BAC Information

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BAC

Clone NameB6Ng01-016O08
Chromosome13 (Build37)
Map Location 45,855,317 - 45,982,772
singlet/doubletdoublet
Overlap geneAtxn1
Upstream geneJarid2, Dtnbp1, Hsp25-ps1, LOC100039502, LOC667204, LOC100039533, Mylip, Gmpr
Downstream gene5033430I15Rik, ENSMUSG00000062282, Gm1574, Rbm24, Cap2, C78339, Nup153, Kif13a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016O08.bB6Ng01-016O08.g
ACCDH850731DH850732
length1,1601,114
definitionDH850731|Mus musculus domesticus DNA, BAC clone: B6Ng01-016O08, 5' end.DH850732|Mus musculus domesticus DNA, BAC clone: B6Ng01-016O08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,855,317 - 45,856,500)(45,981,646 - 45,982,772)
sequence
gaattcctccttctttcagtctgtcatttagatggttattagtagttgcc
agacagcttttatcaatgtctctaatttacagagtcagactaaacgcctt
ttgtttctaactacaacacacagggtctttatgttagacaatttaaacaa
gcatcaaagcctctgttgatactgtctctccttttattctccagttttgc
taatacaagggacagcctgtcctagtaattattaccaggctaatgtcagg
ttcagcttagcacataaaatacctcttcagtgtagctttctttgcaagag
atcaaaacattttttttaatggcaacatcaaacagaatcaacatgtaaac
acgtttcaataaaaattctttcctctccagtgatttcttaatatttggaa
ctctttattagttccctttgcttccaaatggtaacacagcacgctacttt
tcatactgtcttctgagactctatcacatttactaacagtgaatgttctg
tgctggttttggtaatgttctagaactaatcaagtttgtcacatggcttg
actttggaggtcaggaaggaaagtggtgtatgtttttaatatcatactgt
ttcccctcaatgtccctccttttttcctattttccctttgcaaagcttca
ctgagtgccttgggaccacccacccccatactttcctagcctcactttat
tgtccaaaggatggcatgagatcaaaatccaatggctggctcttccttta
cagcatgggtgccccatgcatatgctcctgaccacgaaactaaattcaga
ctatttcctcaccatgggggaagtagcacagaatgttttacctgtctgca
aataattccatcagatctggcatttctaagatgttctctgatcttagaag
tcccgtgaaagccacttggatagaaatgtactgggcacacaggctgcctt
cttgttatgcagaacatgaaaagacacactaaagccagagcgacacagtt
agcatgccccaaatactgttccttatctctgttcagacagagctgcatta
tttacaaagaaaaagaaagaggagatttctgatgtttgtgttgttcaatg
agtgaagcagcaaagatcagtaactgtaaactattgactaatttgtgcag
tgaaatggac
gaattccacacagtatgttctaagtaatcccttgtgttactgtcttattt
caagataaccctggtaatgtttgtgaggtgagggcccgagtttgacctcc
agaacggatacagaaaagtcaggtgtggtagagcacacttcaaatcacag
cacttggagaggcagagaaagaaagatccccagggccagctatgtggtga
gttacaaggtcagtgaaaaaccctgtctcaaaatgacaagaggggctggc
ttttgagtagtgacatccaagtttcgtgcctggtgtccacatgcaaaatc
catgagaacccacagagacaccgacagaaactggctgcttttcttggact
cataagttttagtgtgattatatattttctgggacaaggtgtttctggag
atgtattgctttgtaccactattccctgagagactcggcgtagagaaaca
atgtcattcaagtgattatttggagttttcaggtcttgtgtgactttaaa
tgcatggttggcggattgttttaaacatggggatttcagaaagagggaaa
tggcttagtggttaccaggacttgttgctcttgcagagggcaagggtttg
atttccagaactcgaggaatggctcccagctgtctatgactctgattcta
ggggatccgataccttcttctgatctctgtgggtgcatgcatgtgaaaca
cgtgaatatatgctggtaaaacattcatacacataaactaaattactcag
gacaggacagggaagtggaggaagaagagtgaaataattctatttcaact
atgttaaaaataagtagaaccaaacaaaaaaaattcaaaaaaaagacaaa
caaaggctaacacaaaatcctcccttaaggagttataatcaagtaaggaa
ggattatcagcactgattttccaatcacccccaatgtcaacattgtagcc
atgttatggaacacagaggcctccatacatgtctaatctgcaagcacgtt
atatttcacatgtatgattgagctgctatttcttgtctttgagtctagaa
attttatgactgttcagacatgtaaataccatttccaacatttctctttc
aaaataaaaataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_45855317_45856500
seq2: B6Ng01-016O08.b_45_1204

seq1  GAATTCCTCCTTCTTTCAGTCTGTCATTTAGATGGTTATTAGTAGTTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCTTCTTTCAGTCTGTCATTTAGATGGTTATTAGTAGTTGCC  50

seq1  AGACAGCTTTTATCAATGTCTCTAATTTACAGAGTCAGACTAAACGCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCTTTTATCAATGTCTCTAATTTACAGAGTCAGACTAAACGCCTT  100

seq1  TTGTTTCTAACTACAACACACAGGGTCTTTATGTTAGACAATTTAAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCTAACTACAACACACAGGGTCTTTATGTTAGACAATTTAAACAA  150

seq1  GCATCAAAGCCTCTGTTGATACTGTCTCTCCTTTTATTCTCCAGTTTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAAAGCCTCTGTTGATACTGTCTCTCCTTTTATTCTCCAGTTTTGC  200

seq1  TAATACAAGGGACAGCCTGTCCTAGTAATTATTACCAGGCTAATGTCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACAAGGGACAGCCTGTCCTAGTAATTATTACCAGGCTAATGTCAGG  250

seq1  TTCAGCTTAGCACATAAAATACCTCTTCAGTGTAGCTTTCTTTGCAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTTAGCACATAAAATACCTCTTCAGTGTAGCTTTCTTTGCAAGAG  300

seq1  ATCAAAACATTTTTTTTAATGGCAACATCAAACAGAATCAACATGTAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAACATTTTTTTTAATGGCAACATCAAACAGAATCAACATGTAAAC  350

seq1  ACGTTTCAATAAAAATTCTTTCCTCTCCAGTGATTTCTTAATATTTGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTCAATAAAAATTCTTTCCTCTCCAGTGATTTCTTAATATTTGGAA  400

seq1  CTCTTTATTAGTTCCCTTTGCTTCCAAATGGTAACACAGCACGCTACTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTATTAGTTCCCTTTGCTTCCAAATGGTAACACAGCACGCTACTTT  450

seq1  TCATACTGTCTTCTGAGACTCTATCACATTTACTAACAGTGAATGTTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACTGTCTTCTGAGACTCTATCACATTTACTAACAGTGAATGTTCTG  500

seq1  TGCTGGTTTTGGTAATGTTCTAGAACTAATCAAGTTTGTCACATGGCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTTTTGGTAATGTTCTAGAACTAATCAAGTTTGTCACATGGCTTG  550

seq1  ACTTTGGAGGTCAGGAAGGAAAGTGGTGTATGTTTTTAATATCATACTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGAGGTCAGGAAGGAAAGTGGTGTATGTTTTTAATATCATACTGT  600

seq1  TTCCCCTCAATGTCCCTCCTTTTTTCCTATTTTCCCTTTGCAAAGCTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTCAATGTCCCTCCTTTTTTCCTATTTTCCCTTTGCAAAGCTTCA  650

seq1  CTGAGTGCCTTGGGACCACCCACCCCCATACTTTCCTAGCCTCACTTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGCCTTGGGACCACCCACCCCCATACTTTCCTAGCCTCACTTTAT  700

seq1  TGTCCAAAGGATGGCATGAGATCAAAATCCAATGGCTGGCTCTTCCTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAAAGGATGGCATGAGATCAAAATCCAATGGCTGGCTCTTCCTTTA  750

seq1  CAGCATGGGTGCCCCATGCATATGCTCCTGACCACGAAACTAAATTCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGGGTGCCCCATGCATATGCTCCTGACCACGAAACTAAATTCAGA  800

seq1  CTATTTCCTCACCATGGGGGAAGTAGCACAGAATGTTTTACCTGTCTGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCCTCACCATGGGGGAAGTAGCACAGAATGTTTTACCTGTCTGCA  850

seq1  AATAATTCCATCAGATCTGGCATTTCTAAGATGTTCTCTGATCCTTAGAA  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AATAATTCCATCAGATCTGGCATTTCTAAGATGTTCTCTGAT-CTTAGAA  899

seq1  GTCCCGTGAAAGCCACTTGGATAGAAATGTACTGGGCACCACAGGCTGCC  950
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTCCCGTGAAAGCCACTTGGATAGAAATGTACTGGGCA-CACAGGCTGCC  948

seq1  TTCTTGTTAATGCAGAACATGAAAAGACACCACTAAAGCCAGGAGCGACA  1000
      |||||||| |||||||||||||||||||| ||||||||||| ||||||||
seq2  TTCTTGTT-ATGCAGAACATGAAAAGACA-CACTAAAGCCA-GAGCGACA  995

seq1  CAAGTAAGCATGCCCCAAATACTGTTCCTTATCTCTGTTCAGACAGAGCT  1050
      | ||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  C-AGTTAGCATGCCCCAAATACTGTTCCTTATCTCTGTTCAGACAGAGCT  1044

seq1  GGCCAATTTAATTACATAGAAAAAGAAAGAGGAGATTTCTGATGTTGTTG  1100
      |  ||  ||| ||||| |||||||||||||||||||||||||||||  ||
seq2  G--CA--TTATTTACAAAGAAAAAGAAAGAGGAGATTTCTGATGTTTGTG  1090

seq1  TTGTTTAAAATGAGGGAAGAGGCAGCAAAAAGATCAGTTACCTGTAAATA  1150
      |||||   |||||| |||   |||||  ||||||||| || ||||||  |
seq2  TTGTT--CAATGAGTGAA---GCAGC--AAAGATCAG-TAACTGTAA--A  1130

seq1  CTAAATGACTAAAATTTGTGCAAGTGAGATGGAC  1184
      || | |||||  ||||||||| ||||| ||||||
seq2  CT-ATTGACT--AATTTGTGC-AGTGAAATGGAC  1160

seq1: chr13_45981646_45982772
seq2: B6Ng01-016O08.g_69_1182 (reverse)

seq1  TTTATTTTTATTTTTTGAAAGAGGAAATTGTTGG-AATGGTAATTTACAT  49
      ||||||||||  |||||||||||  || |||||| |||||| ||||||||
seq2  TTTATTTTTA--TTTTGAAAGAG--AAATGTTGGAAATGGT-ATTTACAT  45

seq1  GTCTGAACAGTCATAAAATTTCCTAGAACTCAAAGAC-AGAAATAGCAGC  98
      ||||||||||||||||||||| |||| |||||||||| ||||||||||||
seq2  GTCTGAACAGTCATAAAATTT-CTAG-ACTCAAAGACAAGAAATAGCAGC  93

seq1  TCAATCAATACATGTGAAATATAAACCGTGCTTGGCAGAATTAAGACATG  148
      |||||| |||||||||||||||||  ||||||| |||||  | |||||||
seq2  TCAATC-ATACATGTGAAATATAA--CGTGCTT-GCAGA--TTAGACATG  137

seq1  TATGGAGGCCCTCTGTGTTCCATAACCATGGCTACAATGTTGACATT-GG  197
      |||||||| |||||||||||||||| ||||||||||||||||||||| ||
seq2  TATGGAGG-CCTCTGTGTTCCATAA-CATGGCTACAATGTTGACATTGGG  185

seq1  GGTGATTGGAAAATCAGTGCTGATAATCCTTCCTTACTTGATTATAAACT  247
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGTGATTGGAAAATCAGTGCTGATAATCCTTCCTTACTTGATTAT-AACT  234

seq1  CCTTAAGGGAGGATTTTGTGTTAGCCTTTGTTTGTCTTTTTTTTGAATTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAGGGAGGATTTTGTGTTAGCCTTTGTTTGTCTTTTTTTTGAATTT  284

seq1  TTTTTGTTTGGTTCTACTTATTTTTAACATAGTTGAAATAGAATTATTTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTGGTTCTACTTATTTTTAACATAGTTGAAATAGAATTATTTC  334

seq1  ACTCTTCTTCCTCCACTTCCCTGTCCTGTCCTGAGTAATTTAGTTTATGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCTTCCTCCACTTCCCTGTCCTGTCCTGAGTAATTTAGTTTATGT  384

seq1  GTATGAATGTTTTACCAGCATATATTCACGTGTTTCACATGCATGCACCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAATGTTTTACCAGCATATATTCACGTGTTTCACATGCATGCACCC  434

seq1  ACAGAGATCAGAAGAAGGTATCGGATCCCCTAGAATCAGAGTCATAGACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGATCAGAAGAAGGTATCGGATCCCCTAGAATCAGAGTCATAGACA  484

seq1  GCTGGGAGCCATTCCTCGAGTTCTGGAAATCAAACCCTTGCCCTCTGCAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGAGCCATTCCTCGAGTTCTGGAAATCAAACCCTTGCCCTCTGCAA  534

seq1  GAGCAACAAGTCCTGGTAACCACTAAGCCATTTCCCTCTTTCTGAAATCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAACAAGTCCTGGTAACCACTAAGCCATTTCCCTCTTTCTGAAATCC  584

seq1  CCATGTTTAAAACAATCCGCCAACCATGCATTTAAAGTCACACAAGACCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTTAAAACAATCCGCCAACCATGCATTTAAAGTCACACAAGACCT  634

seq1  GAAAACTCCAAATAATCACTTGAATGACATTGTTTCTCTACGCCGAGTCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTCCAAATAATCACTTGAATGACATTGTTTCTCTACGCCGAGTCT  684

seq1  CTCAGGGAATAGTGGTACAAAGCAATACATCTCCAGAAACACCTTGTCCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGAATAGTGGTACAAAGCAATACATCTCCAGAAACACCTTGTCCC  734

seq1  AGAAAATATATAATCACACTAAAACTTATGAGTCCAAGAAAAGCAGCCAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATATATAATCACACTAAAACTTATGAGTCCAAGAAAAGCAGCCAG  784

seq1  TTTCTGTCGGTGTCTCTGTGGGTTCTCATGGATTTTGCATGTGGACACCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTCGGTGTCTCTGTGGGTTCTCATGGATTTTGCATGTGGACACCA  834

seq1  GGCACGAAACTTGGATGTCACTACTCAAAAGCCAGCCCCTCTTGTCATTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACGAAACTTGGATGTCACTACTCAAAAGCCAGCCCCTCTTGTCATTT  884

seq1  TGAGACAGGGTTTTTCACTGACCTTGTAACTCACCACATAGCTGGCCCTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAGGGTTTTTCACTGACCTTGTAACTCACCACATAGCTGGCCCTG  934

seq1  GGGATCTTTCTTTCTCTGCCTCTCCAAGTGCTGTGATTTGAAGTGTGCTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCTTTCTTTCTCTGCCTCTCCAAGTGCTGTGATTTGAAGTGTGCTC  984

seq1  TACCACACCTGACTTTTCTGTATCCGTTCTGGAGGTCAAACTCGGGCCCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACACCTGACTTTTCTGTATCCGTTCTGGAGGTCAAACTCGGGCCCT  1034

seq1  CACCTCACAAACATTACCAGGGTTATCTTGAAATAAGACAGTAACACAAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCACAAACATTACCAGGGTTATCTTGAAATAAGACAGTAACACAAG  1084

seq1  GGATTACTTAGAACATACTGTGTGGAATTC  1127
      ||||||||||||||||||||||||||||||
seq2  GGATTACTTAGAACATACTGTGTGGAATTC  1114