BAC Information

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BAC

Clone NameB6Ng01-009F05
Chromosome13 (Build37)
Map Location 24,559,416 - 24,560,355
singlet/doubletsinglet
Overlap geneCmah
Upstream geneBtn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017
Downstream gene5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1, Tpi-rs8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009F05.g
ACCDH845298
length926
definitionDH845298|Mus musculus domesticus DNA, BAC clone: B6Ng01-009F05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttggtgcctggtctcagctctccccagaggacaatcttgctct
gctgtttcactaactgaatttttgagacccttaaaacaggacagctatct
gtctgtttgtggtgagcccactttaccgagttcccattactgaaagttac
cctcgtacaagatgcacaaaagcatcatgttggagtgttagtgaaggtga
ccacacccccttagatgtaggaaggtgaacctgctccctgaagaatggcc
tggctgaactagccccagaaatggcacacacaagaactcaggaaagcatg
ggggacttgccaagagatgcagacatgactcatccaaccactgtttcaaa
tggtaagaagcagattgtctatacttgtgtggcactgagacactgtggta
tcatctgcccccacccccagcaataggtgacaagtttttgaagacgttat
atccacagaagtgtgggtatgcagagatataggccaggaagacacagccc
tttatcaagagtcatcctgagagagggcagagggagaggcaggaaacaga
caggtttcacaggaggggcaactggaaccataagggctataacagacgac
acatactcctacgttctttatattttaaaatacaattttaagacactaag
gggtgggggctgcgtgtggtagctcacacctgttatctcagtattttgga
agctgagccagggaggatcatgggaggtttggggacagcttagttctgaa
tgagttctctgctgatctggggtatagaatgaagcttgtctcaccaactc
aaccaaacaaggaaaccaattttaatgaaattagtttaaaaaagtaacga
tatttcaatgcatctcgctagaggctttacttatacgttctaattttttt
aaaattctactctaattatttaattt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_24559416_24560355
seq2: B6Ng01-009F05.g_69_994 (reverse)

seq1  AAAATAAACTAATTAGAGTAGAATTTTTAAAAAAATTAGAACGTCTAAGT  50
       |||| || |||||||||||||| |||||||||||||||||||| |||||
seq2  -AAATTAAATAATTAGAGTAGAA-TTTTAAAAAAATTAGAACGTATAAGT  48

seq1  AAAGCCCTCTAGCGAG-TGCATTGAAATATTCGTTTACATTTTTTTAAAC  99
      |||| ||||||||||| |||||||||||| |||||   | ||||||||||
seq2  AAAG-CCTCTAGCGAGATGCATTGAAATA-TCGTT---ACTTTTTTAAAC  93

seq1  TTATTTCTTTTAAAATTTTGGTTTCCTTTGTTTGGTTGGGTTGGTTGAGA  149
      | ||||| || |||   ||||||||| ||||||||||| ||||| |||||
seq2  TAATTTCATTAAAA---TTGGTTTCC-TTGTTTGGTTGAGTTGG-TGAGA  138

seq1  CAGGCCTTCGTTCTATACCCCAGATCAGCCTGGAACTCATTTCAGAACCT  199
      || | |||| |||||||||||||||||||   ||||||| ||||||| ||
seq2  CAAG-CTTCATTCTATACCCCAGATCAGCAGAGAACTCA-TTCAGAA-CT  185

seq1  AAGCTGTCCCCAAACCTCCCATGATCCTCCCTGGCTCAGCTTCCAAAATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTCCCCAAACCTCCCATGATCCTCCCTGGCTCAGCTTCCAAAATA  235

seq1  CTGAGATAACAGGTGTGAGCTACCACACGCAGCCCCCACCCCTTAGTGTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATAACAGGTGTGAGCTACCACACGCAGCCCCCACCCCTTAGTGTC  285

seq1  TTAAAATTGTATTTTAAAATATAAAGAACGTAGGAGTATGTGTCGTCTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTGTATTTTAAAATATAAAGAACGTAGGAGTATGTGTCGTCTGT  335

seq1  TATAGCCCTTATGGTTTCAGTTGCCCCTCCTGTGAAACCTGTCTGTTTCC  399
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TATAGCCCTTATGGTTCCAGTTGCCCCTCCTGTGAAACCTGTCTGTTTCC  385

seq1  TGCCTCTCCCTCTGCCCTCTCTCAGGATGACTCTTGATAAAGGGCTGTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTCCCTCTGCCCTCTCTCAGGATGACTCTTGATAAAGGGCTGTGT  435

seq1  CTTCCTGGCCTATATCTCTGCATACCCACACTTCTGTGGATATAACGTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGGCCTATATCTCTGCATACCCACACTTCTGTGGATATAACGTCT  485

seq1  TCAAAAACTTGTCACCTATTGCTGGGGGTGGGGGCAGATGATACCACAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAACTTGTCACCTATTGCTGGGGGTGGGGGCAGATGATACCACAGT  535

seq1  GTCTCAGTGCCACACAAGTATAGACAATCTGCTTCTTACCATTTGAAACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGTGCCACACAAGTATAGACAATCTGCTTCTTACCATTTGAAACA  585

seq1  GTGGTTGGATGAGTCATGTCTGCATCTCTTGGCAAGTCCCCCATGCTTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGGATGAGTCATGTCTGCATCTCTTGGCAAGTCCCCCATGCTTTC  635

seq1  CTGAGTTCTTGTGTGTGCCATTTCTGGGGCTAGTTCAGCCAGGCCATTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTCTTGTGTGTGCCATTTCTGGGGCTAGTTCAGCCAGGCCATTCT  685

seq1  TCAGGGAGCAGGTTCACCTTCCTACATCTAAGGGGGTGTGGTCACCTTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGAGCAGGTTCACCTTCCTACATCTAAGGGGGTGTGGTCACCTTCA  735

seq1  CTAACACTCCAACATGATGCTTTTGTGCATCTTGTATGAGGGTAACTTTC  799
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTAACACTCCAACATGATGCTTTTGTGCATCTTGTACGAGGGTAACTTTC  785

seq1  ACTAATGGGAACTCCGTAAAGTGGGCTCACCACAAACAGACAGATAGCTG  849
      | |||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGTAATGGGAACTCGGTAAAGTGGGCTCACCACAAACAGACAGATAGCTG  835

seq1  TCCTGTTTTAAGGGTCTCAAAAATTCAGTTACTGAAACAGCAGAGCAAGA  899
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCCTGTTTTAAGGGTCTCAAAAATTCAGTTAGTGAAACAGCAGAGCAAGA  885

seq1  CTGTCCTCTGGGGAGAGCTGAGACCAGGCACCAAAGAATTC  940
       ||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTCTGGGGAGAGCTGAGACCAGGCACCAAAGAATTC  926