BAC Information

Click to search

BAC

Clone NameB6Ng01-010H23
Chromosome13 (Build37)
Map Location 5,217,269 - 5,218,425
singlet/doubletsinglet
Overlap genenone
Upstream geneAkr1c19, Akr1c12, Akr1c6, Akr1c20, Akr1c21, Akr1e1, EG432721, EG432723
Downstream gene1700016G22Rik, Klf6, LOC100039388
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010H23.bB6Ng01-010H23.g
ACCDH846151DH846152
length1,1981,154
definitionDH846151|Mus musculus domesticus DNA, BAC clone: B6Ng01-010H23, 5' end.DH846152|Mus musculus domesticus DNA, BAC clone: B6Ng01-010H23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaacagaggaatctctaatagccgagaagcaaataaagaaatg
ttcaatgtccttagttatcagggaaatgcattacaatcactaattaaact
ccactcaaattcccctggcagcagtgcattctttgctacctgccccagtg
ttctgaatgaaagacacacgcatgaagctttaattttttttttcatttta
ggatttttttattagatattttctttatatacatttcaaatgctatcctg
aatgttccctataccctccctccgccctgctcccctacccacctactcct
gcttcttggccctggcattcccctgtactggggcatgtaaagtttgcaat
accaaggggcctctcttcccagtcgtggccgactagaccatcttctgcta
catatgcagctagagatacaatctaatcctaaatctgatcgtggactaat
atccaatatatacaaagagctcaagaagctggactccagaaattcaaata
accccattaaaaattggggttcagaggtaaacaaagaattctcaactgag
gaataccgcatggctgagaagcacctgaaaaaatgttcaacatccttaat
catcagggaaatgcaaaacaaaacaaccttgagattctatctcacaccag
tcagaatggctaagatcaaaagaaattcaggtgacttaagcagagactta
tactgattgttttatctgcctgtggacactgtcctcctaactgggctgtt
ttggctgggctcagaggaaaggatatacctggtcctgcagtgacttgtgg
tgttagagtgggttgatacccagggagaacctcacccttctcagagaaaa
ggagagagtgcgaggggaagtagccatgcgaaggaggccttgagggaagg
gatgagattgtcatttttatagatattttcttcatttacatttcaaatgc
tatcccaagatccctatactctccccccaccctgatgtcattatgtgaat
aaatataataatataggaacaaatttaaataaacatattatttttcttga
attgcctaattgttttattactgttctaattacgaaccactaaccactct
taaagtaacatggaatccctatggctccgactgaaattatacctggaaat
ggtctacacggggttatacctgtaccatgctcacaggtgtggatacat
gaattctttttttaaaaatctccttttatctccaaattttcacattatgt
tgatgtaattccttttaaaaattcaacctgctttattttcttgaatttta
caatatgactcataattttgaaaaatggtcattaaatagccaaaacattt
agattaggaaactattttggattttctgttaaatttatagatgtaagaaa
taatcaggtgatatgtgtgtgttgtttaataatcgaagattattaaagag
gcataaaaatgagaagaattcaggtaaatgacccataaaaaagcagaggg
gctcaggagatatgttagttgataatgttcctgccatataagcaagaaaa
gctgaatgtaatctccaacacccagaaagaatctagacatggcaatgcac
aggtatttccctagcacaggggcagtgcaggcaaacaaatctaaagaggt
tgcaggctatgcaggccgcccttttggtgagctagatgtttattaaggga
ccctgtctcataagaagaggtagagagtactatttgaagacacccagtgt
taatccctgacctcgattttacacatgcacctgtagatccacaacaaccc
ctatattctatttaattttgctaacacttgcaaaagaggagaaaaagaaa
agaagtttaaaaaagaccagtgcataatgagaagctgaggccaagtggca
atgcagttcaccaggaatatttgaagaactccttactcagagccatgtta
ttgcttatcttacttcagaaaatactagatattgatctataccatgcctt
ccctccatacatattttgatatgctatagacaggaacataaagaaagcat
tttaacacttagaatatgttttagaaggaaatgaaaatgaaagaaaatat
gtaaaaaacggaatatagctgacagaggaatgaagtttatacaagcaaat
gtacagtttcaaaagatggtcagagtcattagtcagtgaaacaccaaatg
taaagccgggatattatagactaatacatcttaacttccaaagctatttt
tggaatttgctgttgagttaatacaatgtgaaatgacagtggatggtttc
tggttctaaacctacattcattaagaaatgtgcctcattccttgctaaag
aatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_5217269_5218425
seq2: B6Ng01-010H23.g_63_1216 (reverse)

seq1  GATTCCTTTTTAGCAAGGAATAAGTGCACATTTTCTTTATG-ATGTAGGT  49
      |||||   ||||||||||||| || ||||| |||||| ||| ||||||||
seq2  GATTC---TTTAGCAAGGAATGAG-GCACA-TTTCTTAATGAATGTAGGT  45

seq1  TATGAAACAGAAACAATCAACTGTTCATTTCACATTTGTATAAACTCAAC  99
      |  ||| ||||||| ||| |||| |||||||||| |||||| ||||||||
seq2  TTAGAACCAGAAACCATCCACTG-TCATTTCACA-TTGTATTAACTCAAC  93

seq1  AGCAAAT--CCAAAATAGCCTTGGAAGTT-AGATGTATTAGTCTAT-ATA  145
      |||||||  | |||||||| ||||||||| |||||||||||||||| |||
seq2  AGCAAATTCCAAAAATAGCTTTGGAAGTTAAGATGTATTAGTCTATAATA  143

seq1  TCCCGGCTTTACATTT-GTGTTTCACTGACTAATGACTCTGACCATCTTT  194
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCCCGGCTTTACATTTGGTGTTTCACTGACTAATGACTCTGACCATCTTT  193

seq1  TGAAACTGTACATTTGCTTGTATAAACCTTCATTCCTCTGTCAGCTATAT  244
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGAAACTGTACATTTGCTTGTATAAA-CTTCATTCCTCTGTCAGCTATAT  242

seq1  TCCGTTTTTTACATATTTTTCTTTCATTTTCATTTCCTTCTAAAACATAT  294
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCCGTTTTTTACATA-TTTTCTTTCATTTTCATTTCCTTCTAAAACATAT  291

seq1  TCTAAGTGTTTAAAATGCTTTCTTTATGTTCCTGTCTATAGCATATCAAA  344
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTG-TTAAAATGCTTTCTTTATGTTCCTGTCTATAGCATATCAAA  340

seq1  ATATGTATGGA-GGAAGGCATGGTATAGATCAATATCTAGTATTTTCTGA  393
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATGGAGGGAAGGCATGGTATAGATCAATATCTAGTATTTTCTGA  390

seq1  AGTAAGATAAGCAATAACATGGCTCTGAGTAAGGAGTTCTTCAAATATTC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGATAAGCAATAACATGGCTCTGAGTAAGGAGTTCTTCAAATATTC  440

seq1  CTGGTGAACTGCATTGCCACTTGGCCTCAGCTTCTCATTATGCACTGGTC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGAACTGCATTGCCACTTGGCCTCAGCTTCTCATTATGCACTGGTC  490

seq1  TTTTTTAAACTTCTTTTCTTTTTCTCCTCTTTTGCAAGTGTTAGCAAAAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAACTTCTTTTCTTTTTCTCCTCTTTTGCAAGTGTTAGCAAAAT  540

seq1  TAAATAGAATATAGGGGTTGTTGTGGATCTACAGGTGCATGTGTAAAATC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGAATATAGGGGTTGTTGTGGATCTACAGGTGCATGTGTAAAATC  590

seq1  GAGGTCAGGGATTAACACTGGGTGTCTTCAAATAGTACTCTCTACCTCTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCAGGGATTAACACTGGGTGTCTTCAAATAGTACTCTCTACCTCTT  640

seq1  CTTATGAGACAGGGTCCCTTAATAAACATCTAGCTCACCAAAAGGGCGGC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGAGACAGGGTCCCTTAATAAACATCTAGCTCACCAAAAGGGCGGC  690

seq1  CTGCATAGCCTGCAACCTCTTTAGATTTGTTTGCCTGCACTGCCCCTGTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATAGCCTGCAACCTCTTTAGATTTGTTTGCCTGCACTGCCCCTGTG  740

seq1  CTAGGGAAATACCTGTGCATTGCCATGTCTAGATTCTTTCTGGGTGTTGG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGAAATACCTGTGCATTGCCATGTCTAGATTCTTTCTGGGTGTTGG  790

seq1  AGATTACATTCAGCTTTTCTTGCTTATATGGCAGGAACATTATCAACTAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTACATTCAGCTTTTCTTGCTTATATGGCAGGAACATTATCAACTAA  840

seq1  CATATCTCCTGAGCCCCTCTGCTTTTTTATGGGTCATTTACCTGAATTCT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTCCTGAGCCCCTCTGCTTTTTTATGGGTCATTTACCTGAATTCT  890

seq1  TCTCATTTTTATGCCTCTTTAATAATCTTCGATTATTAAACAACACACAC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTTTTATGCCTCTTTAATAATCTTCGATTATTAAACAACACACAC  940

seq1  ATATCACCTGATTATTTCTTACATCTATAAATTTAACAGAAAATCCAAAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCACCTGATTATTTCTTACATCTATAAATTTAACAGAAAATCCAAAA  990

seq1  TAGTTTCCTAATCTAAATGTTTTGGCTATTTAATGACCATTTTTCAAAAT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCCTAATCTAAATGTTTTGGCTATTTAATGACCATTTTTCAAAAT  1040

seq1  TATGAGTCATATTGTAAAATTCAAGAAAATAAAGCAGGTTGAATTTTTAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGTCATATTGTAAAATTCAAGAAAATAAAGCAGGTTGAATTTTTAA  1090

seq1  AAGGAATTACATCAACATAATGTGAAAATTTGGAGATAAAAGGAGATTTT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATTACATCAACATAATGTGAAAATTTGGAGATAAAAGGAGATTTT  1140

seq1  TAAAAAAAGAATTC  1157
      ||||||||||||||
seq2  TAAAAAAAGAATTC  1154