BAC Information

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BAC

Clone NameB6Ng01-009N10
Chromosome13 (Build37)
Map Location 46,393,408 - 46,601,920
singlet/doubletdoublet
Overlap geneGm1574, Rbm24, Cap2
Upstream geneMylip, Gmpr, Atxn1, 5033430I15Rik, ENSMUSG00000062282
Downstream geneC78339, Nup153, Kif13a, LOC544928, Nhlrc1, Tpmt, Aof1, Dek, LOC100039761, Ibrdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009N10.bB6Ng01-009N10.g
ACCDH845673DH845674
length1,103847
definitionDH845673|Mus musculus domesticus DNA, BAC clone: B6Ng01-009N10, 5' end.DH845674|Mus musculus domesticus DNA, BAC clone: B6Ng01-009N10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,393,408 - 46,394,522)(46,601,366 - 46,601,920)
sequence
gaattccttacgctgagctacactttcacacacctcacctccatattttt
ttgtttagttttcggccttgagatctctctcatgagtcctttgccatctg
gttccacggagcacattcttggcctttgttctaataacctggtgttttga
aggcatggaatgcattttaccattgacacttctgtggttggggcaagatt
tctgtgtctcagcaggtaaaagttcagatgcctaagctaatgaaaaggga
aagaggacaaccccataacgttgtcctctgatatctatccacatgtagag
acatattcatgcccttgtacacacacacacacacacacacacacacgtgc
gcgcacacacgtgcgtgcacacacattagtaattctaataataattctga
tcttaacagatttcaagtttttattgcatttatctgccagctgaaaagtt
ttttttttttttgaaatatgcattttaaactgtttcttgctcctgttcct
ctcctaggccaaggcagtggtaaatcacatctccactaaaaacgaaatgt
cttcctccaggtggacactactgaaaagccactgagaaagccaccagcca
gactgaaaaagcttaaggtgaaaaaggaagtgaaggatttcacaatccaa
gacatagaagaaaagatgcaggcagcagaggagcgccgaaaggtacgaga
gtggtggctgctgagtctgaggagccgcctgcgagctctaatgagcatgc
gccagaccagtggtctatcagcagcctgagacagaatgcatacgcagaaa
gtctctgcatttcaatgacctgtgtgtttcttgcacaggacacaatgctt
tttgtttttacccctcttcaaaaattactttttgagttgtgtgaaaatga
cgcagcatcatgaactccgttggagattggtgtttcgtctatacggctaa
ataaatactgttcattattctgaattaagtcaactttggggaattatcat
tgggtagagaaagagacaatcatgcaagggtgggtactgagctaagatgg
ttctgaagacgcaaatcagttctctagtttgtgagcactgaactccaact
gga
gaattcaggggccgtggaggaaaaacctgttaggaacaaatatccctggg
gttgtcggagctgctgtgaaacagagtcctctggaggtgacaagatggct
ctactcatgtcctcctagcagccgtggatgtagaacaagttcaaagcagt
cttcattctagcatggtgggggctgggcactcaggagcccctattcctca
ctgagaagccattgacagtggatggctccgagggggagggaaagaaagtc
ggtttccttaagacaggaatgaaaggtgaatgtggtaaaaaaaatacttt
gtaaacatatatgaaaaattttaaaagtaataaaaatattgtatttaaaa
atacactaaaagccggtggtgatggcccacagtttttatcccagcatggg
aggcagaggtaggtgggtctctgagtacaaggctagcctggtctacagag
caagttctgggacagccagggctacacagagaaaccttgtttcaaagaaa
ctaatcaagtagaagaaagacactccagagtcttttcgcagcccccctgc
cccatcctagccaataataactgatctgttcataaagatttcttagaaac
agtgctccaggagtggtttcctgcattatgtggtctttttcattacgtgg
cttctttcacttagcaggatgctctcaaggttcatagtatggcacccctt
tctgtagacacacctatgtgcacacagaggtcagaggtcaatgtcagatg
tctttcctcagtcactctcctgtatctgctttccccactgctgggaaccc
attgcacaagccactgcacagggtttgtaggtgggtgctgaggctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_46393408_46394522
seq2: B6Ng01-009N10.b_46_1148

seq1  GAATTCCTTACGCTGAGCTACACTTTCACACACCTCACCTCCATATTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTACGCTGAGCTACACTTTCACACACCTCACCTCCATATTTTT  50

seq1  TTGTTTAGTTTTCGGCCTTGAGATCTCTCTCATGAGTCCTTTGCCATCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTAGTTTTCGGCCTTGAGATCTCTCTCATGAGTCCTTTGCCATCTG  100

seq1  GTTCCACGGAGCACATTCTTGGCCTTTGTTCTAATAACCTGGTGTTTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCACGGAGCACATTCTTGGCCTTTGTTCTAATAACCTGGTGTTTTGA  150

seq1  AGGCATGGAATGCATTTTACCATTGACACTTCTGTGGTTGGGGCAAGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGGAATGCATTTTACCATTGACACTTCTGTGGTTGGGGCAAGATT  200

seq1  TCTGTGTCTCAGCAGGTAAAAGTTCAGATGCCTAAGCTAATGAAAAGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTCTCAGCAGGTAAAAGTTCAGATGCCTAAGCTAATGAAAAGGGA  250

seq1  AAGAGGACAACCCCATAACGTTGTCCTCTGATATCTATCCACATGTAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGACAACCCCATAACGTTGTCCTCTGATATCTATCCACATGTAGAG  300

seq1  ACATATTCATGCCCTTGTACACACACACACACACACACACACACACGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTCATGCCCTTGTACACACACACACACACACACACACACACGTGC  350

seq1  GCGCACACACGTGCGTGCACACACATTAGTAATTCTAATAATAATTCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCACACACGTGCGTGCACACACATTAGTAATTCTAATAATAATTCTGA  400

seq1  TCTTAACAGATTTCAAGTTTTTATTGCATTTATCTGCCAGCTGAAAAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAACAGATTTCAAGTTTTTATTGCATTTATCTGCCAGCTGAAAAGTT  450

seq1  TTTTTTTTTTTTGAAATATGCATTTTAAACTGTTTCTTGCTCCTGTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTGAAATATGCATTTTAAACTGTTTCTTGCTCCTGTTCCT  500

seq1  CTCCTAGGCCAAGGCAGTGGTAAATCACATCTCCACTAAAAACGAAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAGGCCAAGGCAGTGGTAAATCACATCTCCACTAAAAACGAAATGT  550

seq1  CTTCCTCCAGGTGGACACTACTGAAAAGCCACTGAGAAAGCCACCAGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCCAGGTGGACACTACTGAAAAGCCACTGAGAAAGCCACCAGCCA  600

seq1  GACTGAAAAAGCTTAAGGTGAAAAAGGAAGTGAAGGATTTCACAATCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAAAAAGCTTAAGGTGAAAAAGGAAGTGAAGGATTTCACAATCCAA  650

seq1  GACATAGAAGAAAAGATGCAGGCAGCAGAGGAGCGCCGAAAGGTACGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAGAAGAAAAGATGCAGGCAGCAGAGGAGCGCCGAAAGGTACGAGA  700

seq1  GTGGTGGCTGCTGAGTCTGAGGAGCCGCCTGCGAGCTCTAATGAGCATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGCTGCTGAGTCTGAGGAGCCGCCTGCGAGCTCTAATGAGCATGC  750

seq1  GCCAGACCAGTGGTCTATCAGCAGCCTGAGACAGAATGCATACGCAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGACCAGTGGTCTATCAGCAGCCTGAGACAGAATGCATACGCAGAAA  800

seq1  GTCTCTGCATTTCAATGACCTGTGTGTTTCTTGCACAGGACACAATGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGCATTTCAATGACCTGTGTGTTTCTTGCACAGGACACAATGCTT  850

seq1  TTTGTTTTTACCCCTC-TCAAAAATTAC-TTTTGAGTTGTGTGAAAATGA  898
      |||||||||||||||| ||||||||||| |||||||||||||||||||||
seq2  TTTGTTTTTACCCCTCTTCAAAAATTACTTTTTGAGTTGTGTGAAAATGA  900

seq1  CGCAGCACCATGAACTCCGTTGGAGATTGTTGTTTCGTCTATACGGCCTA  948
      ||||||| ||||||||||||||||||||| |||||||||||||||| |||
seq2  CGCAGCATCATGAACTCCGTTGGAGATTGGTGTTTCGTCTATACGG-CTA  949

seq1  AATAAATACTGTTCATTATTCTGAATTAAGTCAACTTTGGGGGAATTTAC  998
      ||||||||||||||||||||||||||||||||||||||||||  | ||| 
seq2  AATAAATACTGTTCATTATTCTGAATTAAGTCAACTTTGGGG--AATTAT  997

seq1  CATTGGGGTTAGAGGAAAGAGGACAACCAGGGCAGGGGTGGGTACTGAGC  1048
      |||||||  |||| |||||| ||||| ||  ||| |||||||||||||||
seq2  CATTGGG--TAGA-GAAAGA-GACAATCA-TGCAAGGGTGGGTACTGAGC  1042

seq1  TAAGAGTGGGTTCTGAAGACGGCCAAATCAGCTC-CTACAGTTGTGAGCA  1097
      |||||   |||||||||||||  |||||||| || |||   |||||||||
seq2  TAAGA--TGGTTCTGAAGACG--CAAATCAGTTCTCTA-GTTTGTGAGCA  1087

seq1  CCTGAACCCACAACTGGA  1115
       |||||| | ||||||||
seq2  -CTGAACTC-CAACTGGA  1103

seq1: chr13_46601366_46601920
seq2: B6Ng01-009N10.g_69_623 (reverse)

seq1  ATGGGGCAGGGGGGCTGCGAAAAGACTCTGGAGTGTCTTTCTTCTACTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGCAGGGGGGCTGCGAAAAGACTCTGGAGTGTCTTTCTTCTACTTG  50

seq1  ATTAGTTTCTTTGAAACAAGGTTTCTCTGTGTAGCCCTGGCTGTCCCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTTCTTTGAAACAAGGTTTCTCTGTGTAGCCCTGGCTGTCCCAGA  100

seq1  ACTTGCTCTGTAGACCAGGCTAGCCTTGTACTCAGAGACCCACCTACCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTCTGTAGACCAGGCTAGCCTTGTACTCAGAGACCCACCTACCTC  150

seq1  TGCCTCCCATGCTGGGATAAAAACTGTGGGCCATCACCACCGGCTTTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCCATGCTGGGATAAAAACTGTGGGCCATCACCACCGGCTTTTAG  200

seq1  TGTATTTTTAAATACAATATTTTTATTACTTTTAAAATTTTTCATATATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTTTAAATACAATATTTTTATTACTTTTAAAATTTTTCATATATG  250

seq1  TTTACAAAGTATTTTTTTTACCACATTCACCTTTCATTCCTGTCTTAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAAAGTATTTTTTTTACCACATTCACCTTTCATTCCTGTCTTAAGG  300

seq1  AAACCGACTTTCTTTCCCTCCCCCTCGGAGCCATCCACTGTCAATGGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCGACTTTCTTTCCCTCCCCCTCGGAGCCATCCACTGTCAATGGCTT  350

seq1  CTCAGTGAGGAATAGGGGCTCCTGAGTGCCCAGCCCCCACCATGCTAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGAGGAATAGGGGCTCCTGAGTGCCCAGCCCCCACCATGCTAGAA  400

seq1  TGAAGACTGCTTTGAACTTGTTCTACATCCACGGCTGCTAGGAGGACATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACTGCTTTGAACTTGTTCTACATCCACGGCTGCTAGGAGGACATG  450

seq1  AGTAGAGCCATCTTGTCACCTCCAGAGGACTCTGTTTCACAGCAGCTCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAGCCATCTTGTCACCTCCAGAGGACTCTGTTTCACAGCAGCTCCG  500

seq1  ACAACCCCAGGGATATTTGTTCCTAACAGGTTTTTCCTCCACGGCCCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCCCAGGGATATTTGTTCCTAACAGGTTTTTCCTCCACGGCCCCTG  550

seq1  AATTC  555
      |||||
seq2  AATTC  555