BAC Information

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BAC

Clone NameB6Ng01-007J08
Chromosome13 (Build37)
Map Location 62,581,318 - 62,726,304
singlet/doubletdoublet
Overlap geneLOC100041455, 6720457D02Rik, EG665503
Upstream geneEG624056, LOC665717, Ctsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik
Downstream geneLOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik, Fancc, Ptch1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007J08.bB6Ng01-007J08.g
ACCDH844107DH844108
length1,113943
definitionDH844107|Mus musculus domesticus DNA, BAC clone: B6Ng01-007J08, 5' end.DH844108|Mus musculus domesticus DNA, BAC clone: B6Ng01-007J08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,581,318 - 62,582,432)(62,725,361 - 62,726,304)
sequence
gaattctccttcgcctcggacgtgtcactccttgattggctgcagcccat
cggccgagttgacgtcacggggaaggcagagcacaagtagtcataagata
cccttggcacatgcgcagattatttgtttaccacttagaacacagctgtc
agcgccatcttgtaacggcgaatgtgggcgcggctcccaacaggttggat
ttttcctggtctttcagtttcaggggaaataaatcaactacaaaaaaaaa
aaaaaaaaaaaaaaacccacaacgttttaactgattttgagttatgtgtc
aaaattcttaacctacagcaatcagaatttattctacgtactaactcaca
attccctcccagggtcagatgtacagttcaattctgaaccatgttttatt
ttcactccttttgttttctcaattacttaggggggtacttagtgggagag
ttttcctctgcccaggtcaccacatgtatgaccagaacgataatctagct
cacaatccatcccagtccagcagatcagattgtgataggtcagtcaacct
gctcttcctagtcatggaatttactgtcctgaacagtggctgccacactc
agtacagtattccttgttgtctacctcacagctcactagtgctacatcaa
tagagaatcctagaaggatcccacaaggtacctcctactgttactacaga
ttgttagctctgcccagagtccatcactatctagggtcaccaggctgggt
ctcaggacaatagcagcacagctactggatgatgatagatgaaaggattc
agacagcacaggtccattgagctcttgcatagcccacaatagtggtagac
atggactgagttgggaaactttgtagttatgaagaaattcttgcagtctc
cccagagcatggtctcccccttcatcaaggaacatcatgtgttacatcct
attccaccacctatattcctcttcagtcatcaatttggctcctatgttgg
gaagtcctgcagaatcctatggaccattccacagtaactattgtccagga
aaaaatagccctccatgaaacccataattgtctatgagatcagaccagaa
gagatatggggaa
gaattctgttacgtgctgaacaccagctgagacatacaggaactactgtt
ttcttcaactcttcattggtacagtcattgatttactagtggggccacat
tctgtgagccattcttatctatccaatttctgcatactttgagagatcca
tgctccgagttttgttcatctggaaaacctttactaatacagatatgttt
tttcaccttcccacgtaggaaaccgtgctggctaacaacagtgctccata
gtgattggcatccatcccctgcttttcccccagggttgtctggagtctca
tatgtagcaattgcatattagctgcggttttcctgatgtcagtgtaaaat
gagaggagcaaacatcatattttatgtcctaaaaatctctctttaattgt
aattatccttgcaacctatagtttattcggctccaagttgaatactgtac
tatgcaaggtgtggcttttgattccttggtggaggatgggacagagtgag
gaggaggaaaaccggcggcggccttggaggagcaggaagaagaaattcct
gctgagttctggatgacagaaagatagactattggaggacgggactgaaa
gaaagtcttgcagatctgaaaagggtcagcttctggataagaaacccgag
ctgggaagccctatgctgtgtgccttcagcgcactctaaccgtaagggag
gtgctcatgtcaatcaagactcacgaaccaatcagggcctccgaataggc
ccgccaataggagtagaggcgtgttctttagtgtgccttgttcccctact
ctgcattctttccgttgcgagcagctgaaagattgatctgttgtgttttg
gtgtctgctgacaagggccttagggaattgtcagcgatttcaacgtggcg
acatggtgagcgtgtgaccactggcctttaaccggatggagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_62581318_62582432
seq2: B6Ng01-007J08.b_45_1157

seq1  GAATTCTCCTTCGCCTCGGACGTGTCACTCCTTGATTGGCTGCAGCCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTCGCCTCGGACGTGTCACTCCTTGATTGGCTGCAGCCCAT  50

seq1  CGGCCGAGTTGACGTCACGGGGAAGGCAGAGCACAAGTAGTCATAAGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCGAGTTGACGTCACGGGGAAGGCAGAGCACAAGTAGTCATAAGATA  100

seq1  CCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGCTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGCTGTC  150

seq1  AGCGCCATCTTGTAACGGCGAATGTGGGCGCGGCTCCCAACAGGTTGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCCATCTTGTAACGGCGAATGTGGGCGCGGCTCCCAACAGGTTGGAT  200

seq1  TTTTCCTGGTCTTTCAGTTTCAGGGGAAATAAATCAACTAC--AAAAAAA  248
      |||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  TTTTCCTGGTCTTTCAGTTTCAGGGGAAATAAATCAACTACAAAAAAAAA  250

seq1  AAAAAAAAAAAAAAACCCACAACGTTTTAACTGATTTTGAGTTATGTGTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAACCCACAACGTTTTAACTGATTTTGAGTTATGTGTC  300

seq1  AAAATTCTTAACCTACAGCAATCAGAATTTATTCTACGTACTAACTCACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCTTAACCTACAGCAATCAGAATTTATTCTACGTACTAACTCACA  350

seq1  ATTCCCTCCCAGGGTCAGATGTACAGTTCAATTCTGAACCATGTTTTATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTCCCAGGGTCAGATGTACAGTTCAATTCTGAACCATGTTTTATT  400

seq1  TTCACTCCTTTTGTTTTCTCAATTACTTAGGGGGGTACTTAGTGGGAGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTCCTTTTGTTTTCTCAATTACTTAGGGGGGTACTTAGTGGGAGAG  450

seq1  TTTTCCTCTGCCCAGGTCACCACATGTATGACCAGAACGATAATCTAGCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCTGCCCAGGTCACCACATGTATGACCAGAACGATAATCTAGCT  500

seq1  CACAATCCATCCCAGTCCAGCAGATCAGATTGTGATAGGTCAGTCAACCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATCCATCCCAGTCCAGCAGATCAGATTGTGATAGGTCAGTCAACCT  550

seq1  GCTCTTCCTAGTCATGGAATTTACTGTCCTGAACAGTGGCTGCCACACTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCCTAGTCATGGAATTTACTGTCCTGAACAGTGGCTGCCACACTC  600

seq1  AGTACAGTATTCCTTGTTGTCTACCTCACAGCTCACTAGTGCTACATCAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGTATTCCTTGTTGTCTACCTCACAGCTCACTAGTGCTACATCAA  650

seq1  TAGAGAATCCTAGAAGGATCCCACAAGGTACCTCCTACTGTTACTACAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAATCCTAGAAGGATCCCACAAGGTACCTCCTACTGTTACTACAGA  700

seq1  TTGTTAGCTCTGCCCAGAGTCCATCACTATCTAGGGTCACCAGGCTGGGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGCTCTGCCCAGAGTCCATCACTATCTAGGGTCACCAGGCTGGGT  750

seq1  CTCAGGACAATAGCAGCACAGCTACTGGATGATGATAGATGAAAGGATTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGACAATAGCAGCACAGCTACTGGATGATGATAGATGAAAGGATTC  800

seq1  AGACAGCACAGGTCCATTGAGCTC-TGCATAG-CCACAATAGTGGTAGAC  846
      |||||||||||||||||||||||| ||||||| |||||||||||||||||
seq2  AGACAGCACAGGTCCATTGAGCTCTTGCATAGCCCACAATAGTGGTAGAC  850

seq1  ATGGACTGAGTTTGGAAACTTTGTAGTTATGAAGAAATTCTTGCAGTCT-  895
      |||||||||||| |||||||||||||||||||||||||||||||||||| 
seq2  ATGGACTGAGTTGGGAAACTTTGTAGTTATGAAGAAATTCTTGCAGTCTC  900

seq1  CCCAGAGCAT-GTCTCCCTCTTCAATCAAGGAACATCATGTG-TACATTC  943
      |||||||||| ||||||| |||| |||||||||||||||||| ||||| |
seq2  CCCAGAGCATGGTCTCCCCCTTC-ATCAAGGAACATCATGTGTTACATCC  949

seq1  TATTCCA-CACCTATATTCCTCTTCAGTCATCAATTTGCTTCATA-GTTG  991
      ||||||| ||||||||||||||||||||||||||||||  || || ||||
seq2  TATTCCACCACCTATATTCCTCTTCAGTCATCAATTTGGCTCCTATGTTG  999

seq1  GGAAGTCCTGCAGGAAATCATATGACACATTCAAACAGTAACTATTGTTC  1041
      |||||||||||||  |||| ||||   |||||  |||||||||||||| |
seq2  GGAAGTCCTGCAG--AATCCTATGGACCATTC-CACAGTAACTATTGTCC  1046

seq1  AAGGAGAAATAGCCCT-CATGAAAAACAATAAATTGTCTATGAAGGAATT  1090
      | | | |||||||||| |||||||  ||   ||||||||||||  ||  |
seq2  AGGAAAAAATAGCCCTCCATGAAACCCA--TAATTGTCTATGA--GA--T  1090

seq1  TAGAGACAGAAGAGAGATGGTGGAA  1115
       |||  ||||||||| |||| ||||
seq2  CAGA-CCAGAAGAGATATGG-GGAA  1113

seq1: chr13_62725361_62726304
seq2: B6Ng01-007J08.g_66_1008 (reverse)

seq1  TGCTCCTTCCGGTT-AAGGGCAGTGGTCACACGCTCACCATGTCGCCACG  49
      |||||| ||||||| |||| ||||||||||||||||||||||||||||||
seq2  TGCTCCATCCGGTTAAAGGCCAGTGGTCACACGCTCACCATGTCGCCACG  50

seq1  TTGTAGATCGCTGGCAATTCCCTAAGGCCCCTGTCAGCAGACATCAAAAC  99
      ||| | ||||||| |||||||||||||||| |||||||||||| ||||||
seq2  TTG-AAATCGCTGACAATTCCCTAAGGCCCTTGTCAGCAGACACCAAAAC  99

seq1  ACAACAGATCAATCTTTCAGCCTGCTCGCAACGGAGAGAATGCAGAGTAG  149
      |||||||||||||||||||| |||||||||||||| ||||||||||||||
seq2  ACAACAGATCAATCTTTCAG-CTGCTCGCAACGGAAAGAATGCAGAGTAG  148

seq1  GGGAACAAGGCACACTAAAGAACACGCCTCTACTCCTATTGGCGGGCCTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACAAGGCACACTAAAGAACACGCCTCTACTCCTATTGGCGGGCCTA  198

seq1  TTCGGAGGCCCTGATTGGTTCGTGAGTCTTGATTGACATGAGCACCTCCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGAGGCCCTGATTGGTTCGTGAGTCTTGATTGACATGAGCACCTCCC  248

seq1  TTACGGTTAGAGTGCGCTGAAGGCACACAGCATAGGGCTTCCCAGCTCGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGGTTAGAGTGCGCTGAAGGCACACAGCATAGGGCTTCCCAGCTCGG  298

seq1  GTTTCTTATCCAGGAGCTGACCCTTTTCAGATCTGCAAGACTTTCTTTCA  349
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTATCCAGAAGCTGACCCTTTTCAGATCTGCAAGACTTTCTTTCA  348

seq1  GTCCCGTCCTCCAATAGTCTATCTTTCTGTCATCCAGAACTCAGCAGGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCGTCCTCCAATAGTCTATCTTTCTGTCATCCAGAACTCAGCAGGAA  398

seq1  TTTCTTCTTCCTGCTCCTCCAAGGCCGCCGCCGGTTTTCCTCCTCCTCAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTTCCTGCTCCTCCAAGGCCGCCGCCGGTTTTCCTCCTCCTCAC  448

seq1  TCTGTCCCATCCTCCACCAAGGAATCAAAAGCCACACCTTGCATAGTACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCCATCCTCCACCAAGGAATCAAAAGCCACACCTTGCATAGTACA  498

seq1  GTATTCAACTTGGAGCCGAATAAACTATAGGTTGCAAGGATAATTACAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCAACTTGGAGCCGAATAAACTATAGGTTGCAAGGATAATTACAAT  548

seq1  TAAAGAGAGATTTTTAGGACATAAAATATGATGTTTGCTCCTCTCATTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGAGATTTTTAGGACATAAAATATGATGTTTGCTCCTCTCATTTT  598

seq1  ACACTGACATCAGGAAAACCGCAGCTAATATGCAATTGCTACATATGAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGACATCAGGAAAACCGCAGCTAATATGCAATTGCTACATATGAGA  648

seq1  CTCCAGACAACCCTGGGGGAAAAGCAGGGGATGGATGCCAATCACTATGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGACAACCCTGGGGGAAAAGCAGGGGATGGATGCCAATCACTATGG  698

seq1  AGCACTGTTGTTAGCCAGCACGGTTTCCTACGTGGGAAGGTGAAAAAACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGTTGTTAGCCAGCACGGTTTCCTACGTGGGAAGGTGAAAAAACA  748

seq1  TATCTGTATTAGTAAAGGTTTTCCAGATGAACAAAACTCGGAGCATGGAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTATTAGTAAAGGTTTTCCAGATGAACAAAACTCGGAGCATGGAT  798

seq1  CTCTCAAAGTATGCAGAAATTGGATAGATAAGAATGGCTCACAGAATGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAAAGTATGCAGAAATTGGATAGATAAGAATGGCTCACAGAATGTG  848

seq1  GCCCCACTAGTAAATCAATGACTGTACCAATGAAGAGTTGAAGAAAACAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCACTAGTAAATCAATGACTGTACCAATGAAGAGTTGAAGAAAACAG  898

seq1  TAGTTCCTGTATGTCTCAGCTGGTGTTCAGCACGTAACAGAATTC  944
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCCTGTATGTCTCAGCTGGTGTTCAGCACGTAACAGAATTC  943