BAC Information

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BAC

Clone NameB6Ng01-007I20
Chromosome13 (Build37)
Map Location 43,712,695 - 43,813,372
singlet/doubletdoublet
Overlap geneRnf182
Upstream genePhactr1, Tbc1d7, Gfod1, Sirt5, Nol7, Ranbp9, LOC637627, Ccdc90a
Downstream geneLOC100039403, Cd83, LOC100039432, A730030A06, EG637868, EG667157
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007I20.bB6Ng01-007I20.g
ACCDH844085DH844086
length1,0871,039
definitionDH844085|Mus musculus domesticus DNA, BAC clone: B6Ng01-007I20, 5' end.DH844086|Mus musculus domesticus DNA, BAC clone: B6Ng01-007I20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,712,695 - 43,713,794)(43,812,346 - 43,813,372)
sequence
gaattctgggtattgtagctacaggaggtgccatcccagagtgattattt
aatatcccccaacccccttgggattccaacacctgttagcttgctgattg
ctgggttcctaagcttgttctcatgtgccaacaattttgagtaatgccac
ttcattataagcctgtattggaaactaaaggatttacactgcagtaattt
tcagattatttccacagttgttttgaaaccgagtttttacctgctgcgcg
gctcacagatgctgtactaaatactccttgatgaaggcaatgaaacacta
gcctgattcgaatgaagtagagcggggtggagaagagaagcagaggagga
gaatcatcagctttttctcatttcagcccgagaggcagtcagaccatcaa
aaaaccgaaggcgcattacatagtcacagaatgtagttgcttggtactaa
aaatacaatttgagttctttctaaggtaccaggagtgcagctttatttag
ctctttgtcagcaatcctaacattcaagtacaaggactctgtacgtgtag
ctatatgaaacccacactgggaattctagcctgggcagttgtggctcaca
attagagtgttgaagcatagagctgcttagtgttacgatggcaagataag
ggctcctgtttgcaggtacaagattcaatagtttggcgtcttcaaacagc
accattttctttttcttccttccaaaataaaacaagtaaacagaaataaa
cagctacagattgaatgcactgactgcttaactgtattaggtggcttaca
gaaacgtggtctcactattacatatatcactggcttcctggactcttgag
ttaccaccagggctaaagccaccatgggttaagggacagctgtactattg
tagtaggaaatgcaaaaaacataccttagggacttggaacttgactcaga
tcagccacttggggaagcaagtatgcccttaggtgtgaaagattggtcac
atcttcttcagatctcaggtggcctgtaattttatgcagatcttgttaaa
gtctgaattttacaagaaactgcttagttttggtcta
gaattcctctcccaagatctgctggaaagatgctacataagaaaacaaaa
aacacctggcagtagtggcgcacgtctttactccctgcacttgggaggca
gaggcaggcagatttctgagttcaaggccaccctggtctacagagtgagt
tccaggacagccagggctacacagagaaaccctgtctcaaaaaaaacaaa
aaataaataaaaataaaaaaattaaaaaaactaacaaagaaaacaaaaac
caaccaaccaaccaaacaaacaaaaaaccagtcccagctgaggctgggca
gcctgcactggccctagctaaattctatgtgttatagagagtatgaaccc
agatatgtagggaggtatcaggaacaatatgcaaatgaattatggtagtg
tgagaagattaaacccacacaaagaaaacatggccttgcagttagaagaa
aggcacatcgcagctccctggaagtaacaggtcgagcaggggacacatag
ctgtgtgtgcttagcctgaagtttccatcagaagacaagaaaagggactt
acctagatctccctggttttccagctctgaggtagaaggtgaagcgtttt
agcagggattcgaataacatttttctcaggttaaaacagaagttatatac
agggctagaaagatggcttagcaagagagcctggcgtcctgagtccggat
ccctgaaatccacgtaaaatccaggcacagtagcaagtacctaggttgcc
agcttagggggacagagatcctgggggctcactggtcagccagttgcttc
aagctcagtgagggactcttgtctcaaaaatcaaggtgtgagaagcattt
gaggaagacaacactaatatcaactctcaggcattcacttctgcctcggt
gtaggcgaatcagaccatcccaacacatagttgaaggataaaaacataaa
taacatccggtatggccctctacgtttggtgtggcatggaagtgaaaggg
aacacattgctttccctccctcctgtgtctgtgtcaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_43712695_43713794
seq2: B6Ng01-007I20.b_45_1131

seq1  GAATTCTGGGTATTGTAGCTACAGGAGGTGCCATCCCAGAGTGATTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGTATTGTAGCTACAGGAGGTGCCATCCCAGAGTGATTATTT  50

seq1  AATATCCCCCAACCCCCTTGGGATTCCAACACCTGTTAGCTTGCTGATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCCCCAACCCCCTTGGGATTCCAACACCTGTTAGCTTGCTGATTG  100

seq1  CTGGGTTCCTAAGCTTGTTCTCATGTGCCAACAATTTTGAGTAATGCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTCCTAAGCTTGTTCTCATGTGCCAACAATTTTGAGTAATGCCAC  150

seq1  TTCATTATAAGCCTGTATTGGAAACTAAAGGATTTACACTGCAGTAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTATAAGCCTGTATTGGAAACTAAAGGATTTACACTGCAGTAATTT  200

seq1  TCAGATTATTTCCACAGTTGTTTTGAAACCGAGTTTTTACCTGCTGCGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTATTTCCACAGTTGTTTTGAAACCGAGTTTTTACCTGCTGCGCG  250

seq1  GCTCACAGATGCTGTACTAAATACTCCTTGATGAAGGCAATGAAACACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACAGATGCTGTACTAAATACTCCTTGATGAAGGCAATGAAACACTA  300

seq1  GCCTGATTCGAATGAAGTAGAGCGGGGTGGAGAAGAGAAGCAGAGGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGATTCGAATGAAGTAGAGCGGGGTGGAGAAGAGAAGCAGAGGAGGA  350

seq1  GAATCATCAGCTTTTTCTCATTTCAGCCCGAGAGGCAGTCAGACCATCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATCAGCTTTTTCTCATTTCAGCCCGAGAGGCAGTCAGACCATCAA  400

seq1  AAAACCGAAGGCGCATTACATAGTCACAGAATGTAGTTGCTTGGTACTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCGAAGGCGCATTACATAGTCACAGAATGTAGTTGCTTGGTACTAA  450

seq1  AAATACAATTTGAGTTCTTTCTAAGGTACCAGGAGTGCAGCTTTATTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAATTTGAGTTCTTTCTAAGGTACCAGGAGTGCAGCTTTATTTAG  500

seq1  CTCTTTGTCAGCAATCCTAACATTCAAGTACAAGGACTCTGTACGTGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGTCAGCAATCCTAACATTCAAGTACAAGGACTCTGTACGTGTAG  550

seq1  CTATATGAAACCCACACTGGGAATTCTAGCCTGGGCAGTTGTGGCTCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATGAAACCCACACTGGGAATTCTAGCCTGGGCAGTTGTGGCTCACA  600

seq1  ATTAGAGTGTTGAAGCATAGAGCTGCTTAGTGTTACGATGGCAAGATAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAGTGTTGAAGCATAGAGCTGCTTAGTGTTACGATGGCAAGATAAG  650

seq1  GGCTCCTGTTTGCAGGTACAAGATTCAATAGTTTGGCGTCTTCAAACAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTGTTTGCAGGTACAAGATTCAATAGTTTGGCGTCTTCAAACAGC  700

seq1  ACCATTTTCTTTTTCTTCCTTCCAAAATAAAACAAGTAAACAGAAATAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTTCTTTTTCTTCCTTCCAAAATAAAACAAGTAAACAGAAATAAA  750

seq1  CAGCTACAGATTGAATGCACTGACTGCTTAACTGTATTAGGTGGCTTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTACAGATTGAATGCACTGACTGCTTAACTGTATTAGGTGGCTTACA  800

seq1  GAAACGTGGTCTCACTATTACATATATCACTGGCTTCCTGGACTCTTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACGTGGTCTCACTATTACATATATCACTGGCTTCCTGGACTCTTGAG  850

seq1  TTACCACCAGGGCTAAAGCCACCATGGGTAAGGGGACAGCTGTACTATTG  900
      ||||||||||||||||||||||||||||| | ||||||||||||||||||
seq2  TTACCACCAGGGCTAAAGCCACCATGGGTTAAGGGACAGCTGTACTATTG  900

seq1  TAGTAGGAAATGCAAAAAACATACCTTAGGGACTTGGAACTTGACTCAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGGAAATGCAAAAAACATACCTTAGGGACTTGGAACTTGACTCAGA  950

seq1  TCAGCCACTTGGGGGAAGCAAGTATGCCCTTAGGTGTGAAAGATTGGTCA  1000
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCACTT-GGGGAAGCAAGTATGCCCTTAGGTGTGAAAGATTGGTCA  999

seq1  CATC-TCTTCAAGATTCTCAAGGGTGCCTGTTATTTTATTGCAGATCCTG  1049
      |||| ||||| ||| |||| |||  |||||| |||||| |||||||| ||
seq2  CATCTTCTTC-AGA-TCTC-AGGTGGCCTGTAATTTTA-TGCAGATCTTG  1045

seq1  GTTTAAAAGTCTGAATTTTACAAAGAAAAACTGGCCTTAGTTTTTGGTCT  1099
         | |||||||||||||||||   | ||||||  ||||| |||||||||
seq2  ---TTAAAGTCTGAATTTTACA---AGAAACTG--CTTAG-TTTTGGTCT  1086

seq1  A  1100
      |
seq2  A  1087

seq1: chr13_43812346_43813372
seq2: B6Ng01-007I20.g_69_1107 (reverse)

seq1  GATTGACACAGACACAGGA-GGAGGAAAGGCAATGGTGTTCCC-TTCACT  48
      ||||||||||||||||||| ||||| || ||||| |||||||| ||||||
seq2  GATTGACACAGACACAGGAGGGAGGGAAAGCAAT-GTGTTCCCTTTCACT  49

seq1  ACCATGCCACA-CAAACCTACGAGGCCATACCCGATGTTATTTATG-TTT  96
       |||||||||| ||||| ||   ||||||||| ||||||||||||| |||
seq2  TCCATGCCACACCAAACGTAGAGGGCCATACCGGATGTTATTTATGTTTT  99

seq1  TAT-CTTCAACTATGTGTTGGGATGGTCTG-CTCGCCTACAC--GGGCAT  142
      ||| ||||||||||||||||||||||||||  ||||||||||   |||| 
seq2  TATCCTTCAACTATGTGTTGGGATGGTCTGATTCGCCTACACCGAGGCAG  149

seq1  GAGTGGATGCCTGAG-GTTGATATTGGTG-TGTCTTCCTCAAATGCTTCT  190
       |||| ||||||||| ||||||||| ||| ||||||||||||||||||||
seq2  AAGTGAATGCCTGAGAGTTGATATTAGTGTTGTCTTCCTCAAATGCTTCT  199

seq1  CACACCTTGATTTTTGAGAC-AGGGTCCCTCACTGAGCCTGAAGCAACTG  239
      |||||||||||||||||||| || |||||||||||||| |||||||||||
seq2  CACACCTTGATTTTTGAGACAAGAGTCCCTCACTGAGCTTGAAGCAACTG  249

seq1  GCTGACCAGTGAGCCCCCAGGATCTCTGTCCCCCTAAGCTGGCAACCTAG  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACCAGTGAGCCCCCAGGATCTCTGTCCCCCTAAGCTGGCAACCTAG  299

seq1  GTACTTGCTACTGTGCCTGGATTTTACGTGGATTTCAGGGATCCGGACTC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTGCTACTGTGCCTGGATTTTACGTGGATTTCAGGGATCCGGACTC  349

seq1  AGGACGCCAGGCTCTCTTGCTAAGCCATCTTTCTAGCCCTGTATATAACT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACGCCAGGCTCTCTTGCTAAGCCATCTTTCTAGCCCTGTATATAACT  399

seq1  TCTGTTTTAACCTGAG-AAAATGTTATTCGAATCCCTGCTAAAACGCTTC  438
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCTGTTTTAACCTGAGAAAAATGTTATTCGAATCCCTGCTAAAACGCTTC  449

seq1  ACCTTCTACCTCAGAGCTGG-AAACCAGGGAGATCTAGGTAAGTCCCTTT  487
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACCTTCTACCTCAGAGCTGGAAAACCAGGGAGATCTAGGTAAGTCCCTTT  499

seq1  TCTTGTCTTCTGATGGAAACTTCAGGCTAAGCACACACAGCTATGTGTCC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCTTCTGATGGAAACTTCAGGCTAAGCACACACAGCTATGTGTCC  549

seq1  CCTGCTCGACCTGTTACTTCCAGGGAGCTGCGATGTGCCTTTCTTCTAAC  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCGACCTGTTACTTCCAGGGAGCTGCGATGTGCCTTTCTTCTAAC  599

seq1  TGCAAGGCCATGTTTTCTTTGTGTGGGTTTAATCTTCTCACACTACCATA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGCCATGTTTTCTTTGTGTGGGTTTAATCTTCTCACACTACCATA  649

seq1  ATTCATTTGCATATTGTTCCTGATACCTCCCTACATATCTGGGTTCATAC  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTGCATATTGTTCCTGATACCTCCCTACATATCTGGGTTCATAC  699

seq1  TCTCTATAACACATAGAATTTAGCTAGGGCCAGTGCAGGCTGCCCAGCCT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATAACACATAGAATTTAGCTAGGGCCAGTGCAGGCTGCCCAGCCT  749

seq1  CAGCTGGGACTGGTTTTTTGTTTGTTTGGTTGGTTGGTTGGTTTTTGTTT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGGACTGGTTTTTTGTTTGTTTGGTTGGTTGGTTGGTTTTTGTTT  799

seq1  TCTTTGTTAGTTTTTTTAATTTTTTTATTTTTATTTATTTTTTGTTTTTT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTTAGTTTTTTTAATTTTTTTATTTTTATTTATTTTTTGTTTTTT  849

seq1  TTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTG  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTG  899

seq1  TAGACCAGGGTGGCCTTGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAGGGTGGCCTTGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAA  949

seq1  GTGCAGGGAGTAAAGACGTGCGCCACTACTGCCAGGTGTTTTTTGTTTTC  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGGGAGTAAAGACGTGCGCCACTACTGCCAGGTGTTTTTTGTTTTC  999

seq1  TTATGTAGCATCTTTCCAGCAGATCTTGGGAGAGGAATTC  1027
      ||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTAGCATCTTTCCAGCAGATCTTGGGAGAGGAATTC  1039