BAC Information

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BAC

Clone NameB6Ng01-012A24
Chromosome13 (Build37)
Map Location 26,013,427 - 26,014,566
singlet/doubletsinglet
Overlap genenone
Upstream geneAldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1, Tpi-rs8, LOC214973
Downstream geneLOC666221, LOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012A24.bB6Ng01-012A24.g
ACCDH847256DH847257
length1,1461,175
definitionDH847256|Mus musculus domesticus DNA, BAC clone: B6Ng01-012A24, 5' end.DH847257|Mus musculus domesticus DNA, BAC clone: B6Ng01-012A24, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatttcatatgaacccaatagtttgaagcaatgttcatttcttta
actcaggtttttaagtcaataagatggtggtcatatccttctgcaaagaa
ggaagtagaaccatccaacatctctgatttcatataatctccttgctgcc
tggatcatctctggatgggagagggaagcctggttttcttcaatatttcc
ccggagcctgacagactagttcctggcactcagtctgtcagcctcgattt
atgtatcaaccaatatcactttgttccaagaaaatgattaaattgcctaa
gtcataatttcatctgggtttaacgatttaaactatgctgtcactcgtgc
ccttgtcattcagataatttcacagccatcgaatgttatgtagtgccata
ttttctgttttaaaatcaagtactgtgacgttgtctctgccctctaggag
cttataatcttaacagtttttcttccagaaagcttgcaaatccctatgcg
ttttgaattttgctttagtctttccccaaagtcctatcccccaaaatttt
atctttaattggaataacaagatgtagtaccggtgtgtgtaatgtgtgcc
tctgtgtgtacacatgtgtgcacatacgagtacacaggtatgtgtatatg
tatgtatatatgtccatgagaacatgcatctgccctatcagtaagtgtgc
atataatctttttagttttggctagtagggctttgatagtctatgcactt
ggcttgttcgaccatgaagagatggtagtaacagttttacaatactctat
tgataatttgaactaaactcaatgctttgtccagcacatcagtcttaatc
atagagaagctgagagtgcagaaaatacctgtctcttcttgttcacacac
taggtggaaatcagcttactccagtagcttccatgtggatggtagccagt
ctcttcttccctgtcatggagatatagacctcaagtcactaataatttta
aacagaagcaagctagaaggatttttattttttatcctcagtgtcttttt
ccaaatgcaggaatctttctgaatgcaccacattatggatacctgtagta
cctgtcttttctttctaaacaagtcaccttctatgcaggcttgggg
gaattcagtaagaaagttatttattcagtaacattcaaatttacttccaa
tagagaaggtgaaactaattaggcattacaaagatggagctgggggtagg
gggaatagctcagggctggtctgcagagtgtttacttgagacaatagcca
gtcttacccagacaaggaaattcacaatggcctagtgaataggtggattt
accatgaaagagttagggaacccccctgagacaggtttcttcactaggcc
caaagaaacagcataaatcaggcatttactaagaacccctggtggtgggc
ttaacaatagactagcattacgcctggctcccttcttagtggcagctgcc
tggtccccaccttcttttgatgtatacattccttttttattgtgtcactg
taactaggcagatgtatctcacctggtttcttgttgctcctctgtataaa
aagtaggatctcgatttgaaaaattacattcagattctacacaatctctc
atgtgattctgtctgtcattcattttgctgactccttgtctacctgcaac
cagagacccattctatgcagacagggaccaaaagggtctgcggcacacat
gtagatgaacatgcaagaattcacattgggagaggggaattaagagcaaa
atgggattgtgatttccttttattaaaactttccctcagagaaaaatgtc
tcctgaggtaagaccatcatctttcccttcacaagggagtcatgaaccag
ttatgtgatccccgtccaggagggtgtaaagattctactgcctcctgaat
tattgcactggagaccaagattctagagtgcaaaactttaagatcgtaac
catattcaaacactagtactgatcatcctttcatctcaaacttgatatat
atgcaaatgtttcagtccatcctactatgggttaagtggtggtccacaaa
tttaacaaactgaaagaaacatcattaaatttatactatattagtcggtt
ttaaaatctgaatatgagagtacactattcgactagaaaagctgtgatta
tctaggtatgctttgacccaatttttaaactactcatggtggaaatgtac
tagcaataagattaattatggaatatcatactagatgcactctggtacaa
tcagagaaatgtactgtttgagagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_26013427_26014566
seq2: B6Ng01-012A24.b_40_1185

seq1  GAATTCATTTCATATGAACCCAATAGTTTGAAGCAATGTTCATTTCTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCATATGAACCCAATAGTTTGAAGCAATGTTCATTTCTTTA  50

seq1  ACTCAGGTTTTTAAGTCAATAAGATGGTGGTCATATCCTTCTGCAAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGTTTTTAAGTCAATAAGATGGTGGTCATATCCTTCTGCAAAGAA  100

seq1  GGAAGTAGAACCATCCAACATCTCTGATTTCATATAATCTCCTTGCTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTAGAACCATCCAACATCTCTGATTTCATATAATCTCCTTGCTGCC  150

seq1  TGGATCATCTCTGGATGGGAGAGGGAAGCCTGGTTTTCTTCAATATTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCATCTCTGGATGGGAGAGGGAAGCCTGGTTTTCTTCAATATTTCC  200

seq1  CCGGAGCCTGACAGACTAGTTCCTGGCACTCAGTCTGTCAGCCTCGATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAGCCTGACAGACTAGTTCCTGGCACTCAGTCTGTCAGCCTCGATTT  250

seq1  ATGTATCAACCAATATCACTTTGTTCCAAGAAAATGATTAAATTGCCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCAACCAATATCACTTTGTTCCAAGAAAATGATTAAATTGCCTAA  300

seq1  GTCATAATTTCATCTGGGTTTAACGATTTAAACTATGCTGTCACTCGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAATTTCATCTGGGTTTAACGATTTAAACTATGCTGTCACTCGTGC  350

seq1  CCTTGTCATTCAGATAATTTCACAGCCATCGAATGTTATGTAGTGCCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCATTCAGATAATTTCACAGCCATCGAATGTTATGTAGTGCCATA  400

seq1  TTTTCTGTTTTAAAATCAAGTACTGTGACGTTGTCTCTGCCCTCTAGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGTTTTAAAATCAAGTACTGTGACGTTGTCTCTGCCCTCTAGGAG  450

seq1  CTTATAATCTTAACAGTTTTTCTTCCAGAAAGCTTGCAAATCCCTATGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAATCTTAACAGTTTTTCTTCCAGAAAGCTTGCAAATCCCTATGCG  500

seq1  TTTTGAATTTTGCTTTAGTCTTTCCCCAAAGTCCTATCCCCCAAAATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAATTTTGCTTTAGTCTTTCCCCAAAGTCCTATCCCCCAAAATTTT  550

seq1  ATCTTTAATTGGAATAACAAGATGTAGTACCGGTGTGTGTAATGTGTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAATTGGAATAACAAGATGTAGTACCGGTGTGTGTAATGTGTGCC  600

seq1  TCTGTGTGTACACATGTGTGCACATACGAGTACACAGGTATGTGTATATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGTACACATGTGTGCACATACGAGTACACAGGTATGTGTATATG  650

seq1  TATGTATATATGTCCATGAGAACATGCATCTGCCCTATCAGTAAGTGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATATATGTCCATGAGAACATGCATCTGCCCTATCAGTAAGTGTGC  700

seq1  ATATAATCTTTTTAGTTTTGGCTAGTAGGGCTTTGATAGTCTATGCACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATCTTTTTAGTTTTGGCTAGTAGGGCTTTGATAGTCTATGCACTT  750

seq1  GGCTTGTTCGACCATGAAGAGATGGTAGTAACAGTTTTACAATACTCTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTTCGACCATGAAGAGATGGTAGTAACAGTTTTACAATACTCTAT  800

seq1  TGATAATTTGAACTAAACTCAATGCTTTGTCCAGCACATCAGTCTTAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATTTGAACTAAACTCAATGCTTTGTCCAGCACATCAGTCTTAATC  850

seq1  ATAGAGAAGCTGAGAGTGCAGAAAATACCTGTCTCTTCTTGTTCACACAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAAGCTGAGAGTGCAGAAAATACCTGTCTCTTCTTGTTCACACAC  900

seq1  TAGGTGGAAATCAGCTTACTCCAGTAGCTTCCATGTGGATGGTAGCCAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGGAAATCAGCTTACTCCAGTAGCTTCCATGTGGATGGTAGCCAGT  950

seq1  CTCTTCTTCCCTGTCATGGAGATATAGACCTCAAGTCACTAATAATTTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTTCCCTGTCATGGAGATATAGACCTCAAGTCACTAATAATTTTA  1000

seq1  AACAGAAGCAAGCTAGAAGGATTTTTA-TTTTTAT-CTCAGTGTCTTTT-  1047
      ||||||||||||||||||||||||||| ||||||| ||||||||||||| 
seq2  AACAGAAGCAAGCTAGAAGGATTTTTATTTTTTATCCTCAGTGTCTTTTT  1050

seq1  -CAAATGCAGGAATC-TTCTGAATGCA-CACATTATGGATAACTGTAGTA  1094
       |||||||||||||| ||||||||||| ||||||||||||| ||||||||
seq2  CCAAATGCAGGAATCTTTCTGAATGCACCACATTATGGATACCTGTAGTA  1100

seq1  CCTGTCTTTCTTTTCTAAACAAGTCACCTTC-ATGCAGGTCTTGGGG  1140
      |||||||||  |||||||||||||||||||| ||||||| |||||||
seq2  CCTGTCTTTTCTTTCTAAACAAGTCACCTTCTATGCAGG-CTTGGGG  1146