BAC Information

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BAC

Clone NameB6Ng01-009F04
Chromosome13 (Build37)
Map Location 24,959,265 - 25,096,749
singlet/doubletdoublet
Overlap geneD130043K22Rik, Aldh5a1, Gpld1, Mrs2l
Upstream geneSlc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap
Downstream geneLOC675430, Dcdc2a, Nrsn1, Tpi-rs8, LOC214973
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009F04.bB6Ng01-009F04.g
ACCDH845296DH845297
length7781,084
definitionDH845296|Mus musculus domesticus DNA, BAC clone: B6Ng01-009F04, 5' end.DH845297|Mus musculus domesticus DNA, BAC clone: B6Ng01-009F04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,095,962 - 25,096,749)(24,959,265 - 24,960,356)
sequence
gaattctgcagagctgggagaggggtgcatgactttaatccccccacaca
gaggcaggcggatctcttgagttcgaggccagcttggtctacatagcaag
ttccaggacaactggggctatataaagaaaccctgtttcaacagagaaaa
gacagacggagagacagacaagcattgggaggatgtgggatttttgttac
tgaatgcattgtaaggggagagctcagtttgcatggattgggttgtgtgt
tcagccggtgtgatgttgctctcttttgagttgggaaaattctgtggtct
tcgttggcctttgaatttcatctgtggtttcatctgatattactcaagct
ttatatttacttattcataaagacagggtgttgtgtggccaaggctacct
taagcttgctgtgtggctgaggatgaggctgatcccctgatcctatcacc
tctgcctccccagtgctggagtcagaggcgcaggctgcctgccaccgcac
tcacgagatggttccattagtgtcctgtgaggtacagttacactagagcc
ttagctaccaagaagcatctgctttttcatggacactaggaatgtctgtt
gactcttaaaaccttggtttacgtttgtatctaacactttctaaatcatc
acacttgacttgcctgctcagaagaccctgagttatttcagtttttagtg
attggttaacagggccctccattgtttgccctgtaagagcagagtctgaa
tcaatgaaggccatcagtggtgcgagcc
gaattcaaggtcatctttagtgacttagggagttccaggccagcctggga
tacatgaaacattgtctaaaacaaactacaaacaaacaaatacagcattc
attaaggtcagatatttgatttgtaattcaaataattactaaggattctt
ttgtgaatcgtgtagcagttgtaagattagcaattggacagagcctttca
gtccgaatgaggttggcttcagtgatagtcagtagcatttcactttacta
atttagtcagagtttattctttaagtggaggataaggatggtgtaacttt
gggtgtccagacaaatgagaatccagtgtttggcttggtttaacagtgta
gagtgctctgcaactgtttttacattcatccagttacaaggttaacccca
cggccggctgagaggtaaaaggtgtggtcataccggttgctcccgagggt
tgttctgtctactagtctgcggatgtggacgcgacagcaatgtgactgct
cgaatctattcggtgtcatgtctacatcctcccccttctccagtgtgaac
atacagtacagttgctcgtttatttgcttgcttgctttctcatacagctc
aggctcttaccacacttgctatgtattgaaggttgaccttcacctcctga
tgaccttttgaccctttcccaagttctgggattctaggcacctgtatccc
catgcctggctgacaaaggagatgcttgtatgagaaaaggcctcacagtt
ttaaaaaaaatcttttgattctgactagcttagttacaaaaatcatacag
gattattagttgatcataataaataagcacataaattttttccctaaatg
aatttgatgaaaagccagcttcctttctagatctatgggtctacatggca
cattgttgtctctttattatttgtttgttgttttgtgatatggagactga
atccaccacgcctttgtagatgtaccatgtaatataaaaaaacaatccac
gctgtggggcggctagcacagtggtctctgtcgttccagctcataccagc
ctgagatcgaaaccgtgtgtttttcctagccaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_25095962_25096749
seq2: B6Ng01-009F04.b_47_824 (reverse)

seq1  GGCTCGGCACCACTGATGGCCTCTCATTGATTTCAGGACCTCTCGCTCTC  50
      ||||| |||||||||||||||| ||||||| |||||   |||| ||||| 
seq2  GGCTC-GCACCACTGATGGCCT-TCATTGA-TTCAG--ACTCT-GCTCTT  44

seq1  ACAGGGCCAAACAATGGAGGGCCCTGTTAACCAAATCACTAAAAAACTGA  100
      |||||| ||||||||||||||||||||||||| ||||||| |||||||||
seq2  ACAGGG-CAAACAATGGAGGGCCCTGTTAACC-AATCACT-AAAAACTGA  91

seq1  ATATACTCAGTGTCTTCTGAGCAGGCAAGTCAAGTGTGATGATTTTAGAA  150
      |   |||||| ||||||||||||||||||||||||||||||| |||||||
seq2  AATAACTCAGGGTCTTCTGAGCAGGCAAGTCAAGTGTGATGA-TTTAGAA  140

seq1  AGTGTTAGATACAAACGTAAACCAAGGTTTTAAGAGTCAACAGACATTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTAGATACAAACGTAAACCAAGGTTTTAAGAGTCAACAGACATTCC  190

seq1  TAGTGTCCATGAAAAAGCAGATGCTTCTTGGTAGCTAAGGCTCTAGTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTCCATGAAAAAGCAGATGCTTCTTGGTAGCTAAGGCTCTAGTGTA  240

seq1  ACTGTACCTCACAGGACACTAATGGAACCATCTCGTGAGTGCGGTGGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTACCTCACAGGACACTAATGGAACCATCTCGTGAGTGCGGTGGCAG  290

seq1  GCAGCCTGCGCCTCTGACTCCAGCACTGGGGAGGCAGAGGTGATAGGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTGCGCCTCTGACTCCAGCACTGGGGAGGCAGAGGTGATAGGATC  340

seq1  AGGGGATCAGCCTCATCCTCAGCCACACAGCAAGCTTAAGGTAGCCTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGATCAGCCTCATCCTCAGCCACACAGCAAGCTTAAGGTAGCCTTGG  390

seq1  CCACACAACACCCTGTCTTTATGAATAAGTAAATATAAAGCTTGAGTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACAACACCCTGTCTTTATGAATAAGTAAATATAAAGCTTGAGTAAT  440

seq1  ATCAGATGAAACCACAGATGAAATTCAAAGGCCAACGAAGACCACAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATGAAACCACAGATGAAATTCAAAGGCCAACGAAGACCACAGAAT  490

seq1  TTTCCCAACTCAAAAGAGAGCAACATCACACCGGCTGAACACACAACCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAACTCAAAAGAGAGCAACATCACACCGGCTGAACACACAACCCA  540

seq1  ATCCATGCAAACTGAGCTCTCCCCTTACAATGCATTCAGTAACAAAAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGCAAACTGAGCTCTCCCCTTACAATGCATTCAGTAACAAAAATC  590

seq1  CCACATCCTCCCAATGCTTGTCTGTCTCTCCGTCTGTCTTTTCTCTGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATCCTCCCAATGCTTGTCTGTCTCTCCGTCTGTCTTTTCTCTGTTG  640

seq1  AAACAGGGTTTCTTTATATAGCCCCAGTTGTCCTGGAACTTGCTATGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGGTTTCTTTATATAGCCCCAGTTGTCCTGGAACTTGCTATGTAG  690

seq1  ACCAAGCTGGCCTCGAACTCAAGAGATCCGCCTGCCTCTGTGTGGGGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCTGGCCTCGAACTCAAGAGATCCGCCTGCCTCTGTGTGGGGGGA  740

seq1  TTAAAGTCATGCACCCCTCTCCCAGCTCTGCAGAATTC  788
      ||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTCATGCACCCCTCTCCCAGCTCTGCAGAATTC  778

seq1: chr13_24959265_24960356
seq2: B6Ng01-009F04.g_69_1152

seq1  GAATTCAAGGTCATCTTTAGTGACTTAGGGAGTTCCAGGCCAGCCTGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGTCATCTTTAGTGACTTAGGGAGTTCCAGGCCAGCCTGGGA  50

seq1  TACATGAAACATTGTCTAAAACAAACTACAAACAAACAAATACAGCATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGAAACATTGTCTAAAACAAACTACAAACAAACAAATACAGCATTC  100

seq1  ATTAAGGTCAGATATTTGATTTGTAATTCAAATAATTACTAAGGATTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGTCAGATATTTGATTTGTAATTCAAATAATTACTAAGGATTCTT  150

seq1  TTGTGAATCGTGTAGCAGTTGTAAGATTAGCAATTGGACAGAGCCTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAATCGTGTAGCAGTTGTAAGATTAGCAATTGGACAGAGCCTTTCA  200

seq1  GTCCGAATGAGGTTGGCTTCAGTGATAGTCAGTAGCATTTCACTTTACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGAATGAGGTTGGCTTCAGTGATAGTCAGTAGCATTTCACTTTACTA  250

seq1  ATTTAGTCAGAGTTTATTCTTTAAGTGGAGGATAAGGATGGTGTAACTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTCAGAGTTTATTCTTTAAGTGGAGGATAAGGATGGTGTAACTTT  300

seq1  GGGTGTCCAGACAAATGAGAATCCAGTGTTTGGCTTGGTTTAACAGTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTCCAGACAAATGAGAATCCAGTGTTTGGCTTGGTTTAACAGTGTA  350

seq1  GAGTGCTCTGCAACTGTTTTTACATTCATCCAGTTACAAGGTTAACCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTCTGCAACTGTTTTTACATTCATCCAGTTACAAGGTTAACCCCA  400

seq1  CGGCCGGCTGAGAGGTAAAAGGTGTGGTCATACCGGTTGCTCCCGAGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCGGCTGAGAGGTAAAAGGTGTGGTCATACCGGTTGCTCCCGAGGGT  450

seq1  TGTTCTGTCTACTAGTCTGCGGATGTGGACGCGACAGCAATGTGACTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGTCTACTAGTCTGCGGATGTGGACGCGACAGCAATGTGACTGCT  500

seq1  CGAATCTATTCGGTGTCATGTCTACATCCTCCCCCTTCTCCAGTGTGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATCTATTCGGTGTCATGTCTACATCCTCCCCCTTCTCCAGTGTGAAC  550

seq1  ATACAGTACAGTTGCTCGTTTATTTGCTTGCTTGCTTTCTCATACAGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTACAGTTGCTCGTTTATTTGCTTGCTTGCTTTCTCATACAGCTC  600

seq1  AGGCTCTTACCACACTTGCTATGTATTGAAGGTTGACCTTCACCTCCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTTACCACACTTGCTATGTATTGAAGGTTGACCTTCACCTCCTGA  650

seq1  TGACCTTTTGACCCTTTCCCAAGTTCTGGGATTCTAGGCACCTGTATCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTTTGACCCTTTCCCAAGTTCTGGGATTCTAGGCACCTGTATCCC  700

seq1  CATGCCTGGCTGACAAAGGAGATGCTTGTATGAGAAAAGGCCTCACAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTGGCTGACAAAGGAGATGCTTGTATGAGAAAAGGCCTCACAGTT  750

seq1  TTAAAAAAAATCTTTTGATTCTGACTAGCTTAGTTACAAAAATCATACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAATCTTTTGATTCTGACTAGCTTAGTTACAAAAATCATACAG  800

seq1  GATTATTAGTTGATCATAATAAATAAGCACATAAATTTTTTCCCTAAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTAGTTGATCATAATAAATAAGCACATAAATTTTTTCCCTAAATG  850

seq1  AATTTGATGAAAAGCCAGCTTCC-TTCTAGATCTATGGGTCTACATGGCA  899
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AATTTGATGAAAAGCCAGCTTCCTTTCTAGATCTATGGGTCTACATGGCA  900

seq1  CATTGTTGCTCTCTTTTATTATTTGTTTGTTTGTTTTGTGATATGGAGAC  949
      |||||||| |||| ||||||||||||||| ||||||||||||||||||||
seq2  CATTGTTG-TCTC-TTTATTATTTGTTTG-TTGTTTTGTGATATGGAGAC  947

seq1  TGAACCCACCACGCCTTTGTAGATGTAGCATGTAATTATAAAAAAACAAT  999
      |||| |||||||||||||||||||||| ||||||| ||||||||||||||
seq2  TGAATCCACCACGCCTTTGTAGATGTACCATGTAA-TATAAAAAAACAAT  996

seq1  CCACGCTGT-GGGCGGCTAGGCACCAGTGGTCTCTGTCTGTTCCCAGCCC  1048
      ||||||||| ||||||||| ||| |||||||||||||| ||| ||||| |
seq2  CCACGCTGTGGGGCGGCTA-GCA-CAGTGGTCTCTGTC-GTT-CCAGCTC  1042

seq1  AGTACATAGCCTGAGATCGAGACCGTGTGTTTTTCCTAGCCAAC  1092
      | |||  ||||||||||||| |||||||||||||||||||||||
seq2  A-TAC-CAGCCTGAGATCGAAACCGTGTGTTTTTCCTAGCCAAC  1084