BAC Information

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BAC

Clone NameB6Ng01-013G21
Chromosome13 (Build37)
Map Location 96,252,753 - 96,430,080
singlet/doubletdoublet
Overlap geneF2rl1, F2r, Iqgap2
Upstream geneAp3b1, Tbca, Otp, Wdr41, Pde8b, Zbed3, Aggf1, Crhbp, S100z
Downstream geneF2rl2, Sv2c, LOC667582, 1200014M14Rik, 9330128J19Rik, Polk, Col4a3bp, Hmgcr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013G21.bB6Ng01-013G21.g
ACCDH848245DH848246
length1,1421,064
definitionDH848245|Mus musculus domesticus DNA, BAC clone: B6Ng01-013G21, 5' end.DH848246|Mus musculus domesticus DNA, BAC clone: B6Ng01-013G21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,252,753 - 96,253,901)(96,428,997 - 96,430,080)
sequence
gaattctcttttgagtaccatgcttgaaagtgaaccaaacaagggaaaga
aggggctggagagatgagtgctggctgctcagtcctcaggaagggagctg
ggcttccagtacctaaccaagtgagtatccccacacatctgtgactccag
atctcaggtgtctaacaccctcctctgactcccgtgcttaaaggtagaca
cacacaccacaaacatacacacacacacacacacacacacacacatatac
atacatatacacaaacacacaccacaagcatatacacacagatacacaca
caccacaaacacatacacacatacatacaaacccacatacacacctcaca
aaatcttgtcagcatgagaaaaagctaacaaagtattgaattattctacc
taaggaagagaactggctttaagggcattgagcgtatggaggattagtac
tagaaaggctggtcactgctggccactgctggtcactgctgaccactgtt
tgtcactgctggtcactgctggccattgctggtcactactctgttgtcac
tggcacgatcagataaagaataacttttaaaatattaacagaagggctgg
agagatagcgcgacagtcaagagcactggctgctcttgcagaggaccaaa
gcttgggtcctagcactgacacggtgcctcatgctgtctataactcgagt
tccaggctcattcttctggtctccagggcagcaggcacacatggactcat
acagggcaaaaacattcctacacataaaataaaaacaaataaatctctaa
acattgatatacacacatttttaaaaataaaaatttccccaagcattgca
aacgttgctagaaagtgtctaaaaattacctggtctcttatacaaatgcc
taacaaataaaacacaaaagcctattaactggcctagtgtacccattggc
ctgcagggagtgaacagccttgatctgggaccccgaccagtcccactggc
tggtagaaacaagcacacacgtgtaaacaggcaagtggcagtcaccttgc
atatccgagcctagctcgtgtcgtggttcagacagcttacaccaaccaaa
gcacgcccctccctttggccgaatgtctgaaacaaggctcag
gaattcaggtgagaaggtccattcttataaagaacgtgggaggacagaca
agaatgatagtctgtccgcagaaccgagcccactgaggaaggcagatgcc
ccacgaggctgtatccccagcaactgccctggataatgaaggaaaggaac
agacaagatgttcccagccaggcctgttgttcccacctcaccccctccat
cccgctacactgagtccttcctgctttaggatctgtgcttctgataaaac
attctccctaatgtgggacacactcatagtatttagaataagacactcaa
aataactgagttttgttttgttgaacttaaggtagctttactcccccccc
ccatcgttttccaactgggaagaatttgctttctctgcaacaatggtagg
aaatgatgtgattcctttgggaaggctggggatccccagcatttgtattt
ataggtgatcctgtgtgaatacgcctgccccgtcctgaagcccttctcca
ttacgcacataggagttaattctattgcctctgtttcgctctcctaatcc
tgtcactaatgattccatgagaacagagaaaggagagagccactgctgac
ggtcacttatgcatctggacgctctgaacagatacttccatcttggcttg
tgtttgctttcttatctgcagcagcttatagaacttatgtgacatcactg
tgacctctgtcctcctcactttgaacagggacttcccattcctctgggat
cacagtttatcttctgattcccatccctgagtggcgtctataccgtttat
gagaaggatgctcaatcctctcccagtggggacgagaaggatgcctcgaa
tcctctcctagtggggacgtttccatttcttcagagccaattttagttct
ctcactaagagaaacaattgttgcaagtggtcctcacaggcctcaatgct
ctagctcctttcttctcggtttgttgagacagacctctctatgtagctgg
ctaggccagattacgctgtagatcatgctgatctcgatcataggtctgct
gcctctgtcccgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_96252753_96253901
seq2: B6Ng01-013G21.b_49_1190

seq1  GAATTCTCTTTTGAGTACCATGCTTGAAAGTGAACCAAACAAGGGAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTTGAGTACCATGCTTGAAAGTGAACCAAACAAGGGAAAGA  50

seq1  AGGGGCTGGAGAGATGAGTGCTGGCTGCTCAGTCCTCAGGAAGGGAGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTGGAGAGATGAGTGCTGGCTGCTCAGTCCTCAGGAAGGGAGCTG  100

seq1  GGCTTCCAGTACCTAACCAAGTGAGTATCCCCACACATCTGTGACTCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCAGTACCTAACCAAGTGAGTATCCCCACACATCTGTGACTCCAG  150

seq1  ATCTCAGGTGTCTAACACCCTCCTCTGACTCCCGTGCTTAAAGGTAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGGTGTCTAACACCCTCCTCTGACTCCCGTGCTTAAAGGTAGACA  200

seq1  CACACACCACAAACATACACACACACACACACACACACACACACATATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACCACAAACATACACACACACACACACACACACACACACATATAC  250

seq1  ATACATATACACAAACACACACCACAAGCATATACACACAGATACACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATACACAAACACACACCACAAGCATATACACACAGATACACACA  300

seq1  CACCACAAACACATACACACATACATACAAACCCACATACACACCTCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACAAACACATACACACATACATACAAACCCACATACACACCTCACA  350

seq1  AAATCTTGTCAGCATGAGAAAAAGCTAACAAAGTATTGAATTATTCTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTGTCAGCATGAGAAAAAGCTAACAAAGTATTGAATTATTCTACC  400

seq1  TAAGGAAGAGAACTGGCTTTAAGGGCATTGAGCGTATGGAGGATTAGTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAGAGAACTGGCTTTAAGGGCATTGAGCGTATGGAGGATTAGTAC  450

seq1  TAGAAAGGCTGGTCACTGCTGGCCACTGCTGGTCACTGCTGACCACTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGGCTGGTCACTGCTGGCCACTGCTGGTCACTGCTGACCACTGTT  500

seq1  TGTCACTGCTGGTCACTGCTGGCCATTGCTGGTCACTACTCTGTTGTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTGCTGGTCACTGCTGGCCATTGCTGGTCACTACTCTGTTGTCAC  550

seq1  TGGCACGATCAGATAAAGAATAACTTTTAAAATATTAACAGAAGGGCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACGATCAGATAAAGAATAACTTTTAAAATATTAACAGAAGGGCTGG  600

seq1  AGAGATAGCGCGACAGTCAAGAGCACTGGCTGCTCTTGCAGAGGACC-AA  649
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGAGATAGCGCGACAGTCAAGAGCACTGGCTGCTCTTGCAGAGGACCAAA  650

seq1  GCTTGGGTCCTAGCACTGACACGGTGCCTCATGCTGTCTATAACTCGAGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGTCCTAGCACTGACACGGTGCCTCATGCTGTCTATAACTCGAGT  700

seq1  TCCAGGCTCATTCTTCTGGTCTCCAAGGGCAGCAGGCACACATGGACTCA  749
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCCAGGCTCATTCTTCTGGTCTCC-AGGGCAGCAGGCACACATGGACTCA  749

seq1  TACA-GGCAAAAACATTCCTACACATAAAATAAAAACAAATAAATCTCTA  798
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGGCAAAAACATTCCTACACATAAAATAAAAACAAATAAATCTCTA  799

seq1  AACATTGATATACACACATTTTTAAAAATTAAAATTTCCCCAAGCATTGC  848
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AACATTGATATACACACATTTTTAAAAATAAAAATTTCCCCAAGCATTGC  849

seq1  AAACGTGGCTAGAAAGTGTCTAAAAAATTACCTGGTCTCTTATACAAATG  898
      |||||| |||||||||||||| ||||||||||||||||||||||||||||
seq2  AAACGTTGCTAGAAAGTGTCT-AAAAATTACCTGGTCTCTTATACAAATG  898

seq1  CCTAACAAATAAAACACAAAAGCCTATTAACTGGCCTAGTGTACCCATTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACAAATAAAACACAAAAGCCTATTAACTGGCCTAGTGTACCCATTG  948

seq1  G-CTGCAGGGAGTGAACAAGCCTTGATCT-GGACCCCGACCAGTCACACT  996
      | ||||||||||||||| ||||||||||| ||||||||||||||| ||||
seq2  GCCTGCAGGGAGTGAAC-AGCCTTGATCTGGGACCCCGACCAGTCCCACT  997

seq1  GGCTGTGTAGAAACAAGCACACAACGTGTAGACAGGCAAGTGGCAGTCAC  1046
      ||||| |||||||||||||||| ||||||| |||||||||||||||||||
seq2  GGCTG-GTAGAAACAAGCACAC-ACGTGTAAACAGGCAAGTGGCAGTCAC  1045

seq1  CCGTGCCATATCCGAGCCTCAGCTCGTGTCCGTTGTCAGGACTAGCTACC  1096
      |  |  ||||||||||||| ||||||||| ||| ||   ||| ||||  |
seq2  C--TTGCATATCCGAGCCT-AGCTCGTGT-CGTGGTTCAGAC-AGCTTAC  1090

seq1  ACCAACTAAAAGCACACCCCT-CCTTTGGCCAGAATG-CTGAAACAAGGT  1144
      ||||||  ||||||| ||||| ||||||||| ||||| ||||||||||| 
seq2  ACCAAC-CAAAGCACGCCCCTCCCTTTGGCC-GAATGTCTGAAACAAGG-  1137

seq1  CTCAG  1149
      |||||
seq2  CTCAG  1142

seq1: chr13_96428997_96430080
seq2: B6Ng01-013G21.g_64_1127 (reverse)

seq1  CTCGGGAGACAGAGGCAGGCAGAGCTTTATGAGTTCGAGATCAGCCTGAT  50
      |||||  |||||||||| ||||| |  |||||  ||||||||||| ||||
seq2  CTCGG--GACAGAGGCA-GCAGACC--TATGA--TCGAGATCAGCATGAT  43

seq1  CTACAGCGTGAGTGCTGGGCTAGCCAGGGCTACATAGGGAGGTCTTGTCT  100
      ||||||||| |   |||| |||||||  ||||||||| |||||| |||||
seq2  CTACAGCGTAA--TCTGGCCTAGCCA--GCTACATAGAGAGGTC-TGTCT  88

seq1  CAAACAAACACGAGAAGGAAAGGGAGCTAAGAGCATTGAGGGCTTGTGAG  150
      | ||||||| |||||||  || |||||| |||||||||| ||| ||||||
seq2  C-AACAAAC-CGAGAAG--AAAGGAGCT-AGAGCATTGA-GGCCTGTGAG  132

seq1  GAACACCTGCAAC-ATTGTTTCTCCTTAGTGAAGAGAACTAAAATTGGCT  199
      || ||| |||||| ||||||||| ||||||| ||||||||||||||||||
seq2  GACCACTTGCAACAATTGTTTCT-CTTAGTG-AGAGAACTAAAATTGGCT  180

seq1  CTGAAGAAATGGAAACGTCCCCACTGGGAGAGGATTCGAGGCATCCTTCT  249
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTGAAGAAATGGAAACGTCCCCACTAGGAGAGGATTCGAGGCATCCTTCT  230

seq1  CGTCCCCACTGGGAGAGGATTCGAGGCATCCTTCTCATAAACGGTATAGA  299
      ||||||||||||||||||||| || |||||||||||||||||||||||||
seq2  CGTCCCCACTGGGAGAGGATT-GA-GCATCCTTCTCATAAACGGTATAGA  278

seq1  CGCCACTCAGGGATGGGAATCAGAAGATAAACTGTGATCCCAGAGGAATG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCACTCAGGGATGGGAATCAGAAGATAAACTGTGATCCCAGAGGAATG  328

seq1  GGAAGTCCCTGTTC-AAGTGAGGAGGACAGAGGTCACAGTGATGTCACAT  398
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGAAGTCCCTGTTCAAAGTGAGGAGGACAGAGGTCACAGTGATGTCACAT  378

seq1  AAGTTCTATAAGCTGCTGCAGATAAGAAAGCAAACACAAGCCAAGATGGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTATAAGCTGCTGCAGATAAGAAAGCAAACACAAGCCAAGATGGA  428

seq1  AGTATCTGTTCAGAGCGTCCAGATGCATAAGTGACCGTCAGCAGTGGCTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTGTTCAGAGCGTCCAGATGCATAAGTGACCGTCAGCAGTGGCTC  478

seq1  TCTCCTTTCTCTGTTCTCATGGAATCATTAGTGACAGGATTAGGAGAGCG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTTCTCTGTTCTCATGGAATCATTAGTGACAGGATTAGGAGAGCG  528

seq1  AAACAGAGGCAATAGAATTAACTCCTATGTGCGTAATGGAGAAGGGCTTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAGGCAATAGAATTAACTCCTATGTGCGTAATGGAGAAGGGCTTC  578

seq1  AGGACGGGGCAGGCGTATTCACACAGGATCACCTATAAATACAAATGCTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACGGGGCAGGCGTATTCACACAGGATCACCTATAAATACAAATGCTG  628

seq1  GGGATCCCCAGCCTTCCCAAAGGAATCACATCATTTCCTACCATTGTTGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCCCCAGCCTTCCCAAAGGAATCACATCATTTCCTACCATTGTTGC  678

seq1  AGAGAAAGCAAATTCTTCCCAGTTGGAAAACGATGGGGGGGGGGAGTAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGCAAATTCTTCCCAGTTGGAAAACGATGGGGGGGGGGAGTAAA  728

seq1  GCTACCTTAAGTTCAACAAAACAAAACTCAGTTATTTTGAGTGTCTTATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCTTAAGTTCAACAAAACAAAACTCAGTTATTTTGAGTGTCTTATT  778

seq1  CTAAATACTATGAGTGTGTCCCACATTAGGGAGAATGTTTTATCAGAAGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATACTATGAGTGTGTCCCACATTAGGGAGAATGTTTTATCAGAAGC  828

seq1  ACAGATCCTAAAGCAGGAAGGACTCAGTGTAGCGGGATGGAGGGGGTGAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATCCTAAAGCAGGAAGGACTCAGTGTAGCGGGATGGAGGGGGTGAG  878

seq1  GTGGGAACAACAGGCCTGGCTGGGAACATCTTGTCTGTTCCTTTCCTTCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAACAACAGGCCTGGCTGGGAACATCTTGTCTGTTCCTTTCCTTCA  928

seq1  TTATCCAGGGCAGTTGCTGGGGATACAGCCTCGTGGGGCATCTGCCTTCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCAGGGCAGTTGCTGGGGATACAGCCTCGTGGGGCATCTGCCTTCC  978

seq1  TCAGTGGGCTCGGTTCTGCGGACAGACTATCATTCTTGTCTGTCCTCCCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGGCTCGGTTCTGCGGACAGACTATCATTCTTGTCTGTCCTCCCA  1028

seq1  CGTTCTTTATAAGAATGGACCTTCTCACCTGAATTC  1084
      ||||||||||||||||||||||||||||||||||||
seq2  CGTTCTTTATAAGAATGGACCTTCTCACCTGAATTC  1064