BAC Information

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BAC

Clone NameB6Ng01-019J19
Chromosome13 (Build37)
Map Location 22,804,361 - 22,805,104
singlet/doubletsinglet
Overlap genenone
Upstream geneHist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740
Downstream geneLOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019J19.bB6Ng01-019J19.g
ACCDH852651DH852652
length9631,065
definitionDH852651|Mus musculus domesticus DNA, BAC clone: B6Ng01-019J19, 5' end.DH852652|Mus musculus domesticus DNA, BAC clone: B6Ng01-019J19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgtaccccatttttcaaaggggttatttgatt
ttctggagtccaccttcttgagttctttgtatatattagatattactccc
ctatgggatttatgattggtaaaaatccgttcctagtaggttggtggcat
ttttgtcttattgacagtgtcttttgcattacataagctttgcaaattta
tggggtccccttggtcacttctcaatcttgcagcacaagccattggtgtt
ctgttctgtaatttttcctcagttccatatcttcgaggctttcccccact
ttctttgttttctaattaggtatttttattttattaggtttttttttatt
tattaggtattttcttcatttacatttccagtgccatcccaaaagtcccc
cataccctaccccccaatccactacccaccaactatcacttcttggccct
ggtgttcccctgtactgaggcatataaagtttgcaagaccaatgggcctc
tctttccaatgagtgctgactaggacatgttctgatacatatgcagctag
agacacgagctctggggtttactggttagttcatattgttgttctaccta
tagggttgtagacccctttagctcattgggtactttctctagctcctcca
ttgggttccctgtgatccatccaataactgactgtgagcatccacttatg
tgttttgctaggcccctgcatagcctcagaagagacagctatacctgggt
ccttttcaataaaatcttgctggtgtatgcaatggtatcagcatttggag
gttgattatgggatggatccctgggtatggcagtctctaaatagttcatc
ctttcatctcagatccaaactttgtctctgtactcctttcatgggtgttt
gttcccattctagaggggcaagtgtccaacttggtgttcgtccttttgag
tttcatgtgtttg
gaattcatgtgtttctggactcttttttttattgttagcactattttaat
gactacttctatttgagtaggacttttaggtatgtttaaattgtttactt
gatgttaatttgattttggaaagttataattatcaagaaattcaacgact
tcttaaacgttgtaatgtttgttggaattcaaatgtttatagtgtgtcct
tataattctgtggattttgttggtctattccaatgtctgttttcacttat
aatttttgaagttggatatttttcttcttttggttaatctagctaagaat
ttgctagtcttgatgttttgaaaagtcaactctgtatgttttgttgttgg
atctgttttgtcttctaatccatctgcctggctcttgtcggtatcatagg
acatggatattgtcacaacccttagctgcagcagaaccacagacccaggc
atagccctcaccagcatccctgacaggaattcatcaaagccttgggtagc
agcttaggccacccagatcaatttagtccccagtgtcagtacaggcttca
gtcatcaacatggtctcatgcagcagcccagacccaatgacaccctggtg
gctttcaatagcagaatgggccatagacaccaatacaaaaacccagctgc
agaagggtcacagacccagacagcagcccagacttagatatcgccttaga
cccaggtggttgcacagattcctgttgctgtgcctgttcctcagcactgc
tgagtctccagatccacctccctctacagtgtcggaaacactcagctttg
ctttatttcccatctctgcaccacatactccatgttttccttctctctac
aacatattcattcatctcatcatattgatatctgctcttacatgggactg
gcacttaggtgtctttcttccagtccctgttcttcactctaggtgactgt
gaatgttaggatgctcagagcttagtttactatggctttactgaaaacat
ctgccaaagaatggatagaatttgtttccacagcagtcgagtccttcaat
gtatttgtttaacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_22804361_22805104
seq2: B6Ng01-019J19.g_398_1132

seq1  TCTGTATGTTTTGTTGTTGGATCTGTTTTGTCTTCTAATCCATCTGCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATGTTTTGTTGTTGGATCTGTTTTGTCTTCTAATCCATCTGCCTG  50

seq1  GCTCTTGTCGGTATCATAGGACATGGATATTGTCACAACCCTTAGCTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGTCGGTATCATAGGACATGGATATTGTCACAACCCTTAGCTGCA  100

seq1  GCAGAACCACAGACCCAGGCATAGCCCTCACCAGCATCCCTGACAGGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAACCACAGACCCAGGCATAGCCCTCACCAGCATCCCTGACAGGAAT  150

seq1  TCATCAAAGCCTTGGGTAGCAGCTTAGGCCACCCAGATCAATTTAGTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAAAGCCTTGGGTAGCAGCTTAGGCCACCCAGATCAATTTAGTCCC  200

seq1  CAGTGTCAGTACAGGCTTCAGTCATCAACATGGTCTCATGCAGCAGCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCAGTACAGGCTTCAGTCATCAACATGGTCTCATGCAGCAGCCCA  250

seq1  GACCCAATGACACCCTGGTGGCTTTCAATAGCAGAATGGGCCATAGACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAATGACACCCTGGTGGCTTTCAATAGCAGAATGGGCCATAGACAC  300

seq1  CAATACAAAAACCCAGCTGCAGAAGGGTCACAGACCCAGACAGCAGCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACAAAAACCCAGCTGCAGAAGGGTCACAGACCCAGACAGCAGCCCA  350

seq1  GACTTAGATATCGCCTTAGACCCAGGTGGTTGCACAGATTCCTGTTGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAGATATCGCCTTAGACCCAGGTGGTTGCACAGATTCCTGTTGCTG  400

seq1  TGCCTGTTCCTCAGCACTGCTGAGTCTCCAGATCCACCTCCCTCTACAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTTCCTCAGCACTGCTGAGTCTCCAGATCCACCTCCCTCTACAGT  450

seq1  GTCGGAAACACTCAGCTTTGCTTTATTTCCCATCTCTGCACCACATACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGAAACACTCAGCTTTGCTTTATTTCCCATCTCTGCACCACATACTC  500

seq1  CATGTTTTCCTTCTCTCTACAACATATTCATTCATCTCATCATATTGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTTCCTTCTCTCTACAACATATTCATTCATCTCATCATATTGATA  550

seq1  TCTGCTCTTACATGGGACTGGCACTTAGGTGTCTTTCTTCCAGTCCCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCTTACATGGGACTGGCACTTAGGTGTCTTTCTTCCAGTCCCTGT  600

seq1  TCTTCACTCTAGGTGACTGTGAATGTTAGGTATGCTCAGAGCTTTAGTTT  650
      |||||||||||||||||||||||||||||| ||||||||||| |||||||
seq2  TCTTCACTCTAGGTGACTGTGAATGTTAGG-ATGCTCAGAGC-TTAGTTT  648

seq1  ACTATGGCTTTACTGAAAATCATCTGCCATAGTAATGGAATGAGATTTTG  700
      ||||||||||||||||||| ||||||||| || ||||||   ||| ||||
seq2  ACTATGGCTTTACTGAAAA-CATCTGCCAAAG-AATGGA--TAGAATTTG  694

seq1  TTTCACACAGAAGTCAGAGTCCCTTCAAATGTATTTG-TTAACAA  744
      |||| ||||| |||| |||| ||||| |||||||||| |||||||
seq2  TTTC-CACAGCAGTC-GAGT-CCTTC-AATGTATTTGTTTAACAA  735