BAC Information

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BAC

Clone NameB6Ng01-018M06
Chromosome13 (Build37)
Map Location 12,963,863 - 13,101,372
singlet/doubletdoublet
Overlap geneLOC100039999, LOC100039754, Prl2c2
Upstream geneRyr2, LOC100039678, Mtr, LOC100039826, Actn2, EG432725, Heatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3
Downstream geneLOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1, Lyst, LOC100039831, Gng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2, Tbce
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018M06.bB6Ng01-018M06.g
ACCDH852075DH852076
length1,118445
definitionDH852075|Mus musculus domesticus DNA, BAC clone: B6Ng01-018M06, 5' end.DH852076|Mus musculus domesticus DNA, BAC clone: B6Ng01-018M06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,963,863 - 12,964,992)(13,100,922 - 13,101,372)
sequence
gaattcttttaaagtctttgtaatctcacaaaattgtgccattctccttg
tcctacttttcagtagcatgtgctttttctctttctatgaaacttgattg
tcagaaatatactagatctcttctgaaatatactagaatcattggctgaa
gacatcagaaataagtgagatacttacaaatatcatgttcatttctataa
tgagagccatggtgtcatttgacagtttgatggcttgatcaaacaagtct
ttgaggtatgcctcaccatagtcatcctcattgtggtgaatggaagcaaa
gtcacaccctcccactggagtaggtttgacatcaacaacattgggagtat
tcctactgtatagaaacacaagttacattggattacctatctcaggttat
cagtggtaattcttccttagttataaaaaaaaaaactatttttgcattgc
cagctaccattgggtctgtcactgtacagatgtggtagtgaatatacaat
ttctaataaaaaacttcaattaaataattacattcatacaagtttctaaa
cttgaacacattatctggctctggattagcagaatttattctgaaattat
ggttcttaaattaatgagtgtttttaaatcattctctggagacagattag
tatattggaaatttatgctgatcttaaatagtcactatctcccagacact
cttgttactgaataggcaatatttgcctcatagcaaggacagcagcacac
taccatttcaacttcattcctagcaagaatatagacatgcttgcctgttg
ttcaatactgagggtgaagaggcttttgtcatggaaaggattatgtagcc
tggctttgcctggtcacaataatacacacattcatttgccattctaccaa
atattcagattattttctactgaatttgagcttacaataaccttgtagta
gactgggccagtgtaatacatttaagctatattaacaaagagacacttat
gagattagtgactttccttagtgctattctagttggtgtaggaagaaaaa
gccagcctatagactttgtaccccaatgggagtcctaacccattgggact
ttctatagattaggtaac
ttccttttaattgtctttcgccatctcttttgatatctatttttgccaga
tattaaggaagctacacctgcttgcttctatggtccatttacttggaata
tctttttcaatcctttactctgagataatgtctatcactgatttgagtta
taattctttttttttcccatagaattgtcatgtatggacatatcaatttc
aattttatttattttttcatttttttagatattttcttcacttacatttc
aaatgctatcctaaagtcccccccagaactcccagtgactaagccaccaa
cacttggctccagctgcatatgtagcagaggatgtccttgtcatgcatta
atccttggtcctataaaggctccatagatgtccgagtgtaggggaatcaa
gggcagggaggcgggagtgggtggatggttggaagaacaccctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_12963863_12964992
seq2: B6Ng01-018M06.b_42_1159

seq1  GAATTCTTTTAAAGTCTTTGTAATCTCACAAAATTGTGCCATTCTCCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAAAGTCTTTGTAATCTCACAAAATTGTGCCATTCTCCTTG  50

seq1  TCCTACTTTTCAGTAGCATGTGCTTTTTCTCTTTCTATGAAACTTGATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACTTTTCAGTAGCATGTGCTTTTTCTCTTTCTATGAAACTTGATTG  100

seq1  TCAGAAATATACTAGATCTCTTCTGAAATATACTAGAATCATTGGCTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATATACTAGATCTCTTCTGAAATATACTAGAATCATTGGCTGAA  150

seq1  GACATCAGAAATAAGTGAGATACTTACAAATATCATGTTCATTTCTATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCAGAAATAAGTGAGATACTTACAAATATCATGTTCATTTCTATAA  200

seq1  TGAGAGCCATGGTGTCATTTGACAGTTTGATGGCTTGATCAAACAAGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGCCATGGTGTCATTTGACAGTTTGATGGCTTGATCAAACAAGTCT  250

seq1  TTGAGGTATGCCTCACCATAGTCATCCTCATTGTGGTGAATGGAAGCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTATGCCTCACCATAGTCATCCTCATTGTGGTGAATGGAAGCAAA  300

seq1  GTCACACCCTCCCACTGGAGTAGGTTTGACATCAACAACATTGGGAGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACACCCTCCCACTGGAGTAGGTTTGACATCAACAACATTGGGAGTAT  350

seq1  TCCTACTGTATAGAAACACAAGTTACATTGGATTACCTATCTCAGGTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACTGTATAGAAACACAAGTTACATTGGATTACCTATCTCAGGTTAT  400

seq1  CAGTGGTAATTCTTCCTTAGTTAT-AAAAAAAAAACTATTTTTGCATTGC  449
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CAGTGGTAATTCTTCCTTAGTTATAAAAAAAAAAACTATTTTTGCATTGC  450

seq1  CAGCTACCATTGGGTCTGTCACTGTACAGATGTGGTAGTGAATATACAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTACCATTGGGTCTGTCACTGTACAGATGTGGTAGTGAATATACAAT  500

seq1  TTCTAATAAAAAACTTCAATTAAATAATTACATTCATACAAGTTTCTAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATAAAAAACTTCAATTAAATAATTACATTCATACAAGTTTCTAAA  550

seq1  CTTGAACACATTATCTGGCTCTGGATTAGCAGAATTTATTCTGAAATTAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACACATTATCTGGCTCTGGATTAGCAGAATTTATTCTGAAATTAT  600

seq1  GGTTCTTAAATTAATGAGTGTTTTTAAATCATTCTCTGGAGACAGATTAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTAAATTAATGAGTGTTTTTAAATCATTCTCTGGAGACAGATTAG  650

seq1  TATATTGGAAATTTATGCTGATCTTAAATAGTCACTATCTCCCAGACACT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGGAAATTTATGCTGATCTTAAATAGTCACTATCTCCCAGACACT  700

seq1  CTTGTTACTGAATAGGCAATATTTGCCTCATAGCAAGGACAGCAGCACAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTACTGAATAGGCAATATTTGCCTCATAGCAAGGACAGCAGCACAC  750

seq1  TACCATTTCAACTTCATTCCTAGCAAGAATATAGACATGCTTGCCTGTTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATTTCAACTTCATTCCTAGCAAGAATATAGACATGCTTGCCTGTTG  800

seq1  TTCAATACTGAGGGTGAAGAGGCTTTTGTCATGGAAAGGATTATGTAGCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATACTGAGGGTGAAGAGGCTTTTGTCATGGAAAGGATTATGTAGCC  850

seq1  TGGCTTTGCCTGGTCACAATAATACACACATTCATTTGCCATTCTACCAA  899
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGGCTTTGCCTGGTCACAATAATACACACATTCATTTGCCATTCTACC-A  899

seq1  AATATTCAGATTATTTTCTACTGAATTTGAGCTTACAATAACCTTGTAGG  949
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AATATTCAGATTATTTTCTACTGAATTTGAGCTTACAATAACCTTGTA-G  948

seq1  TAGACTGGGCCAGTGTAATACAATTAAGCTATATTAACAAAAGAGGACAC  999
      |||||||||||||||||||||| ||||||||||||||| ||||| |||||
seq2  TAGACTGGGCCAGTGTAATACATTTAAGCTATATTAAC-AAAGA-GACAC  996

seq1  TTATGAGATTAAGTGACTTTCCTTAAGTGCTATTCTTAGGTGGTGTAGGA  1049
      |||||||||| ||||||||||||| |||||||||| ||| ||||||||||
seq2  TTATGAGATT-AGTGACTTTCCTT-AGTGCTATTC-TAGTTGGTGTAGGA  1043

seq1  AGAAAAAAGCCAGCACTATAGACTTTGTACCCCACAGTGGGATGTCTTAA  1099
      || ||||||||||| |||||||||||||||||  || ||||| ||| |||
seq2  AG-AAAAAGCCAGC-CTATAGACTTTGTACCC--CAATGGGA-GTCCTAA  1088

seq1  CCATATTGGACTTTCATATAGATTAGGTAAC  1130
      ||   | |||||||| |||||||||||||||
seq2  CCCATTGGGACTTTC-TATAGATTAGGTAAC  1118

seq1: chr13_13100922_13101372
seq2: B6Ng01-018M06.g_67_517 (reverse)

seq1  TGAGGGTGTTCTTCCAACCATCCACCCACTCCCGCCTCCCTGCCCTTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTGTTCTTCCAACCATCCACCCACTCCCGCCTCCCTGCCCTTGAT  50

seq1  TCCCCTACACTCGGACATCTATGGAGCCTTTATAGGACCAAGGATTAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTACACTCGGACATCTATGGAGCCTTTATAGGACCAAGGATTAATG  100

seq1  CATGACAAGGACATCCTCTGCTACATATGCAGCTGGAGCCAAGTGTTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACAAGGACATCCTCTGCTACATATGCAGCTGGAGCCAAGTGTTGGT  150

seq1  GGCTTAGTCACTGGGAGTTCTGGGGGGGACTTTAGGATAGCATTTGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAGTCACTGGGAGTTCTGGGGGGGACTTTAGGATAGCATTTGAAAT  200

seq1  GTAAGTGAAGAAAATATCTAAAAAAATGAAAAAATAAATAAAATTGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTGAAGAAAATATCTAAAAAAATGAAAAAATAAATAAAATTGAAAT  250

seq1  TGATATGTCCATACATGACAATTCTATGGGAAAAAAAAAGAATTATAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATGTCCATACATGACAATTCTATGGGAAAAAAAAAGAATTATAACT  300

seq1  CAAATCAGTGATAGACATTATCTCAGAGTAAAGGATTGAAAAAGATATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCAGTGATAGACATTATCTCAGAGTAAAGGATTGAAAAAGATATTC  350

seq1  CAAGTAAATGGACCATAGAAGCAAGCAGGTGTAGCTTCCTTAATATCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAAATGGACCATAGAAGCAAGCAGGTGTAGCTTCCTTAATATCTGG  400

seq1  CAAAAATAGATATCAAAAGAGATGGCGAAAGACAATTAAAAGGAAGAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATAGATATCAAAAGAGATGGCGAAAGACAATTAAAAGGAAGAATT  450

seq1  C  451
      |
seq2  C  451