BAC Information

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BAC

Clone NameB6Ng01-015L17
Chromosome13 (Build37)
Map Location 47,848,516 - 48,001,161
singlet/doubletdoublet
Overlap genenone
Upstream geneKif13a, LOC544928, Nhlrc1, Tpmt, Aof1, Dek, LOC100039761, Ibrdc2
Downstream gene4931429P17Rik, Id4, LOC667351, Zfp169, A830005F24Rik, AW456874, Barx1, Phf2, EG667415, BC010304
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015L17.bB6Ng01-015L17.g
ACCDH849909DH849910
length3801,145
definitionDH849909|Mus musculus domesticus DNA, BAC clone: B6Ng01-015L17, 5' end.DH849910|Mus musculus domesticus DNA, BAC clone: B6Ng01-015L17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,000,778 - 48,001,161)(47,848,516 - 47,849,172)
sequence
ttccaagaacagagtccatatgctgttagtgaaatgagcgatcatgctaa
gtctagattgtttttagatcttgctttggctgatggtttagcagagagag
agagagagagagagagagagagagagagagagagagagagagagagagag
agcgagagcctggaactggagctataactcagtggcagagcacttgccta
gattcctagcatgaaagaagttctgattccagttcccagcatcacacaca
cacacacacacacacacacacacacacacatgtgcccatacacactcaca
gaatgcatgcatgtatatacacagagagaaaagaaaggagggagaaggaa
gaagggaggaatggaagaggaggagaagga
gaattcaaattaacttgttgagtttccgatgagctctgataagactaaaa
tagataattaaataaggaaaagaatacatcaacaaacggagaagcttgac
aaataagcatgagcaaggaaaagaatatagcagaaacttcgaggctgaag
attacagtggccgaactgaaatacttaatttgcaatttcaatggtaaaca
taaaaaaaaaatagagggaagattaaatgaaaccgaagacagttattttg
aaataaatcattcagaagaagaacaacaacaaaaataaagaacaaaaagt
agcttgtttttttttcatttttaaaaaagccaataagatttatgacatac
cataaaaccaaccaatacaagcattatgaaaaattcataagaaagggaaa
acagaaaactcagaaagtctatgtacagaaattataactgaaaacacccc
aaatctgtggagtgatagaactatctgggtgcatgaaagttgaatcatgg
agggaatattttaatagaataatatgataaaatagagtatattaatagaa
taatgagacaaaatctataaaagtctctcataaaagaaaagactgtaatt
acaggatttcacataaccaaaacctaatagctatttcttttcaaactctt
cccaaaaaaactgaagagaagatttctcccaggctcattccaggagccca
gccctaccctaatactaaagtcaggacagtgcaatgacatggatgacaac
ccatatccctaaagaacatgtatgcagagctctgccacatacagtagcaa
tctggatgaaatacagagcaaaggaattctgcactgtgattgctggcatt
tgttcctaaatgcaagaatggttcacccaaggcaaatcaataaaatatac
ataccaaaatataacatataccaaaataaacaataataaggagaaaaact
tacatcaccgatggatgcagaaatgtcatttgcaaggtgtattggaaaaa
gattgactcaaattatttgaagaaggcaagaaaagtgagccctaacaact
aaacaaacaaggaactacaaacaaactaaaaaacttcaagtagcatctgg
aaaggcctttttcttccacaactattcctacgtgtgtgtgacact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_48000778_48001161
seq2: B6Ng01-015L17.b_55_434 (reverse)

seq1  TCCTTCTCCTCCTCTTCCATTCCTCCCTTCTTCCTTCTCCCTCCTTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTCCTCCTCTTCCATTCCTCCCTTCTTCCTTCTCCCTCCTTTCTT  50

seq1  TTCTCTCTGTGTATATACATGCATGCATTCTGTGAGTGTGTATGGGCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTGTGTATATACATGCATGCATTCTGTGAGTGTGTATGGGCACA  100

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATGCTGGGAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATGCTGGGAACT  150

seq1  GGAATCAGAACTTCTTTCATGCTAGGAATCTAGGCAAGTGCTCTGCCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCAGAACTTCTTTCATGCTAGGAATCTAGGCAAGTGCTCTGCCACT  200

seq1  GAGTTATAGCTCCAGTTCCAGGCTCTCGCTCTCTCTCTCTCTCTCTCTCT  250
      ||||||||||||||||||||||||||||    ||||||||||||||||||
seq2  GAGTTATAGCTCCAGTTCCAGGCTCTCG----CTCTCTCTCTCTCTCTCT  246

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCTAAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCTAAACC  296

seq1  ATCAGCCAAAGCAAGATCTAAAAACAATCTAGACTTAGCATGATCGCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCCAAAGCAAGATCTAAAAACAATCTAGACTTAGCATGATCGCTCA  346

seq1  TTTCACTAACAGCATATGGACTCTGTTCTTGGAA  384
      ||||||||||||||||||||||||||||||||||
seq2  TTTCACTAACAGCATATGGACTCTGTTCTTGGAA  380

seq1: chr13_47848516_47849172
seq2: B6Ng01-015L17.g_562_1216

seq1  TGAATCATGGAGGGAATATTTTAATAGAATAATATGATAAAATAGAGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCATGGAGGGAATATTTTAATAGAATAATATGATAAAATAGAGTAT  50

seq1  ATTAATAGAATAATGAGACAAAATCTATAAAAGTCTCTCATAAAAGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATAGAATAATGAGACAAAATCTATAAAAGTCTCTCATAAAAGAAAA  100

seq1  GACTGTAATTACAGGATTTCACATAACCAAAACCTAATAGCTA-TTCTTT  149
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GACTGTAATTACAGGATTTCACATAACCAAAACCTAATAGCTATTTCTTT  150

seq1  TCAAACTCTTCCCAAAAAAACTGAAGAGAAGA-TTCTCCCAGGCTCATTC  198
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCAAACTCTTCCCAAAAAAACTGAAGAGAAGATTTCTCCCAGGCTCATTC  200

seq1  CAGGAGCCCAGCCCTACCCTAATACTAAAGTCAGGACAGTGCAATGACAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCCCAGCCCTACCCTAATACTAAAGTCAGGACAGTGCAATGACAT  250

seq1  GGATGACAACCCATATCCCTAAAGAACATGTATGCAGAGCTCTGCCACAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGACAACCCATATCCCTAAAGAACATGTATGCAGAGCTCTGCCACAT  300

seq1  ACAGTAGCAATCTGGATGAAATAACAGAGCAAAGGAATTCTGCACTGTGA  348
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACAGTAGCAATCTGGATGAAAT-ACAGAGCAAAGGAATTCTGCACTGTGA  349

seq1  TTGGCTGGCATTTGTTCCTAAATGCAAGAATGGTTCAACCCAAGCAAATC  398
      || |||||||||||||||||||||||||||||||||| || | |||||||
seq2  TT-GCTGGCATTTGTTCCTAAATGCAAGAATGGTTCACCCAAGGCAAATC  398

seq1  AATAAATATA-ACATACCAAAATATAACATATACCAAAATAAACAATAAT  447
      |||||| ||| |||||||||||||||||||||||||||||||||||||||
seq2  AATAAA-ATATACATACCAAAATATAACATATACCAAAATAAACAATAAT  447

seq1  AAAGGAGAAAAACATACAATCACCGATGGATGCAGAAATGTCATTTGCAG  497
       |||||||||||| ||| ||||||||||||||||||||||||||||||| 
seq2  -AAGGAGAAAAACTTAC-ATCACCGATGGATGCAGAAATGTCATTTGCAA  495

seq1  GGTGTATTGGAAAAAGA-TGACTCAAATTATTTGAAG-AGGC-AGAGAAG  544
      ||||||||||||||||| ||||||||||||||||||| |||| ||| |||
seq2  GGTGTATTGGAAAAAGATTGACTCAAATTATTTGAAGAAGGCAAGAAAAG  545

seq1  TGAGCCCTAAACAACTAAAACAAACAAAGAA--ACAAACAAACAAAACAA  592
      |||||||| ||||||| |||||||||| |||  ||||||||||       
seq2  TGAGCCCT-AACAACT-AAACAAACAAGGAACTACAAACAAAC------T  587

seq1  AAAAACCTCCAAGTAGCCATCCTGGAAGGCC-TTTTCATTCACAACTA-T  640
      ||||| || ||||||| ||||  | |||||| ||||| | |||||||| |
seq2  AAAAAACTTCAAGTAG-CATCTGGAAAGGCCTTTTTCTTCCACAACTATT  636

seq1  CCTAC--GTGTGTGACACT  657
      |||||  ||||||||||||
seq2  CCTACGTGTGTGTGACACT  655