BAC Information

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BAC

Clone NameB6Ng01-008D16
Chromosome13 (Build37)
Map Location 23,219,021 - 23,327,017
singlet/doubletdoublet
Overlap geneV1ri5, V1rh13, V1rh12, V1rh16
Upstream geneV1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639
Downstream geneOTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008D16.bB6Ng01-008D16.g
ACCDH844558DH844559
length1,1031,099
definitionDH844558|Mus musculus domesticus DNA, BAC clone: B6Ng01-008D16, 5' end.DH844559|Mus musculus domesticus DNA, BAC clone: B6Ng01-008D16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,325,892 - 23,327,017)(23,219,021 - 23,220,151)
sequence
gaattcttgctataaaggattcaggctgtgagtcagtccatcctgaaaca
gctcatgttaactttatcccagtgcaaaatagcaacaagcaaaaatctgt
tttgttcttgttcttttttattttattttattgttatacagtttgaagtg
tcaaaacagaaattgaggactagaaaagtagggatccccaggaaagcaag
cattgaacaaacagaaaatgttaatagtttctatcaggatttggggtgaa
ttgacatcagggattgtgacagattctaacctttgactgaacagttaaca
cctattataaatatgttaatgaaggttgatgagcttgcttttaatatctg
aaacatttcattatgtgcagatatgtaggatggtactgtgatttctagga
tacactgatacttgtgatagttatctctttgttaaaggagcagttgaaag
gcagcaattgacatttctaaagtcaggaggccacctggacccaaaccttg
gcacaaagctaagttcaagttcatgaaggtcatgtgtgagatcaccagga
catagacatttaaaacaaccatgtgaacttagcaggaaggagaacaggga
acagaggcactccatgtactcagaacacacaaaaccatggagacactgac
acatccagattcctcctcttctagcaaagatacccaaagcttgccataaa
ttcctaagtaatgagaatggagctcctgagcatgaataataacatccagc
tgaggtctaagtcctggaatcagcttgggctggtgcagaacaaagcagcc
tgcctgacaaacaggttggaaaagaaacaggaggagaagcaggctgtaaa
gcaaactgacataaacgctgctcacaaggcccacagaggcaaatgccacc
atgacctcttagatggaggagtccctgctcacactggatacctcaacaaa
ctgtgctgcatgcagcatattgagatctcatactacaaactgcactcatc
ccatggcagcactaacactcatatgtgtcttccattactaatctcatcct
agtcagacgttctttgctccttgatgcctgatcactatgggggcacagat
tcc
gaattctccagacttcatctactagataacttaactttgtttcaacaaaa
gactgtttttagaaacctttgggacagtcagctttaattattggagtgta
attggaaaaatgtgttgtttaatgtaatattgaaaccctaaaattgcatt
taattctaacgcacaaaatcagtttggggttcaaatataacccaggaaat
attaaggtggaggaacaaagacacacaaattggaaaagaaaaggcaatcc
taggagttattttgtttatcaaagggaaaactgaatcaatgtagtggtcc
agtgagatgggtcacaaggaaagctgcctagcctggcaacctgatttcca
tccggaaaccatatggtagaaagtcagaaccaattcctaggaatagtcct
ccagcttacacatgcacgccatggcaaatgtgtatgcccagacatataca
catacacgcatataaaatgagtgaaattttaaagatctatcagagacata
ataaaagttgaagcaccactaatgtttgatatactaaacacttgaagcaa
caggttccttgagtgttagtgtatgtggcatgggtaatacacacacatat
tttcaagtgtctgtgcataggatgtgcgtaaggagcattgatttaacccc
ttttaatttggaattacaagatggaaatatgacagaataaaataagaaag
gacagaatgaattagaaaataattagattctatccagcaatgttgcgaat
ttgtatgattaaacaaggattcaagtgatatgattttccaaattcagagt
tcaaaatatgtggttataggatttagatatttgttctatattattaatgt
ggtgatttgaatgagatggtccacatacgcttacatttaaatggttagtc
atcaaggaggaaccagaggaagcagtattagtagctatgtcttgttgaga
gtatgcacctggggtagtctaagggttttcaaaactacgctggcaagtct
ctctctctcctctcagtctcctcctctcatatctcctctcctcagatctc
tccttctcttcagatcattaatattatttatgaactgctatagtcctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_23325892_23327017
seq2: B6Ng01-008D16.b_45_1147 (reverse)

seq1  GGAATCTGTGGCCCCCAATAAGTGATCAGGGCATCAAAGGGAGCAAAGAA  50
      ||||||||| |||||||   |||||||| ||||||||  ||||||||| |
seq2  GGAATCTGT-GCCCCCA--TAGTGATCA-GGCATCAA--GGAGCAAAG-A  43

seq1  ACGTTCTGGACTAGGGGATGAAGATTAAGTAAATGGGAGACACAATTAAT  100
      ||| ||| |||||  ||||| ||||| ||| ||||| |||||||    ||
seq2  ACG-TCT-GACTA--GGATG-AGATT-AGT-AATGGAAGACACA---TAT  83

seq1  GAGGTGTTAGGTGCTGCCATGGGATGAGTGCAGTTTTGTAGTTATGAGTT  150
      || |||||| ||||||||||||||||||||||| ||||||| |||||| |
seq2  GA-GTGTTA-GTGCTGCCATGGGATGAGTGCAG-TTTGTAG-TATGAGAT  129

seq1  CTCAATATGGCTGCATGCAGCACAGTTTGTTGAGGTATCCAGTTGTGAGC  200
      |||||||| ||||||||||||||||||||||||||||||||| |||||||
seq2  CTCAATAT-GCTGCATGCAGCACAGTTTGTTGAGGTATCCAG-TGTGAGC  177

seq1  AGGGACTCCTCCATCTAAGAGGTCATGGTGGCATTTGCCTCTGTGGGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTCCTCCATCTAAGAGGTCATGGTGGCATTTGCCTCTGTGGGCCT  227

seq1  TGTGAGCAGCGTTTATGTCAGTTTGCTTTACAGCCTGCTTCTCCTCCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCAGCGTTTATGTCAGTTTGCTTTACAGCCTGCTTCTCCTCCTGT  277

seq1  TTCTTTTCCAACCTGTTTGTCAGGCAGGCTGCTTTGTTCTGCACCAGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCCAACCTGTTTGTCAGGCAGGCTGCTTTGTTCTGCACCAGCCC  327

seq1  AAGCTGATTCCAGGACTTAGACCTCAGCTGGATGTTATTATTCATGCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGATTCCAGGACTTAGACCTCAGCTGGATGTTATTATTCATGCTCA  377

seq1  GGAGCTCCATTCTCATTACTTAGGAATTTATGGCAAGCTTTGGGTATCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCCATTCTCATTACTTAGGAATTTATGGCAAGCTTTGGGTATCTT  427

seq1  TGCTAGAAGAGGAGGAATCTGGATGTGTCAGTGTCTCCATGGTTTTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGAAGAGGAGGAATCTGGATGTGTCAGTGTCTCCATGGTTTTGTGT  477

seq1  GTTCTGAGTACATGGAGTGCCTCTGTTCCCTGTTCTCCTTCCTGCTAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGAGTACATGGAGTGCCTCTGTTCCCTGTTCTCCTTCCTGCTAAGT  527

seq1  TCACATGGTTGTTTTAAATGTCTATGTCCTGGTGATCTCACACATGACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGGTTGTTTTAAATGTCTATGTCCTGGTGATCTCACACATGACCT  577

seq1  TCATGAACTTGAACTTAGCTTTGTGCCAAGGTTTGGGTCCAGGTGGCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAACTTGAACTTAGCTTTGTGCCAAGGTTTGGGTCCAGGTGGCCTC  627

seq1  CTGACTTTAGAAATGTCAATTGCTGCCTTTCAACTGCTCCTTTAACAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTTAGAAATGTCAATTGCTGCCTTTCAACTGCTCCTTTAACAAAG  677

seq1  AGATAACTATCACAAGTATCAGTGTATCCTAGAAATCACAGTACCATCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAACTATCACAAGTATCAGTGTATCCTAGAAATCACAGTACCATCCT  727

seq1  ACATATCTGCACATAATGAAATGTTTCAGATATTAAAAGCAAGCTCATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCTGCACATAATGAAATGTTTCAGATATTAAAAGCAAGCTCATCA  777

seq1  ACCTTCATTAACATATTTATAATAGGTGTTAACTGTTCAGTCAAAGGTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCATTAACATATTTATAATAGGTGTTAACTGTTCAGTCAAAGGTTA  827

seq1  GAATCTGTCACAATCCCTGATGTCAATTCACCCCAAATCCTGATAGAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGTCACAATCCCTGATGTCAATTCACCCCAAATCCTGATAGAAAC  877

seq1  TATTAACATTTTCTGTTTGTTCAATGCTTGCTTTCCTGGGGATCCCTACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAACATTTTCTGTTTGTTCAATGCTTGCTTTCCTGGGGATCCCTACT  927

seq1  TTTCTAGTCCTCAATTTCTGTTTTGACACTTCAAACTGTATAACAATAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGTCCTCAATTTCTGTTTTGACACTTCAAACTGTATAACAATAAA  977

seq1  ATAAAATAAAAAAGAACAAGAACAAAACAGATTTTTGCTTGTTGCTATTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAAAAAAGAACAAGAACAAAACAGATTTTTGCTTGTTGCTATTT  1027

seq1  TGCACTGGGATAAAGTTAACATGAGCTGTTTCAGGATGGACTGACTCACA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGGGATAAAGTTAACATGAGCTGTTTCAGGATGGACTGACTCACA  1077

seq1  GCCTGAATCCTTTATAGCAAGAATTC  1126
      ||||||||||||||||||||||||||
seq2  GCCTGAATCCTTTATAGCAAGAATTC  1103

seq1: chr13_23219021_23220151
seq2: B6Ng01-008D16.g_68_1166

seq1  GAATTCTCCAGACTTCATCTACTAGATAACTTAACTTTGTTTCAACAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAGACTTCATCTACTAGATAACTTAACTTTGTTTCAACAAAA  50

seq1  GACTGTTTTTAGAAACCTTTGGGACAGTCAGCTTTAATTATTGGAGTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTTTTAGAAACCTTTGGGACAGTCAGCTTTAATTATTGGAGTGTA  100

seq1  ATTGGAAAAATGTGTTGTTTAATGTAATATTGAAACCCTAAAATTGCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAAAAATGTGTTGTTTAATGTAATATTGAAACCCTAAAATTGCATT  150

seq1  TAATTCTAACGCACAAAATCAGTTTGGGGTTCAAATATAACCCAGGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTAACGCACAAAATCAGTTTGGGGTTCAAATATAACCCAGGAAAT  200

seq1  ATTAAGGTGGAGGAACAAAGACACACAAATTGGAAAAGAAAAGGCAATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGTGGAGGAACAAAGACACACAAATTGGAAAAGAAAAGGCAATCC  250

seq1  TAGGAGTTATTTTGTTTATCAAAGGGAAAACTGAATCAATGTAGTGGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGTTATTTTGTTTATCAAAGGGAAAACTGAATCAATGTAGTGGTCC  300

seq1  AGTGAGATGGGTCACAAGGAAAGCTGCCTAGCCTGGCAACCTGATTTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGATGGGTCACAAGGAAAGCTGCCTAGCCTGGCAACCTGATTTCCA  350

seq1  TCCGGAAACCATATGGTAGAAAGTCAGAACCAATTCCTAGGAATAGTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGAAACCATATGGTAGAAAGTCAGAACCAATTCCTAGGAATAGTCCT  400

seq1  CCAGCTTACACATGCACGCCATGGCAAATGTGTATGCCCAGACATATACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTACACATGCACGCCATGGCAAATGTGTATGCCCAGACATATACA  450

seq1  CATACACGCATATAAAATGAGTGAAATTTTAAAGATCTATCAGAGACATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACGCATATAAAATGAGTGAAATTTTAAAGATCTATCAGAGACATA  500

seq1  ATAAAAGTTGAAGCACCACTAATGTTTGATATACTAAACACTTGAAGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGTTGAAGCACCACTAATGTTTGATATACTAAACACTTGAAGCAA  550

seq1  CAGGTTCCTTGAGTGTTAGTGTATGTGGCATGGGTAATACACACACATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTCCTTGAGTGTTAGTGTATGTGGCATGGGTAATACACACACATAT  600

seq1  TTTCAAGTGTCTGTGCATAGGATGTGCGTAAGGAGCATTGATTTAACCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGTGTCTGTGCATAGGATGTGCGTAAGGAGCATTGATTTAACCCC  650

seq1  TTTTAATTTGGAATTACAAGATGGAAATATGACAGAATAAAATAAGAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTTGGAATTACAAGATGGAAATATGACAGAATAAAATAAGAAAG  700

seq1  GACAGAATGAATTAGAAAATAATTAGATTCTATCCAGCAATGTTGCGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAATGAATTAGAAAATAATTAGATTCTATCCAGCAATGTTGCGAAT  750

seq1  TTGTATGATTAAACAAGGATTCAAGTGATATGATTTTCCAAATTCAGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGATTAAACAAGGATTCAAGTGATATGATTTTCCAAATTCAGAGT  800

seq1  TCAAAATATGTGGTTATAGGATTTAGATATTTGTTCTATATTATTAATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATATGTGGTTATAGGATTTAGATATTTGTTCTATATTATTAATGT  850

seq1  GGTGATTTGAATGAGAATGGTCCACATACGCTTACATTTAAATGGTTAGT  900
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGTGATTTGAATGAG-ATGGTCCACATACGCTTACATTTAAATGGTTAGT  899

seq1  CATCAAGGAGGAACCAGAGGAAAGCAGTATTAGTAGCTATGGCCTTGTTG  950
      |||||||||||||||||||| ||||||||||||||||||| | |||||| 
seq2  CATCAAGGAGGAACCAGAGG-AAGCAGTATTAGTAGCTAT-GTCTTGTT-  946

seq1  GAGGAAGTATGTCACCTGGGGTAGTCTTAGGGGTTTTCAAAAACCTACGC  1000
      |||  |||||| |||||||||||||| || ||||||||||||  ||||| 
seq2  GAG--AGTATG-CACCTGGGGTAGTC-TAAGGGTTTTCAAAA--CTACG-  989

seq1  CTGGCCAAGTCTCTCTCTCTCTCTCTTCATGTTCTCTCTCTCTTCATATT  1050
      |||| |||||||||||||||| ||||   | | |||   ||| |||||  
seq2  CTGG-CAAGTCTCTCTCTCTC-CTCTCAGTCTCCTC---CTC-TCATA--  1031

seq1  CTCTCTCTCTCTTCATATTCTCTCTCTTCTCTCTTTCCAGATCATTTATT  1100
       |||| ||||| ||| | |||||| ||||||    | ||||||||| || 
seq2  -TCTC-CTCTCCTCAGA-TCTCTC-CTTCTC----TTCAGATCATTAAT-  1072

seq1  AATTATTTTTATGAAACTGCTATAGTCCTGT  1131
       ||||  |||||| |||||||||||||||||
seq2  -ATTA--TTTATG-AACTGCTATAGTCCTGT  1099