BAC Information

Click to search

BAC

Clone NameB6Ng01-011C14
Chromosome13 (Build37)
Map Location 47,895,919 - 48,064,964
singlet/doubletdoublet
Overlap gene4931429P17Rik
Upstream geneKif13a, LOC544928, Nhlrc1, Tpmt, Aof1, Dek, LOC100039761, Ibrdc2
Downstream geneId4, LOC667351, Zfp169, A830005F24Rik, AW456874, Barx1, Phf2, EG667415, BC010304, C030044B11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011C14.bB6Ng01-011C14.g
ACCDH846620DH846621
length1,197818
definitionDH846620|Mus musculus domesticus DNA, BAC clone: B6Ng01-011C14, 5' end.DH846621|Mus musculus domesticus DNA, BAC clone: B6Ng01-011C14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,063,776 - 48,064,964)(47,895,919 - 47,896,732)
sequence
gaattcagaagccggggtgatgtcaggctcagatcaaatagaaataactt
ctaaggtctccacttattaaaaatgtatgtcatgtgttctaggattttcc
tgcacagtgattgcacacaggcaggaggcagcctgaagcttttttttcca
accccacagctctttcccttcttcattaagcaaggaggcaaacaagaggc
tggcaaaggcagacaataggctcaccttctccaaatcttccaggaaaatg
tggagacctttgtggagcttcatcaacagtctccatggggtagccctgct
tgacatggctgtctgtttgtaggtgaggggtaaggcactgacattctgtt
cacacaaacagaagtgcttaaaccaggaagcattcaaagtctgatttcaa
tcgcactctctgtccccaccccagccagagtccctttagtgttcctcgag
tttggcactgtttctagacttcacctttaagaatctttctcttgtcgcac
aagagcctctctcctcttcacaaattcaggcaaaatctgggtcttgtggt
actcacctgtaatcacagcactgcagaggggcaagcagaattgaatcgga
gagttcaaggtcagcccgggttaccataggatcttgtcttaaaaaccaaa
agcaaaagcaaaaggggaaatgaaataatgtgattatgctttaatttcaa
aaaagaaaacaaaactgaaaaataaaacaaacaaaaagtcaaaccaaagt
gattccaacccttccctggtacataccctttccatacagaactcagattt
gtccctttcatacaagaaacaaaactttgttatttttaagccacctctga
acagacagcaagccaaagatcagccaacatctcatagctgatgttgtata
ggaatttgcacatcttagtacctctatcttgttaggcacacattgggtgg
ggggtgttgtatgcaccagctgtacattaacaacaggacaaaaacaggat
ggccgggtctcccttcaactaggttgcagacgatggagaaagaagagtgt
actgaaataggctatccctgcctgtaggtttttagaacaagtgctcatca
aggaggcaggaggctttaatttacggcatggttttaccaggactggaaaa
aatacaggtggtggatggtaactctcttcctgtatttcctcattgca
gaattctgtggagcagtctcttagaaatggctgcataaacaagactggag
caatgacaacatcaaagggacaagttaacctggaagggaggaaatttcac
agcatcccaccaggagacaaagacatacaggaaactatcgattgctggga
gaaggagatttagcctctcccagggattagccccattatgggttgtccaa
ggcagagtggtcagccttgaaacaatgtacacataaataacaaaaataga
ctcagcaaattgtatatatatatatacacaaacataacaaatacatatat
gtaacagatataatcatggaaaaagaggctatcaacttgaaagttcagaa
catggaaggaatttgagagagggtagctgggaggagttatagggaggaaa
tgatgtaattctatttcaataaaaaaacttgtttagaaaaagaaatattg
cattgttggagaagttgttgacagaagactgggactggattgttggacag
agctggacaaaccgcagtaaccaccacagatgtccaaggtagatctccca
acatgcattcttttctgaaaagatggggcaagagaaagggttaatgggag
ccatcagaaatagctacagaagtggttgttccaagattttcccacaattg
cttcctatctaatgaatcaaattagctatttgcatgagcatatcaaatac
gtccttctagttaatttttcatttccaattactatcagacgaaacaatgc
tgatgaataacattgtttcttgatcaaatcttttgctcatgcacagcaaa
acgtatgtttcaaagagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_48063776_48064964
seq2: B6Ng01-011C14.b_47_1243 (reverse)

seq1  TGCAATGAGGGAAATACA-GAAGAGAGTTA-----CATCACACTGTATTT  44
      |||||||| ||||||||| |||||||||||     || ||| ||||||||
seq2  TGCAATGA-GGAAATACAGGAAGAGAGTTACCATCCACCAC-CTGTATTT  48

seq1  TAT-CAGTCTTGGGTAAAACCATGCTGT-AATTTAAGCCTTCTGCCTCCC  92
      | | ||||| | ||||||||||||| || |||| |||||| |||||||| 
seq2  TTTCCAGTCCT-GGTAAAACCATGCCGTAAATTAAAGCCTCCTGCCTCCT  97

seq1  TGATGAGCACTTTGTCTAAAAACCTACAGGCAGGGTATGCCTAGTTTCAG  142
      ||||||||||||  |||||||||||||||||||||   ||||| ||||||
seq2  TGATGAGCACTTGTTCTAAAAACCTACAGGCAGGGATAGCCTA-TTTCAG  146

seq1  TACACTCTTCTTTCT-CATCGTCTGCAACCTAGTTGAAGGGAGACCCGG-  190
      ||||||||||||||| ||||||||||||||||||||||||||||||||| 
seq2  TACACTCTTCTTTCTCCATCGTCTGCAACCTAGTTGAAGGGAGACCCGGC  196

seq1  CATTCTGTTTTTGTCCTGTTGTTAATGTACAGCTGGTGCATACAACA-CC  239
      ||| ||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CATCCTGTTTTTGTCCTGTTGTTAATGTACAGCTGGTGCATACAACACCC  246

seq1  CCCAACCAATGTGTGCCTAACAAGATAGAGGTACTAAGATGTGCAAATTC  289
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCAATGTGTGCCTAACAAGATAGAGGTACTAAGATGTGCAAATTC  296

seq1  CTATACAACATCAGCTATGAGATGTTGGCTGATCTTTGGCTTGCTGTCTG  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACAACATCAGCTATGAGATGTTGGCTGATCTTTGGCTTGCTGTCTG  346

seq1  TTCAGAGGTGGCTTAAAAATAAC-AAGTTTTGTTTCTTGTATGAAAGGGA  388
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTCAGAGGTGGCTTAAAAATAACAAAGTTTTGTTTCTTGTATGAAAGGGA  396

seq1  CAAATCTGAGTTCTGTATGGAAAGGGTATGTACCAGGGAAGGGTTGGAAT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTGAGTTCTGTATGGAAAGGGTATGTACCAGGGAAGGGTTGGAAT  446

seq1  CACTTTGGTTTGACTTTTTGTTTGTTTTATTTTTCAGTTTTGTTTTCTTT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGGTTTGACTTTTTGTTTGTTTTATTTTTCAGTTTTGTTTTCTTT  496

seq1  TTTGAAATTAAAGCATAATCACATTATTTCATTTCCCCTTTTGCTTTTGC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAATTAAAGCATAATCACATTATTTCATTTCCCCTTTTGCTTTTGC  546

seq1  TTTTGGTTTTTAAGACAAGATCCTATGGTAACCCGGGCTGACCTTGAACT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTTTTTAAGACAAGATCCTATGGTAACCCGGGCTGACCTTGAACT  596

seq1  CTCCGATTCAATTCTGCTTGCCCCTCTGCAGTGCTGTGATTACAGGTGAG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGATTCAATTCTGCTTGCCCCTCTGCAGTGCTGTGATTACAGGTGAG  646

seq1  TACCACAAGACCCAGATTTTGCCTGAATTTGTGAAGAGGAGAGAGGCTCT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACAAGACCCAGATTTTGCCTGAATTTGTGAAGAGGAGAGAGGCTCT  696

seq1  TGTGCGACAAGAGAAAGATTCTTAAAGGTGAAGTCTAGAAACAGTGCCAA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCGACAAGAGAAAGATTCTTAAAGGTGAAGTCTAGAAACAGTGCCAA  746

seq1  ACTCGAGGAACACTAAAGGGACTCTGGCTGGGGTGGGGACAGAGAGTGCG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGAGGAACACTAAAGGGACTCTGGCTGGGGTGGGGACAGAGAGTGCG  796

seq1  ATTGAAATCAGACTTTGAATGCTTCCTGGTTTAAGCACTTCTGTTTGTGT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAATCAGACTTTGAATGCTTCCTGGTTTAAGCACTTCTGTTTGTGT  846

seq1  GAACAGAATGTCAGTGCCTTACCCCTCACCTACAAACAGACAGCCATGTC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAATGTCAGTGCCTTACCCCTCACCTACAAACAGACAGCCATGTC  896

seq1  AAGCAGGGCTACCCCATGGAGACTGTTGATGAAGCTCCACAAAGGTCTCC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGGCTACCCCATGGAGACTGTTGATGAAGCTCCACAAAGGTCTCC  946

seq1  ACATTTTCCTGGAAGATTTGGAGAAGGTGAGCCTATTGTCTGCCTTTGCC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTCCTGGAAGATTTGGAGAAGGTGAGCCTATTGTCTGCCTTTGCC  996

seq1  AGCCTCTTGTTTGCCTCCTTGCTTAATGAAGAAGGGAAAGAGCTGTGGGG  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTTGTTTGCCTCCTTGCTTAATGAAGAAGGGAAAGAGCTGTGGGG  1046

seq1  TTGGAAAAAAAAGCTTCAGGCTGCCTCCTGCCTGTGTGCAATCACTGTGC  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAAAAAAGCTTCAGGCTGCCTCCTGCCTGTGTGCAATCACTGTGC  1096

seq1  AGGAAAATCCTAGAACACATGACATACATTTTTAATAAGTGGAGACCTTA  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATCCTAGAACACATGACATACATTTTTAATAAGTGGAGACCTTA  1146

seq1  GAAGTTATTTCTATTTGATCTGAGCCTGACATCACCCCGGCTTCTGAATT  1188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTATTTCTATTTGATCTGAGCCTGACATCACCCCGGCTTCTGAATT  1196

seq1  C  1189
      |
seq2  C  1197

seq1: chr13_47895919_47896732
seq2: B6Ng01-011C14.g_68_885

seq1  GAATTCTGTGGAGCAGTCTCTTAGAAATGGCTGCATAAACAAGACTGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGGAGCAGTCTCTTAGAAATGGCTGCATAAACAAGACTGGAG  50

seq1  CAATGACAACATCAAAGGGACAAGTTAACCTGGAAGGGAGGAAATTTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGACAACATCAAAGGGACAAGTTAACCTGGAAGGGAGGAAATTTCAC  100

seq1  AGCATCCCACCAGGAGACAAAGACATACAGGAAACTATCGATTGCTGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCCACCAGGAGACAAAGACATACAGGAAACTATCGATTGCTGGGA  150

seq1  GAAGGAGATTTAGCCTCTCCCAGGGATTAGCCCCATTATGGGTTGTCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGATTTAGCCTCTCCCAGGGATTAGCCCCATTATGGGTTGTCCAA  200

seq1  GGCAGAGTGGTCAGCCTTGAAACAATGTACACATAAATAACAAAAATAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGTGGTCAGCCTTGAAACAATGTACACATAAATAACAAAAATAGA  250

seq1  CTCAGCAAATTGTATATATATATATACACAAACATAACAAATACATATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAAATTGTATATATATATATACACAAACATAACAAATACATATAT  300

seq1  GTAACAGATATAATCATGGAAAAAGAGGCTATCAACTTGAAAGTTCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAGATATAATCATGGAAAAAGAGGCTATCAACTTGAAAGTTCAGAA  350

seq1  CATGGAAGGAATTTGAGAGAGGGTAGCTGGGAGGAGTTATAGGGAGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAAGGAATTTGAGAGAGGGTAGCTGGGAGGAGTTATAGGGAGGAAA  400

seq1  TGATGTAATTCTATTTCAATAAAAAAACTTGTTTAGAAAAAGAAATATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTAATTCTATTTCAATAAAAAAACTTGTTTAGAAAAAGAAATATTG  450

seq1  CATTGTTGGAGAAGTTGTTGACAGAAGACTGGGACTGGATTGTTGGACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTGGAGAAGTTGTTGACAGAAGACTGGGACTGGATTGTTGGACAG  500

seq1  AGCTGGACAAACCGCAGTAACCACCACAGATGTCCAAGGTAGATCTCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGACAAACCGCAGTAACCACCACAGATGTCCAAGGTAGATCTCCCA  550

seq1  ACATGCATTCTTTTCTGAAAAGATGGGGCAAGAGAAAGGGTTAATGGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCATTCTTTTCTGAAAAGATGGGGCAAGAGAAAGGGTTAATGGGAG  600

seq1  CCATCAGAAATAGCTACAGAAGTGGTTGTTCCAAGATTTTCCCACAATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGAAATAGCTACAGAAGTGGTTGTTCCAAGATTTTCCCACAATTG  650

seq1  CTTCCTATCTAATGAATCAAATTAGCTA-TTGCATGAGCATATCAAATAC  699
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTTCCTATCTAATGAATCAAATTAGCTATTTGCATGAGCATATCAAATAC  700

seq1  GT-CTTCTAGTTAATTTTTCATTTCTAATTACTATCAGATGAAACAATGC  748
      || |||||||||||||||||||||| ||||||||||||| ||||||||||
seq2  GTCCTTCTAGTTAATTTTTCATTTCCAATTACTATCAGACGAAACAATGC  750

seq1  TGATGAA-AACATTGTTTC-TGACCAAATC-TTTGCTCATGCACAGCAAA  795
      ||||||| ||||||||||| ||| |||||| |||||||||||||||| ||
seq2  TGATGAATAACATTGTTTCTTGATCAAATCTTTTGCTCATGCACAGC-AA  799

seq1  AACGTAATGTTCAAAGAGG  814
      ||||||   ||||||||||
seq2  AACGTATGTTTCAAAGAGG  818