BAC Information

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BAC

Clone NameB6Ng01-013J22
Chromosome13 (Build37)
Map Location 48,124,182 - 48,257,942
singlet/doubletdoublet
Overlap genenone
Upstream geneTpmt, Aof1, Dek, LOC100039761, Ibrdc2, 4931429P17Rik
Downstream geneId4, LOC667351, Zfp169, A830005F24Rik, AW456874, Barx1, Phf2, EG667415, BC010304, C030044B11Rik, Wnk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013J22.bB6Ng01-013J22.g
ACCDH848390DH848391
length1,0751,062
definitionDH848390|Mus musculus domesticus DNA, BAC clone: B6Ng01-013J22, 5' end.DH848391|Mus musculus domesticus DNA, BAC clone: B6Ng01-013J22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,124,182 - 48,125,240)(48,256,882 - 48,257,942)
sequence
gaattccagtgagggacagacacaagcgtgccaccaagagaacctgggca
tcagagatcagacaggccctgactgtgagaagtttggcttttcagaaatg
tccactgtccactcgtcaaacaaccacaagccactcatgtacccgatgcc
aggcgcccggtgaaaggtcagtgactgaaacacaaatcagccagcgggtc
ttcatcaggaactcagtatctgcccactaggggacatgtgacctcataca
cttaagcaaagtaggtagaccagagatgtacgccagcatcatgagggatt
gccaggtgacagacatgtgcccaatacttctaaggagacctcaaaggaag
attcgtctgctgttcagctcttacgagtatataataattgtacaaaatag
tgggtttaattttgacactttcattcagagagagagagagagagagagag
agagtactttgatcattttaactttgttatctcctctccctcccttaatc
cattcctctttgctaacagtttctcatacacatcttttctttctttcttt
ctctttcattctttctttctttttcttttctttttttttttttttttttt
ttttttttttttgtccacattctacagatgacagaaccgagaaatttgtt
tttcccagagtccagctcatttttgcttaacacgatgctctccgggtccc
atgcattttccacaaaaaggcataaattttattctccttttgcggccaac
tacaactcccatggtttaatcctgtcacttttttttatcacttaatctta
tcagggagaccctaggcttgactccgtgacatgggctacctgaacagtgc
caggggaagcagctgtgttgtttgcaatgtcctctggggtgtgggtgact
ttgatgtcttcaggtgtggttaccccagagtggtttggctagaaccatat
ggaagaagcctatttactttttttttttttttgagaaaaagttatttcta
tgctggagctatatagaacttttataaactctctcacagacagaatgctc
aaagcagctttgtgccgtgatgtaa
gaattctagggtcagtgatgggaccctgtctcaaaaagtaaggtagtgag
agattgaagaagacaccggacactgatccctagtgtatgcacacatgtgc
atgggcaccattgtgcacacacacacacacacacacacacacacacaaag
aagggagtgagtttgatctgcagatgagaagacagtcaagactattttaa
attaagaaagttttatagggccgaagagatggttcagtggttaagagcac
tgactgctcttccagaggtcttgagttcaattcccagcaatcacacagta
gcttacaactatctgtaatgggactcctggcatgtctgaagacagcgaca
gtgtactcacatatataaaataaataaatcttaaaaaaagaaagaaagaa
agtttgttatgttgcacatttgttgggatttttgacacctggaagaaagc
cctttgatcattaatgtcttagtaatgatagatttataaggaccctccct
ttctttgtgtgagatactctaagctatttatttccttaactctcatacca
gctttcagggtgtgctattgctgtgtagccacacgtttcatgtatatttc
ctatttcaaagatttagcttttatgatcttgattttcctttgatttccca
gagcccaaataacccaccagaagctcccaagaaaagcaccgcttcagggt
tagcctcacctgtcccagacccttaaatggggacacacagaaatgattta
aaacaaagatccatgtgtggatataagcttcgaatattcaatacaaacct
ttctcctctctcattcactgaacaaggattcagtcctaaggagcctgtga
aaataaatccccaaggcacaggtggggtgggccaataaagaagaatggaa
gagcaacctttggtgcctgtaatggtgggtcaggcaaaggccagccccct
cccccaacttccatggaccatgggtaccaactctttctctataacaaaga
caatttgcttttaatgtagtatgagacaatgtgaccagacaaagggagcc
tcagcttattat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_48124182_48125240
seq2: B6Ng01-013J22.b_48_1122

seq1  GAATTCCAGTGAGGGACAGACACAAGCGTGCCACCAAGAGAACCTGGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGAGGGACAGACACAAGCGTGCCACCAAGAGAACCTGGGCA  50

seq1  TCAGAGATCAGACAGGCCCTGACTGTGAGAAGTTTGGCTTTTCAGAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGATCAGACAGGCCCTGACTGTGAGAAGTTTGGCTTTTCAGAAATG  100

seq1  TCCACTGTCCACTCGTCAAACAACCACAAGCCACTCATGTACCCGATGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGTCCACTCGTCAAACAACCACAAGCCACTCATGTACCCGATGCC  150

seq1  AGGCGCCCGGTGAAAGGTCAGTGACTGAAACACAAATCAGCCAGCGGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGCCCGGTGAAAGGTCAGTGACTGAAACACAAATCAGCCAGCGGGTC  200

seq1  TTCATCAGGAACTCAGTATCTGCCCACTAGGGGACATGTGACCTCATACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCAGGAACTCAGTATCTGCCCACTAGGGGACATGTGACCTCATACA  250

seq1  CTTAAGCAAAGTAGGTAGACCAGAGATGTACGCCAGCATCATGAGGGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGCAAAGTAGGTAGACCAGAGATGTACGCCAGCATCATGAGGGATT  300

seq1  GCCAGGTGACAGACATGTGCCCAATACTTCTAAGGAGACCTCAAAGGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGTGACAGACATGTGCCCAATACTTCTAAGGAGACCTCAAAGGAAG  350

seq1  ATTCGTCTGCTGTTCAGCTCTTACGAGTATATAATAATTGTACAAAATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGTCTGCTGTTCAGCTCTTACGAGTATATAATAATTGTACAAAATAG  400

seq1  TGGGTTTAATTTTGACACTTTCATTCAGAGAGAGAGAGAGAGAGAGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTAATTTTGACACTTTCATTCAGAGAGAGAGAGAGAGAGAGAGAG  450

seq1  AGAGTACTTTGATCATTTTAACTTTGTTATCTCCTCTCCCTCCCTTAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTACTTTGATCATTTTAACTTTGTTATCTCCTCTCCCTCCCTTAATC  500

seq1  CATTCCTCTTTGCTAACAGTTTCTCATACACATCTTTTCTTTCTTTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTCTTTGCTAACAGTTTCTCATACACATCTTTTCTTTCTTTCTTT  550

seq1  CTCTTTCATTCTTTCTTTCTTTTTCTTTTC-TTTTTTTTTTTTTTTTTTT  599
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTCTTTCATTCTTTCTTTCTTTTTCTTTTCTTTTTTTTTTTTTTTTTTTT  600

seq1  TTTTTTTTTTTTGTCAACATTCTACAGATGACAGAACCGAGAAATTTGTT  649
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTGTCCACATTCTACAGATGACAGAACCGAGAAATTTGTT  650

seq1  TTTCCCAGAGTCCAGCTCA-TTTTGCTTAACACGATGCTCTCC-GGTCCC  697
      ||||||||||||||||||| ||||||||||||||||||||||| ||||||
seq2  TTTCCCAGAGTCCAGCTCATTTTTGCTTAACACGATGCTCTCCGGGTCCC  700

seq1  ATGCATTTTCCAC-AAAAGGCAT-AATTTTATTCTCC-TTTGCGGCCAAC  744
      ||||||||||||| ||||||||| ||||||||||||| ||||||||||||
seq2  ATGCATTTTCCACAAAAAGGCATAAATTTTATTCTCCTTTTGCGGCCAAC  750

seq1  TACAACTCCAAT-GTTTAAATCTGTCAC-TTTTTTTATCACTT-ATC-TA  790
      ||||||||| || ||||||  ||||||| |||||||||||||| ||| ||
seq2  TACAACTCCCATGGTTTAATCCTGTCACTTTTTTTTATCACTTAATCTTA  800

seq1  TCAGGGAGACCCTAGGC-TGACTCCGTGACAT-GGCTA-CTGAACAGTGC  837
      ||||||||||||||||| |||||||||||||| ||||| |||||||||||
seq2  TCAGGGAGACCCTAGGCTTGACTCCGTGACATGGGCTACCTGAACAGTGC  850

seq1  CAGGGGAAGCAGCTGTGTTGTTTGCAAATGT-CTCTGGTGTGT-GGTGAC  885
      ||||||||||||||||||||||||| ||||| |||||| |||| ||||||
seq2  CAGGGGAAGCAGCTGTGTTGTTTGC-AATGTCCTCTGGGGTGTGGGTGAC  899

seq1  TTTGATGTCTTCAGGTGTGTATACCCCAGAGTGGTTTGGCTAG-ACCATA  934
      |||||||||||||||||||  |||||||||||||||||||||| ||||||
seq2  TTTGATGTCTTCAGGTGTGGTTACCCCAGAGTGGTTTGGCTAGAACCATA  949

seq1  TGG-AGATGCTATTTTTACTTTTTTTTTTTTTTTGAG-AAAAGTTATTTC  982
      ||| ||| ||  | ||||||||||||||||||||||| ||||||||||||
seq2  TGGAAGAAGC-CTATTTACTTTTTTTTTTTTTTTGAGAAAAAGTTATTTC  998

seq1  TATAGCTGGAGC--TATAGAACTTTTATAACACTCTCTCA-AGACAAGAT  1029
      ||| ||||||||  |||||||||||||||| ||||||||| |||||  ||
seq2  TAT-GCTGGAGCTATATAGAACTTTTATAA-ACTCTCTCACAGACAGAAT  1046

seq1  GCTCAAAGACAGGCTTTGTGCTG-GATGTAA  1059
      |||||||| || ||||||||| | |||||||
seq2  GCTCAAAG-CA-GCTTTGTGCCGTGATGTAA  1075

seq1: chr13_48256882_48257942
seq2: B6Ng01-013J22.g_65_1126 (reverse)

seq1  ATAATAAGCTAGAAGCT-CCTTTGTCTGTTCAACATTGTTCTTCATTACT  49
      |||||||||| || ||| |||||||||| || |||||||   ||| ||||
seq2  ATAATAAGCT-GAGGCTCCCTTTGTCTGGTC-ACATTGT--CTCA-TACT  45

seq1  ACATGAAAAGCAAATTGTCTTTG-TATAGAGAAAGAG-TGGTACCCATGG  97
      |||| |||||||||||||||||| ||||||||||||| ||||||||||||
seq2  ACATTAAAAGCAAATTGTCTTTGTTATAGAGAAAGAGTTGGTACCCATGG  95

seq1  -CCATGGGAGTTGGGGGGAGGGGGCTGCGCCTCTGCCTGA-CCACC-TTA  144
       |||||| |||| |||||||||||||| |||| ||||||| ||||| |||
seq2  TCCATGGAAGTT-GGGGGAGGGGGCTG-GCCTTTGCCTGACCCACCATTA  143

seq1  CAGCCACC-AAGGTTGCTCTTCCA-TCTTCTTTATTGGCCCA-CCCACCT  191
      ||| |||| ||||||||||||||| ||||||||||||||||| |||||||
seq2  CAGGCACCAAAGGTTGCTCTTCCATTCTTCTTTATTGGCCCACCCCACCT  193

seq1  GTGCCTT-GGGAATTATTTTCACAGGCTCCTTAGGACTGAATCCTTGTTC  240
      ||||||| |||| |||||||||||||||||||||||||||||||||||||
seq2  GTGCCTTGGGGATTTATTTTCACAGGCTCCTTAGGACTGAATCCTTGTTC  243

seq1  AGTTGAATGAGAGAGGAGAAAGGTTTGTATTGAATATTCCGAAGCTTATA  290
      || ||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AG-TGAATGAGAGAGGAGAAAGGTTTGTATTGAATATT-CGAAGCTTATA  291

seq1  TCCACACATGGATCCTTGTTTTAAATCATTTCTGTGTGTCCCCATTTAAG  340
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCCACACATGGATCTTTGTTTTAAATCATTTCTGTGTGTCCCCATTTAAG  341

seq1  GGTCTGGGACAGGTGAGGCTAACCCTGAAGCGGTGCTTTTCTTGGGAGCT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGGGACAGGTGAGGCTAACCCTGAAGCGGTGCTTTTCTTGGGAGCT  391

seq1  TCTGGTGGGTTATTTGGGCTCTGGGAAATCAAAGGAAAATCAAGATCATA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGGGTTATTTGGGCTCTGGGAAATCAAAGGAAAATCAAGATCATA  441

seq1  AAAGCTAAATCTTTGAAATAGGAAATATACATGAAACGTGTGGCTACACA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAAATCTTTGAAATAGGAAATATACATGAAACGTGTGGCTACACA  491

seq1  GCAATAGCACACCCTGAAAGCTGGTATGAGAGTTAAGGAAATAAATAGCT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAGCACACCCTGAAAGCTGGTATGAGAGTTAAGGAAATAAATAGCT  541

seq1  TAGAGTATCTCACACAAAGAAAGGGAGGGTCCTTATAAATCTATCATTAC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTATCTCACACAAAGAAAGGGAGGGTCCTTATAAATCTATCATTAC  591

seq1  TAAGACATTAATGATCAAAGGGCTTTCTTCCAGGTGTCAAAAATCCCAAC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACATTAATGATCAAAGGGCTTTCTTCCAGGTGTCAAAAATCCCAAC  641

seq1  AAATGTGCAACATAACAAACTTTCTTTCTTTCTTTTTTTAAGATTTATTT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGCAACATAACAAACTTTCTTTCTTTCTTTTTTTAAGATTTATTT  691

seq1  ATTTTATATATGTGAGTACACTGTCGCTGTCTTCAGACATGCCAGGAGTC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATATATGTGAGTACACTGTCGCTGTCTTCAGACATGCCAGGAGTC  741

seq1  CCATTACAGATAGTTGTAAGCTACTGTGTGATTGCTGGGAATTGAACTCA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTACAGATAGTTGTAAGCTACTGTGTGATTGCTGGGAATTGAACTCA  791

seq1  AGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAACCATCTCTTCG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAACCATCTCTTCG  841

seq1  GCCCTATAAAACTTTCTTAATTTAAAATAGTCTTGACTGTCTTCTCATCT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTATAAAACTTTCTTAATTTAAAATAGTCTTGACTGTCTTCTCATCT  891

seq1  GCAGATCAAACTCACTCCCTTCTTTGTGTGTGTGTGTGTGTGTGTGTGTG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCAAACTCACTCCCTTCTTTGTGTGTGTGTGTGTGTGTGTGTGTG  941

seq1  TGTGTGCACAATGGTGCCCATGCACATGTGTGCATACACTAGGGATCAGT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCACAATGGTGCCCATGCACATGTGTGCATACACTAGGGATCAGT  991

seq1  GTCCGGTGTCTTCTTCAATCTCTCACTACCTTACTTTTTGAGACAGGGTC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGGTGTCTTCTTCAATCTCTCACTACCTTACTTTTTGAGACAGGGTC  1041

seq1  CCATCACTGACCCTAGAATTC  1061
      |||||||||||||||||||||
seq2  CCATCACTGACCCTAGAATTC  1062