BAC Information

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BAC

Clone NameB6Ng01-008I16
Chromosome13 (Build37)
Map Location 26,517,721 - 26,628,610
singlet/doubletdoublet
Overlap geneLOC100042180
Upstream geneTpi-rs8, LOC214973, LOC666221
Downstream geneLOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008I16.bB6Ng01-008I16.g
ACCDH844763DH844764
length510957
definitionDH844763|Mus musculus domesticus DNA, BAC clone: B6Ng01-008I16, 5' end.DH844764|Mus musculus domesticus DNA, BAC clone: B6Ng01-008I16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,628,097 - 26,628,610)(26,517,721 - 26,518,670)
sequence
acccatctgtgacaaaatctcttccttggggcaaagcagacatgaatttt
aaccacatcatgatggggaaaaaaatcagtttggttgattaatgtgtgaa
gtctggcctgaaagagggtgagtagggaaaattaatgatctttccagggc
tcttaaataattctctaatcctagaaaaacagctgtgtttcctgagactg
gagtactaaaataagggttaaataaaatcataacaatgatgcttattgcg
gtagttaggtttctcgaatggagcataattgacataacatatgtatatat
ttatatatgtgtgtgtgtgtgtgtgtgtgtagatagacgatagatagaat
tatatctacatgaatgataattttatcattatatagttattttattatat
atttatatgtatacatgcacatatacacagtagcttatgcactattgttt
caggtagttcaataatggctatcttctgatagaaaagccaaggatccctg
tggatgtcca
gaattcaaaattacaaatatgactacaaacatctattaaacaaaatgcac
aacactgagataagttgacatgtcatcatacttttgttctatcagtttca
ggtcatctgaggatagttgtgtttatccaaatgctttttagcagatatgt
tgaaaggttttgaaaatttgctaatctcactcaagttataagggatgcaa
aagggatggtagcctatgtttatgtgctagtatgatggtgactttttcgt
tatcactgtgaatatactataaggcatattattaatatgaggatttccat
atttctagttgaaaatatgtatcaaacaaaagtcccatatagctaattga
tatgaataaaaatactcctggagtataggattttggaattaaaaaccaat
cgggttttccagtgcaacagaaaacacatttcatttaagctaatgtccta
tctgttgtagaaggacctggtgctgtttgtatgttgatgctaattctgct
ttcctgggaggggctgcggacaagttctgagtcatactcaggtggcttca
tgtgaaccaatcctctagtgaatgaactagtcaatcattgagtgaataga
taggacttcagggttgaacagaggaaaagaaggaggagagagttagatct
ttttggacaggaatattgggaggacaagtctcccggtttcaatggtggtt
ctgtcaggattcaccacagaaggatttagatttaataaggtttacaagtt
aggactttagttgttgctctcagcaattgagttgccattatttttgaact
aagtttgtgttgcaatttctttacccttgtggttcgtttggggttcaaga
gggaaaggtactgggcagcaaagcatgggttgccagatgtgtactacaaa
acccgttgggatctgaagcatggggctggtgtggtagcaactcatcagta
cgaactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_26628097_26628610
seq2: B6Ng01-008I16.b_46_561 (reverse)

seq1  TGGACATCCACA-GGATCCTTGGCTTTTCTATCAGAAGATAGCCATTATT  49
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGGACATCCACAGGGATCCTTGGCTTTTCTATCAGAAGATAGCCATTATT  50

seq1  GAACTACCTG-AACAATAGTGCATAAGCTACTGTGTATATGTGCATGTAT  98
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAACTACCTGAAACAATAGTGCATAAGCTACTGTGTATATGTGCATGTAT  100

seq1  ACATATAAATATATAATAAAATAACTATATAATGATAAAATTATCATTCA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATAAATATATAATAAAATAACTATATAATGATAAAATTATCATTCA  150

seq1  TGTAGATATAATTCTATCTATCGTCTATCTACACACACACACACACACAC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATATAATTCTATCTATCGTCTATCTACACACACACACACACACAC  200

seq1  ACATATATAAATATATACATATGTTATGTCAATTATGCTCCATTCGAGAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATAAATATATACATATGTTATGTCAATTATGCTCCATTCGAGAA  250

seq1  ACCTAACTACCGCAATAAGCATCATTGTTATGATTTTATTTAACCCTTAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAACTACCGCAATAAGCATCATTGTTATGATTTTATTTAACCCTTAT  300

seq1  TTTAGTACTCCAGTCTCAGGAAACACAGCTGTTTTTCTAGGATTAGAGAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTACTCCAGTCTCAGGAAACACAGCTGTTTTTCTAGGATTAGAGAA  350

seq1  TTATTTAAGAGCCCTGGAAAGATCATTAATTTTCCCTACTCACCCTCTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAAGAGCCCTGGAAAGATCATTAATTTTCCCTACTCACCCTCTTT  400

seq1  CAGGCCAGACTTCACACATTAATCAACCAAACTGATTTTTTTCCCCATCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCAGACTTCACACATTAATCAACCAAACTGATTTTTTTCCCCATCA  450

seq1  TGATGTGGTTAAAATTCATGTCTGCTTTGCCCCAAGGAAGAGATTTTGTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTGGTTAAAATTCATGTCTGCTTTGCCCCAAGGAAGAGATTTTGTC  500

seq1  ACAGATGGGTGAATTC  514
      ||||||||||||||||
seq2  ACAGATGGGTGAATTC  516

seq1: chr13_26517721_26518670
seq2: B6Ng01-008I16.g_70_1019

seq1  GAATTCAAAATTACAAATATGACTACAAACATCTATTAAACAAAATGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATTACAAATATGACTACAAACATCTATTAAACAAAATGCAC  50

seq1  AACACTGAGATAAGTTGACATGTCATCATACTTTTGTTCTATCAGTTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGAGATAAGTTGACATGTCATCATACTTTTGTTCTATCAGTTTCA  100

seq1  GGTCATCTGAGGATAGTTGTGTTTATCCAAATGCTTTTTAGCAGATATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATCTGAGGATAGTTGTGTTTATCCAAATGCTTTTTAGCAGATATGT  150

seq1  TGAAAGGTTTTGAAAATTTGCTAATCTCACTCAAGTTATAAGGGATGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGTTTTGAAAATTTGCTAATCTCACTCAAGTTATAAGGGATGCAA  200

seq1  AAGGGATGGTAGCCTATGTTTATGTGCTAGTATGATGGTGACTTTTTCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATGGTAGCCTATGTTTATGTGCTAGTATGATGGTGACTTTTTCGT  250

seq1  TATCACTGTGAATATACTATAAGGCATATTATTAATATGAGGATTTCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTGTGAATATACTATAAGGCATATTATTAATATGAGGATTTCCAT  300

seq1  ATTTCTAGTTGAAAATATGTATCAAACAAAAGTCCCATATAGCTAATTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTAGTTGAAAATATGTATCAAACAAAAGTCCCATATAGCTAATTGA  350

seq1  TATGAATAAAAATACTCCTGGAGTATAGGATTTTGGAATTAAAAACCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATAAAAATACTCCTGGAGTATAGGATTTTGGAATTAAAAACCAAT  400

seq1  CGGGTTTTCCAGTGCAACAGAAAACACATTTCATTTAAGCTAATGTCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTTTTCCAGTGCAACAGAAAACACATTTCATTTAAGCTAATGTCCTA  450

seq1  TCTGTTGTAGAAGGACCTGGTGCTGTTTGTATGTTGATGCTAATTCTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGTAGAAGGACCTGGTGCTGTTTGTATGTTGATGCTAATTCTGCT  500

seq1  TTCCTGGGAGGGGCTGCGGACAAGTTCTGAGTCATACTCAGGTGGCTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGGAGGGGCTGCGGACAAGTTCTGAGTCATACTCAGGTGGCTTCA  550

seq1  TGTGAACCAATCCTCTAGTGAATGAACTAGTCAATCATTGAGTGAATAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACCAATCCTCTAGTGAATGAACTAGTCAATCATTGAGTGAATAGA  600

seq1  TAGGACTTCAGGGTTGAACAGAGGAAAAGAAGGAGGAGAGAGTTAGATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACTTCAGGGTTGAACAGAGGAAAAGAAGGAGGAGAGAGTTAGATCT  650

seq1  TTTTGGACAGGAATATTGGGAGGACAAGTCTCCCGGTTTCAATGGTGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGACAGGAATATTGGGAGGACAAGTCTCCCGGTTTCAATGGTGGTT  700

seq1  CTGTCAGGATTCACCACAGAAGGATTTAGATTTAATAAGGTTTACAAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGGATTCACCACAGAAGGATTTAGATTTAATAAGGTTTACAAGTT  750

seq1  AGGACTTTAGTTGTTGCTCCCAGCAATTGAGTTGCCATTATTTTTGAACT  800
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGGACTTTAGTTGTTGCTCTCAGCAATTGAGTTGCCATTATTTTTGAACT  800

seq1  AAGTTTGTGTTGCAATTTCCTTCACCCTGTGGTTCGTTT-GGGTTCAAGA  849
      ||||||||||||||||||| ||  || |||||||||||| ||||||||||
seq2  AAGTTTGTGTTGCAATTTCTTTACCCTTGTGGTTCGTTTGGGGTTCAAGA  850

seq1  GGGAAAGGTACT-GGCAGCAAAGCATGGGTTTGCCAGATGTGTACTACAA  898
      |||||||||||| |||||||||||||||| ||||||||||||||||||||
seq2  GGGAAAGGTACTGGGCAGCAAAGCATGGG-TTGCCAGATGTGTACTACAA  899

seq1  AAACCGTTGGGATCTTGAAGCATGGGGCTGGTGTGGTAGCAACCCATCAG  948
      || ||||||||||| |||||||||||||||||||||||||||| ||||||
seq2  AACCCGTTGGGATC-TGAAGCATGGGGCTGGTGTGGTAGCAACTCATCAG  948

seq1  TA  950
      ||
seq2  TA  950