BAC Information

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BAC

Clone NameB6Ng01-019D11
Chromosome13 (Build37)
Map Location 85,548,429 - 85,694,724
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC382786, LOC100042841, LOC100042851, LOC100042857, LOC100042862, Ccnh, Rasa1
Downstream geneLOC435373, LOC675662, Cox7c, LOC100042887, LOC100042893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019D11.bB6Ng01-019D11.g
ACCDH852374DH852375
length1,0471,060
definitionDH852374|Mus musculus domesticus DNA, BAC clone: B6Ng01-019D11, 5' end.DH852375|Mus musculus domesticus DNA, BAC clone: B6Ng01-019D11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,548,429 - 85,549,176)(85,693,650 - 85,694,724)
sequence
gaattcacctctggtgggctagaaagcaaagatattagagaggaaccagg
gccaaggtatatctttataggctaggttcctagtgatgtacttcctcaag
ctaggccagacttctacaattgctttccagtaacatactaacattaaaaa
tccacaaatggtcatagccctcatgatttactacctcagtgactggactg
attagttgggagacaaagccattagcacatgagcctttttggagattttt
cacacccagatcacaatattctgttcatgtcccctgaaggcttatggtct
gctcacaatgccaagtgcatttagtctgactcttagtgctcctaaagatt
aaataaccctgacattattcaaaagttgaatttcagtctccttagtctct
ttagtctcatattcacttcttagttgtaaaatcaaaaataaggttacctg
tatctgatatatgatggggctgggtagacattttcattttttttaaaaca
tttttaattagatattttctttatttacatttcaaatgttatcccctttc
ctagtttcccctcagaaaatccctcattccctccccctccccccaaccta
cccactcccattcccagtcctggcattcccctattcttgggcatagaacc
ttcacaggacctagggcctctcctcccattgataactgactaggccatcc
tctgctacatatactgctagaaccacatgttccaccatatgttttctttg
attcgtggtttacttccaaggagctcttaggggtactggctagttcatat
tgatattcctcctaatgggctgcaaacctcttcagctccttgcatatttt
ctctggctctttcattggggacctgtgctccgtccaatggataattgtga
gcatccacttctgtatttgtcaggcataagcagaggccctcaggacacag
ctatatcagctcctgtcagcagctctgtggcatcttgccatagtgtctgg
gtttggtgttgtttatggcatggatcccaagtggagcagtccctggg
gaattctgactttagttactaaatattatgtgcacaagacatagcaattt
ttgtcgcagttttccttcattcctaattttatgacagaagttttttagat
ttagttttaattatctgttggttaaatgcaactaattatattcatgtgtc
tgtgtctccatgtcacttttaatcatctctgccttcaccataattgtcca
tatcatctaaaatctcaaatttattatcataatattgttaatagtccttt
catccttttaaagtctataaaatctacaattgtttctgttctatttctga
cactggcaaattattttctttccagttttgttataaaagacatcatcttc
attcattttttaaaaattaaacagcttttaagctcatcaatttaatgttt
ttctactccttacatttctacttttatttttattcttcttttgggctgag
ttttatcttcttaggtttcaatatgcaagtttaagtcaacgtttatttta
ttaactcagttgcataaaactttccctcactttactgtttagctatgtct
catccatttattatttaaatacaactattatttactaagtgaacaaaata
ctaataatgtattatcctcttgactactaccaataactgttatgttcaat
tttgcaataaaaattttggttttaagttgtaaatgtccatcaaatcataa
agcatgcatatatgttaattgatatatgttaattaatgtttgtacagact
agagcacccaatcccaggaaaaatccagtagagaaaacctctcccattaa
tatcaaagtggtgtaacaataatgattctaccatttcttcaaaatgttgg
cttcgtttgctttgagtacagacctaccgcaggattacaaaaccatatgg
cgatagatttcttttttttttcttttgaacagccatactatttccataat
gatgaattatttacagttctaccagtgtatgcagattcatttcactattt
cttggatgtgagaccttagacttttcgtgttacctggcttgctagagaag
tagatttcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_85548429_85549176
seq2: B6Ng01-019D11.b_48_795

seq1  GAATTCACCTCTGGTGGGCTAGAAAGCAAAGATATTAGAGAGGAACCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTCTGGTGGGCTAGAAAGCAAAGATATTAGAGAGGAACCAGG  50

seq1  GCCAAGGTATATCTTTATAGGCTAGGTTCCTAGTGATGTACTTCCTCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGTATATCTTTATAGGCTAGGTTCCTAGTGATGTACTTCCTCAAG  100

seq1  CTAGGCCAGACTTCTACAATTGCTTTCCAGTAACATACTAACATTAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCCAGACTTCTACAATTGCTTTCCAGTAACATACTAACATTAAAAA  150

seq1  TCCACAAATGGTCATAGCCCTCATGATTTACTACCTCAGTGACTGGACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAAATGGTCATAGCCCTCATGATTTACTACCTCAGTGACTGGACTG  200

seq1  ATTAGTTGGGAGACAAAGCCATTAGCACATGAGCCTTTTTGGAGATTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTGGGAGACAAAGCCATTAGCACATGAGCCTTTTTGGAGATTTTT  250

seq1  CACACCCAGATCACAATATTCTGTTCATGTCCCCTGAAGGCTTATGGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCAGATCACAATATTCTGTTCATGTCCCCTGAAGGCTTATGGTCT  300

seq1  GCTCACAATGCCAAGTGCATTTAGTCTGACTCTTAGTGCTCCTAAAGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACAATGCCAAGTGCATTTAGTCTGACTCTTAGTGCTCCTAAAGATT  350

seq1  AAATAACCCTGACATTATTCAAAAGTTGAATTTCAGTCTCCTTAGTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACCCTGACATTATTCAAAAGTTGAATTTCAGTCTCCTTAGTCTCT  400

seq1  TTAGTCTCATATTCACTTCTTAGTTGTAAAATCAAAAATAAGGTTACCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTCATATTCACTTCTTAGTTGTAAAATCAAAAATAAGGTTACCTG  450

seq1  TATCTGATATATGATGGGGCTGGGTAGACATTTTCATTTTTTTTAAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGATATATGATGGGGCTGGGTAGACATTTTCATTTTTTTTAAAACA  500

seq1  TTTTTAATTAGATATTTTCTTTATTTACATTTCAAATGTTATCCCCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATTAGATATTTTCTTTATTTACATTTCAAATGTTATCCCCTTTC  550

seq1  CTAGTTTCCCCTCAGAAAATCCCTCATTCCCTCCCCCTCCCCCCAACCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTCCCCTCAGAAAATCCCTCATTCCCTCCCCCTCCCCCCAACCTA  600

seq1  CCCACTCCCATTCCCAGTCCTGGCATTCCCCTATTCTTGGGCATAGAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCCCATTCCCAGTCCTGGCATTCCCCTATTCTTGGGCATAGAACC  650

seq1  TTCACAGGACCTAGGGCCTCTCCTCCCATTGATAACTGACTAGGCCATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGGACCTAGGGCCTCTCCTCCCATTGATAACTGACTAGGCCATCC  700

seq1  TCTGCTACATATACTGCTAGAACCACATGTTCCACCATATGTTTTCTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTACATATACTGCTAGAACCACATGTTCCACCATATGTTTTCTT  748

seq1: chr13_85693650_85694724
seq2: B6Ng01-019D11.g_70_1129 (reverse)

seq1  ATGAAATACTACTTTCTCTAGCAAGACAGGTAAACACAGAAAAGTCTAAA  50
      ||||||| |||| |||||||||||| ||||| ||||| ||||||||| ||
seq2  ATGAAAT-CTAC-TTCTCTAGCAAGCCAGGT-AACAC-GAAAAGTCT-AA  45

seq1  AGTCTCAAACATTCAAAGAAATAGTGAAAATGAATCTGCATACACTGGTA  100
       |||||| |   || ||||||||||| |||||||||||||||||||||||
seq2  GGTCTCACA---TCCAAGAAATAGTG-AAATGAATCTGCATACACTGGTA  91

seq1  GAACTGTAAAATAATTCAATCATTATGGAAAATAGTATGGCTGTTCAAAA  150
      ||||||| ||||||||| |||||||||| |||||||||||||||||||||
seq2  GAACTGT-AAATAATTC-ATCATTATGG-AAATAGTATGGCTGTTCAAAA  138

seq1  GAAAAAAAAAAAAGAAATCTAATCGCCATATGGTTTTGTAATCCTGCGGT  200
      |  ||||||||||||||||| |||||||||||||||||||||||||||||
seq2  G--AAAAAAAAAAGAAATCT-ATCGCCATATGGTTTTGTAATCCTGCGGT  185

seq1  AGGTCTGTACTCAAAGCAAACGAAGCCAACATTTTGAAGAAATGGTAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGTACTCAAAGCAAACGAAGCCAACATTTTGAAGAAATGGTAGAA  235

seq1  TCATTATTGTTACACCACTTTGATATTAATGGGAGAGGTTTTCTCTACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATTGTTACACCACTTTGATATTAATGGGAGAGGTTTTCTCTACTG  285

seq1  GATTTTTCCTGGGATTGGGTGCTCTAGTCTGTACAAACATTAATTAACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTCCTGGGATTGGGTGCTCTAGTCTGTACAAACATTAATTAACAT  335

seq1  ATATCAATTAACATATATGCATGCTTTATGATTTGATGGACATTTACAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAATTAACATATATGCATGCTTTATGATTTGATGGACATTTACAAC  385

seq1  TTAAAACCAAAATTTTTATTGCAAAATTGAACATAACAGTTATTGGTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACCAAAATTTTTATTGCAAAATTGAACATAACAGTTATTGGTAGT  435

seq1  AGTCAAGAGGATAATACATTATTAGTATTTTGTTCACTTAGTAAATAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGAGGATAATACATTATTAGTATTTTGTTCACTTAGTAAATAATA  485

seq1  GTTGTATTTAAATAATAAATGGATGAGACATAGCTAAACAGTAAAGTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTATTTAAATAATAAATGGATGAGACATAGCTAAACAGTAAAGTGAG  535

seq1  GGAAAGTTTTATGCAACTGAGTTAATAAAATAAACGTTGACTTAAACTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTTTTATGCAACTGAGTTAATAAAATAAACGTTGACTTAAACTTG  585

seq1  CATATTGAAACCTAAGAAGATAAAACTCAGCCCAAAAGAAGAATAAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGAAACCTAAGAAGATAAAACTCAGCCCAAAAGAAGAATAAAAAT  635

seq1  AAAAGTAGAAATGTAAGGAGTAGAAAAACATTAAATTGATGAGCTTAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAGAAATGTAAGGAGTAGAAAAACATTAAATTGATGAGCTTAAAA  685

seq1  GCTGTTTAATTTTTAAAAAATGAATGAAGATGATGTCTTTTATAACAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTAATTTTTAAAAAATGAATGAAGATGATGTCTTTTATAACAAAA  735

seq1  CTGGAAAGAAAATAATTTGCCAGTGTCAGAAATAGAACAGAAACAATTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAGAAAATAATTTGCCAGTGTCAGAAATAGAACAGAAACAATTGT  785

seq1  AGATTTTATAGACTTTAAAAGGATGAAAGGACTATTAACAATATTATGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTATAGACTTTAAAAGGATGAAAGGACTATTAACAATATTATGAT  835

seq1  AATAAATTTGAGATTTTAGATGATATGGACAATTATGGTGAAGGCAGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTTGAGATTTTAGATGATATGGACAATTATGGTGAAGGCAGAGA  885

seq1  TGATTAAAAGTGACATGGAGACACAGACACATGAATATAATTAGTTGCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAAAAGTGACATGGAGACACAGACACATGAATATAATTAGTTGCAT  935

seq1  TTAACCAACAGATAATTAAAACTAAATCTAAAAAACTTCTGTCATAAAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCAACAGATAATTAAAACTAAATCTAAAAAACTTCTGTCATAAAAT  985

seq1  TAGGAATGAAGGAAAACTGCGACAAAAATTGCTATGTCTTGTGCACATAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATGAAGGAAAACTGCGACAAAAATTGCTATGTCTTGTGCACATAA  1035

seq1  TATTTAGTAACTAAAGTCAGAATTC  1075
      |||||||||||||||||||||||||
seq2  TATTTAGTAACTAAAGTCAGAATTC  1060