BAC Information

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BAC

Clone NameB6Ng01-008G14
Chromosome13 (Build37)
Map Location 42,108,599 - 42,264,377
singlet/doubletdoublet
Overlap geneLOC100039272, Hivep1
Upstream geneTmem14c, Mak, EG621771, Gcm2, LOC637277, Elovl2, LOC268650, BC024659, Nedd9, EG621976, EG328231, 9530008L14Rik
Downstream geneEdn1, Hn1-ps4, Phactr1, Tbc1d7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008G14.bB6Ng01-008G14.g
ACCDH844676DH844677
length806659
definitionDH844676|Mus musculus domesticus DNA, BAC clone: B6Ng01-008G14, 5' end.DH844677|Mus musculus domesticus DNA, BAC clone: B6Ng01-008G14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,263,572 - 42,264,377)(42,108,599 - 42,109,256)
sequence
gaattccctgtaatctgaacatgtagcccactctcccaaggctctcctcc
aagtgcacatggctgtgtgcacagtggcagcatggcttgttcagccttta
cttggcactagccagtcaatggtactacataccatctccaatccgtacac
atttgtcctagctctttacaatggagtagctcttactacctgagactagg
tcactgttcatacacatttagaaattaattcaggatgattcattgagtgg
attactggttgaaaagttggataaaatgagttataaattcttgagtttaa
aaacagaaaatctacaaaaatatacgtctacactctgattggtcataata
cagtaaaagactgtcttttcctttaaactggttgtaaataattatctaca
tttgttaatagtattaagggaaaaaagaaaacaaatgtttttcaacacaa
taagtgtttttaacaagtaaaatattttatctgcaaatgctcatggcacc
cctttcttgttctcttcattagggaggcgttgggcttagcgactgaaccc
agccccacagcataccaggcaggcactccaccaccgagccacagtcctag
cccgtgccaacaccaggagtgctgcactaagtgtctcagagaaggtgaca
gctaggcagtgggctctgctcatgcagcagctcggcagggtgagaaacat
ggaccaatcacacaccaaggaagacaggtcaaggacttcctgagagaaag
aacccttaagatctgggaggttagagaagaaaatgcttctgggcgagagc
cttgca
gaattcaccttttagtagatacccatgaatctaatatataaacgatggcc
agtggaacttggaaaacaactcagttttcaagaaaaataggattttatta
gttacttagctttaatttcgaaagtctctatagccagacgactttcaaat
ttacaatcttcccatctttatctcctgataagcaagctggggttacatct
atgtgctaccatgttcccattttgctgtgtgctttttaccacaattagaa
acaaagtgttttagactagtgtggtgacacctttaatgtaatccaagaat
ttgggaggcagaggcaagaggatggtaagtttgaggccagcctgggctac
atcaggagtttatctcaaaatgaaaacaaaattgttttcacgggctggag
aggtggctcagtagttaagagcactgtctgctcttccagaggtcctgagt
tcaattcccagcaaccacatggtgactcacaaccatctgtaatgggatct
gatgcactcttctggtgtgtgtatgaagacagctacaatgtagtaatata
aataaaaacaaatcataaaaaaattattttcacacgacataaccttgctc
atttaaaacatagttacttgtgctcaatgtgctcatggtgaaaagtgatt
actaaccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_42263572_42264377
seq2: B6Ng01-008G14.b_36_841 (reverse)

seq1  TGCATGGCTCTCG-CCAGAAGCATTTTCCTTCTCTGACCTCCCAGATCTT  49
      |||| |||||||| ||||||||||||| ||||||| ||||||||||||||
seq2  TGCAAGGCTCTCGCCCAGAAGCATTTT-CTTCTCTAACCTCCCAGATCTT  49

seq1  AAGGGTTCCTTCTCTCAGGAAGTCCTTGACCTGTCTTCCTTGGTGTGTGA  99
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTTCTTTCTCTCAGGAAGTCCTTGACCTGTCTTCCTTGGTGTGTGA  99

seq1  TTGGTCCATGTTTCTCACCCTGCCGAGCTGCTGCATGAGCAGAGCCCACT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCCATGTTTCTCACCCTGCCGAGCTGCTGCATGAGCAGAGCCCACT  149

seq1  GCCTAGCTGTCACCTTCTCTGAGACACTTAGTGCAGCACTCCTGGTGTTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGCTGTCACCTTCTCTGAGACACTTAGTGCAGCACTCCTGGTGTTG  199

seq1  GCACGGGCTAGGACTGTGGCTCGGTGGTGGAGTGCCTGCCTGGTATGCTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGGGCTAGGACTGTGGCTCGGTGGTGGAGTGCCTGCCTGGTATGCTG  249

seq1  TGGGGCTGGGTTCAGTCGCTAAGCCCAACGCCTCCCTAATGAAGAGAACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTGGGTTCAGTCGCTAAGCCCAACGCCTCCCTAATGAAGAGAACA  299

seq1  AGAAAGGGGTGCCATGAGCATTTGCAGATAAAATATTTTACTTGTTAAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGGGTGCCATGAGCATTTGCAGATAAAATATTTTACTTGTTAAAA  349

seq1  ACACTTATTGTGTTGAAAAACATTTGTTTTCTTTTTTCCCTTAATACTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTATTGTGTTGAAAAACATTTGTTTTCTTTTTTCCCTTAATACTAT  399

seq1  TAACAAATGTAGATAATTATTTACAACCAGTTTAAAGGAAAAGACAGTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAATGTAGATAATTATTTACAACCAGTTTAAAGGAAAAGACAGTCT  449

seq1  TTTACTGTATTATGACCAATCAGAGTGTAGACGTATATTTTTGTAGATTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGTATTATGACCAATCAGAGTGTAGACGTATATTTTTGTAGATTT  499

seq1  TCTGTTTTTAAACTCAAGAATTTATAACTCATTTTATCCAACTTTTCAAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTTAAACTCAAGAATTTATAACTCATTTTATCCAACTTTTCAAC  549

seq1  CAGTAATCCACTCAATGAATCATCCTGAATTAATTTCTAAATGTGTATGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATCCACTCAATGAATCATCCTGAATTAATTTCTAAATGTGTATGA  599

seq1  ACAGTGACCTAGTCTCAGGTAGTAAGAGCTACTCCATTGTAAAGAGCTAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGACCTAGTCTCAGGTAGTAAGAGCTACTCCATTGTAAAGAGCTAG  649

seq1  GACAAATGTGTACGGATTGGAGATGGTATGTAGTACCATTGACTGGCTAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATGTGTACGGATTGGAGATGGTATGTAGTACCATTGACTGGCTAG  699

seq1  TGCCAAGTAAAGGCTGAACAAGCCATGCTGCCACTGTGCACACAGCCATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGTAAAGGCTGAACAAGCCATGCTGCCACTGTGCACACAGCCATG  749

seq1  TGCACTTGGAGGAGAGCCTTGGGAGAGTGGGCTACATGTTCAGATTACAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTTGGAGGAGAGCCTTGGGAGAGTGGGCTACATGTTCAGATTACAG  799

seq1  GGAATTC  806
      |||||||
seq2  GGAATTC  806

seq1: chr13_42108599_42109256
seq2: B6Ng01-008G14.g_70_728

seq1  GAATTCAGCATTTAGTAGATACCCATGAATCTAATATATAAACGATGGCC  50
      ||||||| | ||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTTTTAGTAGATACCCATGAATCTAATATATAAACGATGGCC  50

seq1  AGTGGAACTTGGAAAACAACTCAGTTTTCAAGAAAAATAGGATTTTATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAACTTGGAAAACAACTCAGTTTTCAAGAAAAATAGGATTTTATTA  100

seq1  GTTACTTAGCTTTAATTTCGAAAGTCTCTATAGCCAGACGACTTTCAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTTAGCTTTAATTTCGAAAGTCTCTATAGCCAGACGACTTTCAAAT  150

seq1  TTACAATCTTCCCATCTTTATCTCCTGATAAGCAAGCTGGGGTTACATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATCTTCCCATCTTTATCTCCTGATAAGCAAGCTGGGGTTACATCT  200

seq1  ATGTGCTACCATGTTCCCATTTTGCTGTGTGCTTTTTACCACAATTAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTACCATGTTCCCATTTTGCTGTGTGCTTTTTACCACAATTAGAA  250

seq1  ACAAAGTGTTTTAGACTAGTGTGGTGACACCTTTAATGTAATCCAAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTGTTTTAGACTAGTGTGGTGACACCTTTAATGTAATCCAAGAAT  300

seq1  TTGGGAGGCAGAGGCAAGAGGATGGTAAGTTTGAGGCCAGCCTGGGCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGGCAGAGGCAAGAGGATGGTAAGTTTGAGGCCAGCCTGGGCTAC  350

seq1  ATCAGGAGTTTATCTCAAAATGAAAACAAAATTGTTTTCACGGGCTGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGAGTTTATCTCAAAATGAAAACAAAATTGTTTTCACGGGCTGGAG  400

seq1  AGGTGGCTCAGTAGTTAAGAGCACTGTCTGCTCTTCCAGAGGTCCTGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCTCAGTAGTTAAGAGCACTGTCTGCTCTTCCAGAGGTCCTGAGT  450

seq1  TCAATTCCCAGCAACCACATGGTGACTCACAACCATCTGTAATGGGATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCCCAGCAACCACATGGTGACTCACAACCATCTGTAATGGGATCT  500

seq1  GATGCACTCTTCTGGTGTGTGTATGAAGACAGCTACAATGTAGTAATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCACTCTTCTGGTGTGTGTATGAAGACAGCTACAATGTAGTAATATA  550

seq1  AATAAAAACAAATCATAAAAAAATTATTTTCACACGACATAACCTTGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAACAAATCATAAAAAAATTATTTTCACACGACATAACCTTGCTC  600

seq1  ATTTAAAACATAGTTACTTGTGCTCAATGTGCTCATGGTG-AAAGTGATT  649
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATTTAAAACATAGTTACTTGTGCTCAATGTGCTCATGGTGAAAAGTGATT  650

seq1  ACTAACCCA  658
      |||||||||
seq2  ACTAACCCA  659