BAC Information

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BAC

Clone NameB6Ng01-019J23
Chromosome13 (Build37)X (Build37)
Map Location 62,583,862 - 62,584,112106,304,846 - 106,305,297
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG624056, LOC665717, Ctsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik
Downstream geneLOC100041455, 6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik, Fancc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019J23.bB6Ng01-019J23.g
ACCDH852659DH852660
length815446
definitionDH852659|Mus musculus domesticus DNA, BAC clone: B6Ng01-019J23, 5' end.DH852660|Mus musculus domesticus DNA, BAC clone: B6Ng01-019J23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(62,583,862 - 62,584,112)(106,304,846 - 106,305,297)
sequence
gaattctctatatagccaattcacaatacttttgtctcagcccccaagta
atgggataacagttgctacaatgctcagcttgtaaatatgattttgagtt
ctgaaagacgagcacttttgtggatgaaggaaaagaagatgaggcagcag
agatggcccacacttcaagctcactatgtgtgtcattgaagtcctgatct
tcctgcctctagcccaacaagggctatgattacaagcataaaccatcaag
acagcaaattagattgaaaataagtccactttttaggaagtgaggtacca
tttgaaaacatgagaacctaaaatataatttccttgtaaacttccctgtc
agaagttccatttaccatcatcctttttacctacagtttatttttttatt
acatattttcctcaattacatttccaatggtatcccaaaagtcccccata
ccctccccccccatttccctaccaactcattcccattttttttttttttt
ggccctggcgttcccctgtactggggcatataaagtttgcatgtccaatg
gtcctctctttccagtgatggccgactaggccatcttttgatacatatgc
agctagagtcaagagctctgaggtactggttagttcataatgttgttcca
tctatagggttgcagatccctttagctccttgggtactttctctagctcc
tccattgggagccctgtgatccatccaatagctgactgtgagcatccact
tctgtgtttgctaggccccagcatagtctcacaagagacagctacatctg
ggttctttcgataaa
acagtgtgagtggttccagtggcaatcttagagacagaggcagatggaag
ggaatgaaaggaagtttgaagccagcccagtttgtatagctgaattccag
tacatacagggctacctagcaagtctgtcttaaaaaaccaaacataattt
ttaagatgttaaaagagtactgattatgttccagagcactcttttgggaa
gctccaaattcagtaccccctcgccacccccagttcttgaatgaaggaaa
aataagaatgcacattgatttgtgtttcgttgaatgtgtttgattcaaag
tttgtgtcctaagggaattatactttaggaaaggaaaatggcactaaagt
aattatatagaatcataaaagtgaagaaggcaaaagaagaaggaagaagg
gggatagaaggacagagagtgaggggaggaaggaaagaaggaagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_62583862_62584112
seq2: B6Ng01-019J23.b_438_696 (reverse)

seq1  TGGAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCT  50
      ||||||||||||||||||||||||||||| | ||||||||||||||||||
seq2  TGGAACAACATTATGAACTAACCAGTACCTCAGAGCTCTTGACTCTAGCT  50

seq1  GCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCC  100
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGAC  100

seq1  CATTGGACACGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCC  150
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCC  150

seq1  ---------ATAAAAGGCGAGTGGGTGGGTAGGGGAGTGGGGGTGGGTGG  191
               | |||| | || || || ||||||| | |||||| ||| ||
seq2  AAAAAAAAAAAAAAATGGGAATGAGTTGGTAGGGAAATGGGGG-GGGAGG  199

seq1  CTATGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACC  241
       |||||||||||||||| ||| |||||||||||||| ||||  |||||  
seq2  GTATGGGGGACTTTTGGGATACCATTGGAAATGTAATTGAGGAAAATATG  249

seq1  TAATAAAAAA  251
      ||||||||||
seq2  TAATAAAAAA  259

seq1: chrX_106304846_106305297
seq2: B6Ng01-019J23.g_69_520

seq1  GAATTCACAGTGTGAGTGGTTCCAGTGGCAATCTTAGAGACAGAGGCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTGTGAGTGGTTCCAGTGGCAATCTTAGAGACAGAGGCAGA  50

seq1  TGGAAGGGAATGAAAGGAAGTTTGAAGCCAGCCCAGTTTGTATAGCTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGGAATGAAAGGAAGTTTGAAGCCAGCCCAGTTTGTATAGCTGAA  100

seq1  TTCCAGTACATACAGGGCTACCTAGCAAGTCTGTCTTAAAAAACCAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTACATACAGGGCTACCTAGCAAGTCTGTCTTAAAAAACCAAACA  150

seq1  TAATTTTTAAGATGTTAAAAGAGTACTGATTATGTTCCAGAGCACTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTAAGATGTTAAAAGAGTACTGATTATGTTCCAGAGCACTCTTT  200

seq1  TGGGAAGCTCCAAATTCAGTACCCCCTCGCCACCCCCAGTTCTTGAATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGCTCCAAATTCAGTACCCCCTCGCCACCCCCAGTTCTTGAATGA  250

seq1  AGGAAAAATAAGAATGCACATTGATTTGTGTTTCGTTGAATGTGTTTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAATAAGAATGCACATTGATTTGTGTTTCGTTGAATGTGTTTGAT  300

seq1  TCAAAGTTTGTGTCCTAAGGGAATTATACTTTAGGAAAGGAAAATGGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTTTGTGTCCTAAGGGAATTATACTTTAGGAAAGGAAAATGGCAC  350

seq1  TAAAGTAATTATATAGAATCATAAAAGTGAAGAAGGCAAAAGAAGAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTAATTATATAGAATCATAAAAGTGAAGAAGGCAAAAGAAGAAGGA  400

seq1  AGAAGGGGGATAGAAGGACAGAGAGTGAGGGGAGGAAGGAAAGAAGGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGGGATAGAAGGACAGAGAGTGAGGGGAGGAAGGAAAGAAGGAAG  450

seq1  GA  452
      ||
seq2  GA  452