BAC Information

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BAC

Clone NameB6Ng01-011I20
Chromosome13 (Build37)
Map Location 38,311,714 - 38,447,687
singlet/doubletdoublet
Overlap gene6530403A03Rik, Bmp6
Upstream geneLy86, LOC100042794, LOC100042800, LOC100042802, LOC100041624, Rreb1, Ssr1, Cage1, Riok1, Dsp
Downstream geneTxndc5, Muted, Eef1e1, LOC621102, Slc35b3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011I20.bB6Ng01-011I20.g
ACCDH846905DH846906
length1,056463
definitionDH846905|Mus musculus domesticus DNA, BAC clone: B6Ng01-011I20, 5' end.DH846906|Mus musculus domesticus DNA, BAC clone: B6Ng01-011I20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,311,714 - 38,312,772)(38,447,219 - 38,447,687)
sequence
gaattctcgatttcctttaggactggcattgtagggaagagccacccagc
agctgtttctcctctctgtacatattttactctctatttcatatttttcc
ttgaattgttcaagactagttatccccaaaaagtatgtatgtgtttccag
agaataaagctgttttcttatgtagtcgtggcatagttccaacttgaaag
ttaacattgaaataatattgccatctaccatttctttattcatcagtgtg
acaggtgccctttttatagttcttaagtgtatgcatctcatagtccatta
tgtcatagcccttccttaggaaaatgttgagtgtgacaagcagtgatttt
tctaatagactttatttttaattacatgtatatgtgtgggtatgtgcaca
tgagtgcgggtaccagaggaaggtgccaggagaccaggagaagaccttag
atccccaatcttagagttctaaatgatggtgaaccacccaacacggatgc
tggaaaccaaactcagtccgatgggagagcaacagatgctcttaaccact
gagccgtctctccagctcctatttttctggttttatgatcttaagtttta
caacacccttttttaaaattttgatttatttatttattttatgtatatga
gtacattgtagttgtcttcagacaccagaagagggcatcagatcacattg
cagatggccgtgagccaccatgtggttgttggaatttgaactcaggacct
ttggaagagtagtcagtgctcttacctgctgagccgactctccagccctt
agaacaatttcctgatgtgacattggtttttccttcttccaaggtgatcc
gggatgtgatcaaggtgcacatggaggagctgagcagccactggcaggaa
gagcagggagagcagagacgctgctgagaagtacgccagtgtctttatgg
gagaaatgtttgcttatttcatttttgtgcttatgtcaacccgtgcacgt
tggtagtgtgctctcgtgtgctgtaactggggaacagcatcactgggttg
cttagg
cttgactctaacgatacagccatgacccccaagtacttccttattttggg
aggtcgcctctatgcaggtgtaagagaaaatgggaagtgaggggtaggta
attggctataatttcatgagaaaatatccctgcctataatgagtactcat
aaaagaacactcaaactcctaacacacctcagacaaactactatgaattc
aataccattctttagggttcccatgttccttagtcacagtacactggata
gcccttccttggagaaaaacaaaaacaaaaaaccctactcaatgtattat
tcccaaagccctcaggatttatggagtctcaattagatttactacagtct
aagtagtttctcctaaggtaggctgagatcgcccctcaatgtccagtatg
gtttggtttggtttggttttgttctgttttgttttgtttttttttttttt
tttgggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_38311714_38312772
seq2: B6Ng01-011I20.b_42_1097

seq1  GAATTCTCGATTTCCTTTAGGACTGGCATTGTAGGGAAGAGCCACCCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCGATTTCCTTTAGGACTGGCATTGTAGGGAAGAGCCACCCAGC  50

seq1  AGCTGTTTCTCCTCTCTGTACATATTTTACTCTCTATTTCATATTTTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTTCTCCTCTCTGTACATATTTTACTCTCTATTTCATATTTTTCC  100

seq1  TTGAATTGTTCAAGACTAGTTATCCCCAAAAAGTATGTATGTGTTTCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTGTTCAAGACTAGTTATCCCCAAAAAGTATGTATGTGTTTCCAG  150

seq1  AGAATAAAGCTGTTTTCTTATGTAGTCGTGGCATAGTTCCAACTTGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAAGCTGTTTTCTTATGTAGTCGTGGCATAGTTCCAACTTGAAAG  200

seq1  TTAACATTGAAATAATATTGCCATCTACCATTTCTTTATTCATCAGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATTGAAATAATATTGCCATCTACCATTTCTTTATTCATCAGTGTG  250

seq1  ACAGGTGCCCTTTTTATAGTTCTTAAGTGTATGCATCTCATAGTCCATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTGCCCTTTTTATAGTTCTTAAGTGTATGCATCTCATAGTCCATTA  300

seq1  TGTCATAGCCCTTCCTTAGGAAAATGTTGAGTGTGACAAGCAGTGATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATAGCCCTTCCTTAGGAAAATGTTGAGTGTGACAAGCAGTGATTTT  350

seq1  TCTAATAGACTTTATTTTTAATTACATGTATATGTGTGGGTATGTGCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATAGACTTTATTTTTAATTACATGTATATGTGTGGGTATGTGCACA  400

seq1  TGAGTGCGGGTACCAGAGGAAGGTGCCAGGAGACCAGGAGAAGACCTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGCGGGTACCAGAGGAAGGTGCCAGGAGACCAGGAGAAGACCTTAG  450

seq1  ATCCCCAATCTTAGAGTTCTAAATGATGGTGAACCACCCAACACGGATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCAATCTTAGAGTTCTAAATGATGGTGAACCACCCAACACGGATGC  500

seq1  TGGAAACCAAACTCAGTCCGATGGGAGAGCAACAGATGCTCTTAACCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACCAAACTCAGTCCGATGGGAGAGCAACAGATGCTCTTAACCACT  550

seq1  GAGCCGTCTCTCCAGCTCCTATTTTTCTGGTTTTATGATCTTAAGTTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCGTCTCTCCAGCTCCTATTTTTCTGGTTTTATGATCTTAAGTTTTA  600

seq1  CAACACCCTTTTTTAAAATTTTGATTTATTTATTTATTTTATGTATATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACCCTTTTTTAAAATTTTGATTTATTTATTTATTTTATGTATATGA  650

seq1  GTACATTGTAGTTGTCTTCAGACACCAGAAGAGGGCATCAGATCACATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATTGTAGTTGTCTTCAGACACCAGAAGAGGGCATCAGATCACATTG  700

seq1  CAGATGGCCGTGAGCCACCATGTGGTTGTTGGAATTTGAACTCAGGACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGCCGTGAGCCACCATGTGGTTGTTGGAATTTGAACTCAGGACCT  750

seq1  TTGGAAGAGTAGTCAGTGCTCTTACCTGCTGAGCCGACTCTCCAGCCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGAGTAGTCAGTGCTCTTACCTGCTGAGCCGACTCTCCAGCCCTT  800

seq1  AGAACAATTTCCTGATGTGACATTGGTTTTTCCTTCTTCCAAGGTGATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAATTTCCTGATGTGACATTGGTTTTTCCTTCTTCCAAGGTGATCC  850

seq1  GGGATGTGATCAAGGTGCACATGGAGGAGCTGAGCAGCCACTGGCAGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGTGATCAAGGTGCACATGGAGGAGCTGAGCAGCCACTGGCAGGAA  900

seq1  GAGCAGGGGAGAGCAGGAGACGCTGCTGAGAAGTACGCCAGTGTCTTTAT  950
      ||||| ||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAGCA-GGGAGAGCA-GAGACGCTGCTGAGAAGTACGCCAGTGTCTTTAT  948

seq1  GGAGGAAATGTTTGCTTATTCCA-TTTTGTGCTTATGTCAAACCCGTGCA  999
      ||  |||||||||||||||| || ||||||||||||||| ||||||||||
seq2  GGGAGAAATGTTTGCTTATTTCATTTTTGTGCTTATGTC-AACCCGTGCA  997

seq1  CGTTGGTAGTGTGCCTCTCGTGTGCTGTAACTGGGGACATGCATCACTGT  1049
      ||||||||||||| |||||||||||||||||||||||   ||||||||| 
seq2  CGTTGGTAGTGTG-CTCTCGTGTGCTGTAACTGGGGAACAGCATCACTGG  1046

seq1  GTGGCTTAGG  1059
      || |||||||
seq2  GTTGCTTAGG  1056

seq1: chr13_38447219_38447687
seq2: B6Ng01-011I20.g_69_537 (reverse)

seq1  CCCCCCCCCCAAAAAAAAAAAAAAAAACAAAACAAAACAGAACAAAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCAAAAAAAAAAAAAAAAACAAAACAAAACAGAACAAAACCA  50

seq1  AACCAAACCAAACCATACTGGACATTGAGGGGCGATCTCAGCCTACCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAACCAAACCATACTGGACATTGAGGGGCGATCTCAGCCTACCTTA  100

seq1  GGAGAAACTACTTAGACTGTAGTAAATCTAATTGAGACTCCATAAATCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAACTACTTAGACTGTAGTAAATCTAATTGAGACTCCATAAATCCT  150

seq1  GAGGGCTTTGGGAATAATACATTGAGTAGGGTTTTTTGTTTTTGTTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCTTTGGGAATAATACATTGAGTAGGGTTTTTTGTTTTTGTTTTTC  200

seq1  TCCAAGGAAGGGCTATCCAGTGTACTGTGACTAAGGAACATGGGAACCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGAAGGGCTATCCAGTGTACTGTGACTAAGGAACATGGGAACCCT  250

seq1  AAAGAATGGTATTGAATTCATAGTAGTTTGTCTGAGGTGTGTTAGGAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATGGTATTGAATTCATAGTAGTTTGTCTGAGGTGTGTTAGGAGTT  300

seq1  TGAGTGTTCTTTTATGAGTACTCATTATAGGCAGGGATATTTTCTCATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTTCTTTTATGAGTACTCATTATAGGCAGGGATATTTTCTCATGA  350

seq1  AATTATAGCCAATTACCTACCCCTCACTTCCCATTTTCTCTTACACCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAGCCAATTACCTACCCCTCACTTCCCATTTTCTCTTACACCTGC  400

seq1  ATAGAGGCGACCTCCCAAAATAAGGAAGTACTTGGGGGTCATGGCTGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGGCGACCTCCCAAAATAAGGAAGTACTTGGGGGTCATGGCTGTAT  450

seq1  CGTTAGAGTCAAGGAATTC  469
      |||||||||||||||||||
seq2  CGTTAGAGTCAAGGAATTC  469