCACTCTCTCTCTTCACCGATCCTTCAGAATCAAC  50

seq1  AAGATTTTC-AAAATGGCGGTTCGGGAAGCAGAGCGGGAAGGCGCCGGCC  96
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTCAAAAATGGCGGTTCGGGAAGCAGAGCGGGAAGGCGCCGGCC  100

seq1  AATCAGCGCGCGGCGCTGGGAGTTGGCGCGCGCGGGAGGGCGGGCGGGAG  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGCGCGCGGCGCTGGGAGTTGGCGCGCGCGGGAGGGCGGGCGGGAG  150

seq1  GCGGGGCGGCGGCGTCTCTCGCGGGCTGCCCGGGCGGGGTCTCGGGGGGT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGGCGGCGGCGTCTCTCGCGGGCTGCCCGGGCGGGGTCTCGGGGGGT  200

seq1  CTGCGGTCCGCGGGAGGACCCGGGTCGCGGCGTCCGGCGGGTGGCTGGGT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGGTCCGCGGGAGGACCCGGGTCGCGGCGTCCGGCGGGTGGCTGGGT  250

seq1  GGGTGCACGGGGTGGCGGGCGGGCGCGAGCCGGGGCCTCCGCGCTGAACG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCACGGGGTGGCGGGCGGGCGCGAGCCGGGGCCTCCGCGCTGAACG  300

seq1  GTTGGACGCTAGGGGGCCTGCGAGCTTCCAGCCTCCCGATCCCGGGAGAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGACGCTAGGGGGCCTGCGAGCTTCCAGCCTCCCGATCCCGGGAGAA  350

seq1  AAATGACCGGCCGTCCTGGGCCGCGGAGCCGGGGAGCGTCTGGAGGTGAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACCGGCCGTCCTGGGCCGCGGAGCCGGGGAGCGTCTGGAGGTGAC  400

seq1  GAAGTTGAGGGATCCGCCGAAGTCTTTCTCGACTCGACTTCACGCGGCGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGAGGGATCCGCCGAAGTCTTTCTCGACTCGACTTCACGCGGCGA  450

seq1  TCACCCCGCGGACGGGGTTGATTCGGAGCCACCACGTTTGTTTCCGAGGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCCGCGGACGGGGTTGATTCGGAGCCACCACGTTTGTTTCCGAGGG  500

seq1  GTCGTTCGAGATGAAGGCTTCCAAATGAGACCTACTTGCGAGGCTTCCCG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTTCGAGATGAAGGCTTCCAAATGAGACCTACTTGCGAGGCTTCCCG  550

seq1  TCGCCGGTACGCTGCACCGTGACAGGGACCCACCACGTTAAGTGCTCACA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCGGTACGCTGCACCGTGACAGGGACCCACCACGTTAAGTGCTCACA  600

seq1  CCACCAGCGACATAAATAGGTTTCAAACCGGTGAATGTTAGACAGATTCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGCGACATAAATAGGTTTCAAACCGGTGAATGTTAGACAGATTCA  650

seq1  CCCTCTTCCTTTCTCTAGCCCCCTTGGTCTCCCCTATAATGCAGATACGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTCCTTTCTCTAGCCCCCTTGGTCTCCCCTATAATGCAGATACGG  700

seq1  TATTTGTCCAGCCACACTCTCCTGTCAAGAATTC  730
      ||||||||||||||||||||||||||||||||||
seq2  TATTTGTCCAGCCACACTCTCCTGTCAAGAATTC  734