BAC Information

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BAC

Clone NameB6Ng01-015E03
Chromosome13 (Build37)
Map Location 72,307,464 - 72,430,696
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC627230, LOC100042360, Irx1
Downstream geneLOC100042828, LOC100042832, LOC100042836, Irx2, LOC621486, Irx4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015E03.bB6Ng01-015E03.g
ACCDH849567DH849568
length1,0161,042
definitionDH849567|Mus musculus domesticus DNA, BAC clone: B6Ng01-015E03, 5' end.DH849568|Mus musculus domesticus DNA, BAC clone: B6Ng01-015E03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,429,657 - 72,430,696)(72,307,464 - 72,308,516)
sequence
gaattcagtgggtcaggctcaatgagtgaactccaccagcttctctctta
gcatagggaaaagggctgggtgggccacagacaggcaacattgttcagta
gccttctttatgaagcctcattgtaatctgagcttagttttcaattttgc
caatttttaaatacttaggataggcaaccctatatttctgaaaatagagt
tttggtttttttctcccaaagaatacaatgaacttttaaatgatttaaag
caagacattttggcaggcacaaacgactgtctccctggcccaaaaaaacc
ttcttgatgattcaagactcctcaacatgtttggaagacaggtacaattt
taaaggttttttttttttttttttttaactgccagggtagttacaggttc
ttcaacgaaagaaactcccactgtctagccctggtggaaatgacactact
gaagctttaggggtgccacaatggggctaaacctctggtcctgcctgtgg
ctgctgattgccggaaacagccttgcgagcaatttgctacctctcggcag
ccagcggcctgtgttgcagaggcctcacacagtgccctctgctgagccac
aagaggctcctctccggaggaggaggcttgctttccctgcacttgccaat
atcgctgctgcggacagacgtttaaactggaaacaaaggatcaaaagctc
ccaggcagcacagtgagcagggtcctcaagttccaggctctggtcattat
tttaagaaaacgcgagctaatttctttacagcgaggcagacaggcgttgc
ctcccttctctagatgagtggtgtggtttggtgcgacatgccagtgcgtg
ctgtttggaaagcaaagggggtgctgaaatgtagccatgctggtgtcttt
gtaaaggtgatacatgcggtctgtctgtcagacaatccccacagtgcagt
atttataaatttctctacttgtctgagggctttcagcagacgtgggagct
gcggctcatcactgaa
gaattcttcttttccactagtatgtgaagtgatggggaatataaggcaga
taggaaagggggaccagaatttaaagaggggccagtgtatgaaggaaagt
tctgtttcccaaagaggaagtctatggtctcctgtgctttaagaacaggc
aagagctcaaaaggagacttggaaaacaatgaaagtatgaaagataagcc
agccacttctctgctgccacacccaaccctgccattggggacatttctga
cacacttggatggctaatatcctcactggctttgtgactgacaggggagt
aaggggaaagaggacatgctgccaaggaggatcttttggagaacagccta
gatcagtgtatccagtaagcaagctgccaccacgaagactccaacagcaa
gtctccaaagccatggaagaagtgaaagacagacggtgtaaactggagaa
gtcgcaattgtaagcccccagtcgttgtggagagggcatgggtggacaaa
agatacgaggggcttccctgcactgccaggtcagcctgggcattggactg
gggcctctgcacatcagatgaatccttcagaatcaacaagagccccacag
cagggctgaatctttcagcaaggctgtgtgctttcatgtgactttgaaca
ctccatcttgagggatgtatgattgacggatacctacagattcacggatc
tagaatgggatcgaaaggagacagactgtgctgacgatgttctcccttcc
acatttcttcctattgccgttaatttttaccaagctgactgcccagaata
attatttctgagttaaattgtttcctgaattcatccgtctcacaatgtgt
gtaataaccaggtctgtttattttttcttaagtattcatggtatttcatc
aaaattcatagacctgcttctaaggggacatgcttttaaatattcaaatt
tatagtattttttattaaacatattaaccaataattattttcctatgaaa
attattctgactgccccttctgatgttatgaaggcttgtagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_72429657_72430696
seq2: B6Ng01-015E03.b_48_1063 (reverse)

seq1  TTCAGTGTGAATGAGCCCGGCAAGCCTTCCCACGTCTGGCTGAAAAGGCC  50
      |||||||   |||||||  || |||  |||||||||| |||||||    |
seq2  TTCAGTG---ATGAGCC--GC-AGC--TCCCACGTCT-GCTGAAA---GC  38

seq1  CCTCAGACCAAAGTTTAGAGATAATTTTATAAATACCTGCACTTGTTGGG  100
      ||||||||  ||||    ||| || |||||||||| |||||| |||  ||
seq2  CCTCAGAC--AAGT----AGAGAAATTTATAAATA-CTGCAC-TGT--GG  78

seq1  GGAATTTGTCTGACAGACAGACCGCATGTATCACCTTTACAAAGACACCA  150
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGA--TTGTCTGACAGACAGACCGCATGTATCACCTTTACAAAGACACCA  126

seq1  GCATGGCTACATTTCAGCACCCCCTTTGCTTTCCAAACAGCACGCACTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGCTACATTTCAGCACCCCCTTTGCTTTCCAAACAGCACGCACTGG  176

seq1  CATGTCGCACCAAACCACACCACTCATCTAGAGAAGGGAGGCAACGCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCGCACCAAACCACACCACTCATCTAGAGAAGGGAGGCAACGCCTG  226

seq1  TCTGCCTCGCTGTAAAGAAATTAGCTCGCGTTTTCTTAAAATAATGACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCGCTGTAAAGAAATTAGCTCGCGTTTTCTTAAAATAATGACCA  276

seq1  GAGCCTGGAACTTGAGGACCCTGCTCACTGTGCTGCCTGGGAGCTTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGGAACTTGAGGACCCTGCTCACTGTGCTGCCTGGGAGCTTTTGA  326

seq1  TCCTTTGTTTCCAGTTTAAACGTCTGTCCGCAGCAGCGATATTGGCAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGTTTCCAGTTTAAACGTCTGTCCGCAGCAGCGATATTGGCAAGT  376

seq1  GCAGGGAAAGCAAGCCTCCTCCTCCGGAGAGGAGCCTCTTGTGGCTCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGAAAGCAAGCCTCCTCCTCCGGAGAGGAGCCTCTTGTGGCTCAGC  426

seq1  AGAGGGCACTGTGTGAGGCCTCTGCAACACAGGCCGCTGGCTGCCGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCACTGTGTGAGGCCTCTGCAACACAGGCCGCTGGCTGCCGAGAG  476

seq1  GTAGCAAATTGCTCGCAAGGCTGTTTCCGGCAATCAGCAGCCACAGGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAAATTGCTCGCAAGGCTGTTTCCGGCAATCAGCAGCCACAGGCAG  526

seq1  GACCAGAGGTTTAGCCCCATTGTGGCACCCCTAAAGCTTCAGTAGTGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGAGGTTTAGCCCCATTGTGGCACCCCTAAAGCTTCAGTAGTGTCA  576

seq1  TTTCCACCAGGGCTAGACAGTGGGAGTTTCTTTCGTTGAAGAACCTGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACCAGGGCTAGACAGTGGGAGTTTCTTTCGTTGAAGAACCTGTAA  626

seq1  CTACCCTGGCAGTTAAAAAAAAAAAAAAAAAAAACCTTTAAAATTGTACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCTGGCAGTTAAAAAAAAAAAAAAAAAAAACCTTTAAAATTGTACC  676

seq1  TGTCTTCCAAACATGTTGAGGAGTCTTGAATCATCAAGAAGGTTTTTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCCAAACATGTTGAGGAGTCTTGAATCATCAAGAAGGTTTTTTTG  726

seq1  GGCCAGGGAGACAGTCGTTTGTGCCTGCCAAAATGTCTTGCTTTAAATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGGAGACAGTCGTTTGTGCCTGCCAAAATGTCTTGCTTTAAATCA  776

seq1  TTTAAAAGTTCATTGTATTCTTTGGGAGAAAAAAACCAAAACTCTATTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGTTCATTGTATTCTTTGGGAGAAAAAAACCAAAACTCTATTTT  826

seq1  CAGAAATATAGGGTTGCCTATCCTAAGTATTTAAAAATTGGCAAAATTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATATAGGGTTGCCTATCCTAAGTATTTAAAAATTGGCAAAATTGA  876

seq1  AAACTAAGCTCAGATTACAATGAGGCTTCATAAAGAAGGCTACTGAACAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAGCTCAGATTACAATGAGGCTTCATAAAGAAGGCTACTGAACAA  926

seq1  TGTTGCCTGTCTGTGGCCCACCCAGCCCTTTTCCCTATGCTAAGAGAGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCCTGTCTGTGGCCCACCCAGCCCTTTTCCCTATGCTAAGAGAGAA  976

seq1  GCTGGTGGAGTTCACTCATTGAGCCTGACCCACTGAATTC  1040
      ||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTGGAGTTCACTCATTGAGCCTGACCCACTGAATTC  1016

seq1: chr13_72307464_72308516
seq2: B6Ng01-015E03.g_69_1110

seq1  GAATTCTTCTTTTCCACTAGTATGTGAAGTGATGGGGAATATAAGGCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTTTCCACTAGTATGTGAAGTGATGGGGAATATAAGGCAGA  50

seq1  TAGGAAAGGGGGACCAGAATTTAAAGAGGGGCCAGTGTATGAAGGAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAAGGGGGACCAGAATTTAAAGAGGGGCCAGTGTATGAAGGAAAGT  100

seq1  TCTGTTTCCCAAAGAGGAAGTCTATGGTCTCCTGTGCTTTAAGAACAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTCCCAAAGAGGAAGTCTATGGTCTCCTGTGCTTTAAGAACAGGC  150

seq1  AAGAGCTCAAAAGGAGACTTGGAAAACAATGAAAGTATGAAAGATAAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTCAAAAGGAGACTTGGAAAACAATGAAAGTATGAAAGATAAGCC  200

seq1  AGCCACTTCTCTGCTGCCACACCCAACCCTGCCATTGGGGACATTTCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTTCTCTGCTGCCACACCCAACCCTGCCATTGGGGACATTTCTGA  250

seq1  CACACTTGGATGGCTAATATCCTCACTGGCTTTGTGACTGACAGGGGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTGGATGGCTAATATCCTCACTGGCTTTGTGACTGACAGGGGAGT  300

seq1  AAGGGGAAAGAGGACATGCTGCCAAGGAGGATCTTTTGGAGAACAGCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGAAAGAGGACATGCTGCCAAGGAGGATCTTTTGGAGAACAGCCTA  350

seq1  GATCAGTGTATCCAGTAAGCAAGCTGCCACCACGAAGACTCCAACAGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGTGTATCCAGTAAGCAAGCTGCCACCACGAAGACTCCAACAGCAA  400

seq1  GTCTCCAAAGCCATGGAAGAAGTGAAAGACAGACGGTGTAAACTGGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCAAAGCCATGGAAGAAGTGAAAGACAGACGGTGTAAACTGGAGAA  450

seq1  GTCGCAATTGTAAGCCCCCAGTCGTTGTGGAGAGGGCATGGGTGGACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCAATTGTAAGCCCCCAGTCGTTGTGGAGAGGGCATGGGTGGACAAA  500

seq1  AGATACGAGGGGCTTCCCTGCACTGCCAGGTCAGCCTGGGCATTGGACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACGAGGGGCTTCCCTGCACTGCCAGGTCAGCCTGGGCATTGGACTG  550

seq1  GGGCCTCTGCACATCAGATGAATCCTTCAGAATCAACAAGAGCCCCACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTCTGCACATCAGATGAATCCTTCAGAATCAACAAGAGCCCCACAG  600

seq1  CAGGGCTGAATCTTTCAGCAAGGCTGTGTGCTTTCATGTGACTTTGAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTGAATCTTTCAGCAAGGCTGTGTGCTTTCATGTGACTTTGAACA  650

seq1  CTCCATCTTGAGGGATGTATGATTGACGGATACCTACAGATTCACGGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCTTGAGGGATGTATGATTGACGGATACCTACAGATTCACGGATC  700

seq1  TAGAATGGGATCGAAAGGAGACAGACTGTGCTGACGATGTTCTCCCTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGGGATCGAAAGGAGACAGACTGTGCTGACGATGTTCTCCCTTCC  750

seq1  ACATTTCTTCCTATTGCCGTTAATTTTTACCAAGCTGACTGCCCAGAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCTTCCTATTGCCGTTAATTTTTACCAAGCTGACTGCCCAGAATA  800

seq1  ATTATTTCTGAGTTAAAATTGTTTCCTGTAATTCATCCGTCTCACAATTG  850
      |||||||||||||| ||||||||||||| |||||||||||||||||| ||
seq2  ATTATTTCTGAGTT-AAATTGTTTCCTG-AATTCATCCGTCTCACAA-TG  847

seq1  TGTGTAATAACCAGGTCTGTTTATTTTTTTCTTAAGTAATCATGGTATTT  900
      ||||||||||||||||||||||| |||||||||||||| |||||||| ||
seq2  TGTGTAATAACCAGGTCTGTTTA-TTTTTTCTTAAGTATTCATGGTA-TT  895

seq1  TCATCAAAATTCATTAGAACCTGCTTCTAGGTGGACATGCTTTTAAAATA  950
      ||||||||||||| ||| ||||||||||| | |||||||||||| |||||
seq2  TCATCAAAATTCA-TAG-ACCTGCTTCTAAGGGGACATGCTTTT-AAATA  942

seq1  TTCAAATTTATAGTTAATGTTTTATTAACCATATTTAACCTATAATTATT  1000
      ||||||||||||||  || ||||||||| |||| |||||| |||||||||
seq2  TTCAAATTTATAGT--ATTTTTTATTAAACATA-TTAACCAATAATTATT  989

seq1  TTTCTAATGAAAATTATTCTGACTGCGCCATCTGATGTTATG-AGGCTAG  1049
      || || |||||||||||||||||||| || |||||||||||| ||||| |
seq2  TTCCT-ATGAAAATTATTCTGACTGCCCCTTCTGATGTTATGAAGGCTTG  1038

seq1  TAGT  1053
      ||||
seq2  TAGT  1042