BAC Information

Click to search

BAC

Clone NameB6Ng01-010M13
Chromosome13 (Build37)
Map Location 34,230,674 - 34,353,835
singlet/doubletdoublet
Overlap gene2310047M15Rik, 3110004L20Rik
Upstream geneSerpinb9c, Serpinb9d, Serpinb9e, Serpinb9f, OTTMUSG00000000724, Serpinb9g, LOC100041370, EG619715, LOC382743, OTTMUSG00000000712, LOC193403, Vmn2r-ps94, OTTMUSG00000000720, Serpinb6c, Serpinb6a, Nqo2, 4930482L21Rik, Ripk1, Bphl, Tubb2a, LOC100042686, Tubb2b
Downstream geneLOC620132, EG666666, 1300014I06Rik, D0H6S2654E, EG432746, LOC666677, Prpf4b, 4933417A18Rik, LOC666697, 1810022C23Rik, Peci
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010M13.bB6Ng01-010M13.g
ACCDH846352DH846353
length1,058985
definitionDH846352|Mus musculus domesticus DNA, BAC clone: B6Ng01-010M13, 5' end.DH846353|Mus musculus domesticus DNA, BAC clone: B6Ng01-010M13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,352,770 - 34,353,835)(34,230,674 - 34,231,663)
sequence
gaattcacatggattatgtccagtccctctgcctgggaatgtccccatgt
gtctttagacaaaatccttgaagtaagcaggaggattatccactaagatg
aattattcatggaaaattaagaatgaaaaatattttcttaaaaaattata
tataaactgcctactctagtgacaaaattaagttaaaaatagatccagta
ctgggaaagaccatagcattttaattagctcagcatctccacaggtctgg
ctcagtggtaagatggtactactgggcctgtacatatttttccctgtgag
cttaagtagagcttgtatgtagccttcccaagctactacctgccttccaa
aagcatacatctaggaaataaaaggctgctactaggcaatgctggccttc
tcctcgtgcatacattgccactagtcccctcctccctttcctgacctcta
tgattcctatccatccaccccttccacaaaaagggaaatggctctccact
ctattgttatctttttggcataacttattgaaatatttgtttatttgtct
gaaaccttacaattaaattgtctatccttgacttattttcagtttctaat
ctgacccactttattttgaaaattggccaaattgaaagaaactaaagggc
cttttaaacataagtcattctggactagagaccttttcaggatttgccaa
agactgtgggttcttccggaggaataaatgactatcctgtgtacacatga
gtgtaactttatagaattacacctgctggctctgcatctccatgtgatgc
cctccaccacttccaagcatccacaggaagggccttccttgctaggtact
gagcagatacccagaacagtgctgaaccccccaggttcagaatcatgggt
cacgtcaacctctacttctataattccccagttgcagatagcaacaaaat
aaaaaccagagtgcccaagagcaactgtgttatggggacaagagccttgg
ggggagctgactgcattgcagcatgctgggttcctgtgaaaataaagtgg
ggaggggc
gaattccattaccaggaatttgttcccatgtagcacacacacctgtattc
tggaaacctatttgaaccatgctgcacctgagagagaaaacccagtgcct
atactgtctttaaagtatactgctcagacacagtttttatcatgatcagc
aaccccaggaagtaaagactgggagttgagacttgctcataatgcccaca
agctgctgtgattccaggctcaggaccaagcacaatgctattaggctaaa
catccttccaagactcacaggaagactagatcacaaatagatgacaatta
tttggagacgaatcctctgaggaggactccaagttcagttgggagagtgg
gagtcccacgatgaaattggtgactttttaagaagaggaagagacatgag
gtgacattctttttctgtcttgccatgtgatgtccttggtgtgtgagaca
gagcacaaggcctttgtctactgttgaacagagatgcttgtaccatgctt
tgttacacgcgttctcacgaccggccaggaaagacgctgcaacaggatcc
ttctgcacacatttattcagtcctgtttcttcttgtttatatctcccttg
tttatatctcccttgtttatatacctcccttgtttttatatctcccttgt
ttttatatctcccctgtttttatatctcccccgaaccctgggcctctcac
tccttttatactctctctcatccacgaaccgcaggccacgccccctcacc
aggcatgcagcttcagctaatcagggcagcaggggcaaatctccaccaaa
ttggattcacctgtatcctggtacacctgcgcagcactcaagatgtttgt
gtcttatatgaggaagtcagtgcaagtcatatgactagctgcagtctctg
gcgcctttaggactgccgccacactgctcctaacaattcccccttttttc
ttttttggagagagaatgtctgtttgtgatagccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_34352770_34353835
seq2: B6Ng01-010M13.b_45_1102 (reverse)

seq1  GCCCCT-CACACTTTATCTTCCACAGGAACCCAGCATTGCTGACAATGCA  49
      |||||| | |||||||| || ||||||||||||||| ||||| |||||| 
seq2  GCCCCTCCCCACTTTAT-TTTCACAGGAACCCAGCA-TGCTG-CAATGC-  46

seq1  AGTCAGGCTCCCCCAAGGCTCTTGTCCCCCATAACACAGTTGCTCCTTGG  99
      ||||||   |||||||||||||||| |||||||||||||||||| |||||
seq2  AGTCAGCTCCCCCCAAGGCTCTTGT-CCCCATAACACAGTTGCT-CTTGG  94

seq1  GCACTCTTGGTTTTTATTTTGTTGCTATCTGCAACTGGGGAATTTATAAG  149
      |||||| ||||||||||||||||||||||||||||||||||| |||| ||
seq2  GCACTC-TGGTTTTTATTTTGTTGCTATCTGCAACTGGGGAA-TTAT-AG  141

seq1  AAGTAGAGGTTGACGTGACCCATGATTCTGAACCTGGGGGGTTCAGCACT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAGGTTGACGTGACCCATGATTCTGAACCTGGGGGGTTCAGCACT  191

seq1  GTTCTGGGTATCTGCTCAGTACCTAGCAAGGAAGGCCCTTCCTGTGGATG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGGTATCTGCTCAGTACCTAGCAAGGAAGGCCCTTCCTGTGGATG  241

seq1  CTTGGAAGTGGTGGAGGGCATCACATGGAGATGCAGAGCCAGCAGGTGTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAGTGGTGGAGGGCATCACATGGAGATGCAGAGCCAGCAGGTGTA  291

seq1  ATTCTATAAAGTTACACTCATGTGTACACAGGATAGTCATTTATTCCTCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATAAAGTTACACTCATGTGTACACAGGATAGTCATTTATTCCTCC  341

seq1  GGAAGAACCCACAGTCTTTGGCAAATCCTGAAAAGGTCTCTAGTCCAGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAACCCACAGTCTTTGGCAAATCCTGAAAAGGTCTCTAGTCCAGAA  391

seq1  TGACTTATGTTTAAAAGGCCCTTTAGTTTCTTTCAATTTGGCCAATTTTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTATGTTTAAAAGGCCCTTTAGTTTCTTTCAATTTGGCCAATTTTC  441

seq1  AAAATAAAGTGGGTCAGATTAGAAACTGAAAATAAGTCAAGGATAGACAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAGTGGGTCAGATTAGAAACTGAAAATAAGTCAAGGATAGACAA  491

seq1  TTTAATTGTAAGGTTTCAGACAAATAAACAAATATTTCAATAAGTTATGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTGTAAGGTTTCAGACAAATAAACAAATATTTCAATAAGTTATGC  541

seq1  CAAAAAGATAACAATAGAGTGGAGAGCCATTTCCCTTTTTGTGGAAGGGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGATAACAATAGAGTGGAGAGCCATTTCCCTTTTTGTGGAAGGGG  591

seq1  TGGATGGATAGGAATCATAGAGGTCAGGAAAGGGAGGAGGGGACTAGTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGATAGGAATCATAGAGGTCAGGAAAGGGAGGAGGGGACTAGTGG  641

seq1  CAATGTATGCACGAGGAGAAGGCCAGCATTGCCTAGTAGCAGCCTTTTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTATGCACGAGGAGAAGGCCAGCATTGCCTAGTAGCAGCCTTTTAT  691

seq1  TTCCTAGATGTATGCTTTTGGAAGGCAGGTAGTAGCTTGGGAAGGCTACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGATGTATGCTTTTGGAAGGCAGGTAGTAGCTTGGGAAGGCTACA  741

seq1  TACAAGCTCTACTTAAGCTCACAGGGAAAAATATGTACAGGCCCAGTAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGCTCTACTTAAGCTCACAGGGAAAAATATGTACAGGCCCAGTAGT  791

seq1  ACCATCTTACCACTGAGCCAGACCTGTGGAGATGCTGAGCTAATTAAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTTACCACTGAGCCAGACCTGTGGAGATGCTGAGCTAATTAAAAT  841

seq1  GCTATGGTCTTTCCCAGTACTGGATCTATTTTTAACTTAATTTTGTCACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGGTCTTTCCCAGTACTGGATCTATTTTTAACTTAATTTTGTCACT  891

seq1  AGAGTAGGCAGTTTATATATAATTTTTTAAGAAAATATTTTTCATTCTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGGCAGTTTATATATAATTTTTTAAGAAAATATTTTTCATTCTTA  941

seq1  ATTTTCCATGAATAATTCATCTTAGTGGATAATCCTCCTGCTTACTTCAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCATGAATAATTCATCTTAGTGGATAATCCTCCTGCTTACTTCAA  991

seq1  GGATTTTGTCTAAAGACACATGGGGACATTCCCAGGCAGAGGGACTGGAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTGTCTAAAGACACATGGGGACATTCCCAGGCAGAGGGACTGGAC  1041

seq1  ATAATCCATGTGAATTC  1066
      |||||||||||||||||
seq2  ATAATCCATGTGAATTC  1058

seq1: chr13_34230674_34231663
seq2: B6Ng01-010M13.g_63_1047

seq1  GAATTCCATTACCAGGAATTTGTTCCCATGTAGCACACACACCTGTATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTACCAGGAATTTGTTCCCATGTAGCACACACACCTGTATTC  50

seq1  TGGAAACCTATTTGAACCATGCTGCACCTGAGAGAGAAAACCCAGTGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACCTATTTGAACCATGCTGCACCTGAGAGAGAAAACCCAGTGCCT  100

seq1  ATACTGTCTTTAAAGTATACTGCTCAGACACAGTTTTTATCATGATCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTCTTTAAAGTATACTGCTCAGACACAGTTTTTATCATGATCAGC  150

seq1  AACCCCAGGAAGTAAAGACTGGGAGTTGAGACTTGCTCATAATGCCCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCAGGAAGTAAAGACTGGGAGTTGAGACTTGCTCATAATGCCCACA  200

seq1  AGCTGCTGTGATTCCAGGCTCAGGACCAAGCACAATGCTATTAGGCTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTGTGATTCCAGGCTCAGGACCAAGCACAATGCTATTAGGCTAAA  250

seq1  CATCCTTCCAAGACTCACAGGAAGACTAGATCACAAATAGATGACAATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTCCAAGACTCACAGGAAGACTAGATCACAAATAGATGACAATTA  300

seq1  TTTGGAGACGAATCCTCTGAGGAGGACTCCAAGTTCAGTTGGGAGAGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGACGAATCCTCTGAGGAGGACTCCAAGTTCAGTTGGGAGAGTGG  350

seq1  GAGTCCCACGATGAAATTGGTGACTTTTTAAGAAGAGGAAGAGACATGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCCACGATGAAATTGGTGACTTTTTAAGAAGAGGAAGAGACATGAG  400

seq1  GTGACATTCTTTTTCTGTCTTGCCATGTGATGTCCTTGGTGTGTGAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATTCTTTTTCTGTCTTGCCATGTGATGTCCTTGGTGTGTGAGACA  450

seq1  GAGCACAAGGCCTTTGTCTACTGTTGAACAGAGATGCTTGTACCATGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACAAGGCCTTTGTCTACTGTTGAACAGAGATGCTTGTACCATGCTT  500

seq1  TGTTACACGCGTTCTCACGACCGGCCAGGAAAGACGCTGCAACAGGATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACACGCGTTCTCACGACCGGCCAGGAAAGACGCTGCAACAGGATCC  550

seq1  TTCTGCACACATTTATTCAGTCCTGTTTCTTCTTGTTTATATCTCCCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCACACATTTATTCAGTCCTGTTTCTTCTTGTTTATATCTCCCTTG  600

seq1  TTTATATCTCCCTTGTTTATATACCTCCCTTGTTTTTATATCTCCCTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATCTCCCTTGTTTATATACCTCCCTTGTTTTTATATCTCCCTTGT  650

seq1  TTTTATATCTCCCCTGTTTTTATATCTCCCCCGAACCCTGGGCCTCTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATCTCCCCTGTTTTTATATCTCCCCCGAACCCTGGGCCTCTCAC  700

seq1  TCCTTTTATACTCTCTCTCATCCACGAACCGCAGGCCACGCCCCCTCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTATACTCTCTCTCATCCACGAACCGCAGGCCACGCCCCCTCACC  750

seq1  AGGCATGCAGCTTCAGCTAATCAGGGCAGCAGGGGCAAATCTCCACCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGCAGCTTCAGCTAATCAGGGCAGCAGGGGCAAATCTCCACCAAA  800

seq1  TTGGATTCACCTGTATCCTGGTACACCTGCGCAGCACTCAAGATGTTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATTCACCTGTATCCTGGTACACCTGCGCAGCACTCAAGATGTTTGT  850

seq1  GTCTTATATGAGGAAGTCAGGTGCAAGTCATATGACTTAGCTGCAGTCTC  900
      ||||||||||||||||||| |||||||||||||||| |||||||||||||
seq2  GTCTTATATGAGGAAGTCA-GTGCAAGTCATATGAC-TAGCTGCAGTCTC  898

seq1  TGGCGCCTTTAGGACTGCCGCCACACCTGCTCCTAACAATTCCCCCTTTT  950
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGGCGCCTTTAGGACTGCCGCCACA-CTGCTCCTAACAATTCCCCCTTTT  947

seq1  TTCTTTTTTGGCAGAGAGAATGTCTGTCTGTAGATAGCCC  990
      ||||||||||| ||||||||||||||| ||| ||||||||
seq2  TTCTTTTTTGG-AGAGAGAATGTCTGTTTGT-GATAGCCC  985