BAC Information

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BAC

Clone NameB6Ng01-019K04
Chromosome13 (Build37)
Map Location 27,814,511 - 27,934,614
singlet/doubletdoublet
Overlap genePrl7c1, Prl2a1
Upstream geneHdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1
Downstream geneOTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1, LOC100042388, LOC100042393, LOC100042399, Ppia-ps13_297.1, LOC626683
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019K04.bB6Ng01-019K04.g
ACCDH852669DH852670
length1,193819
definitionDH852669|Mus musculus domesticus DNA, BAC clone: B6Ng01-019K04, 5' end.DH852670|Mus musculus domesticus DNA, BAC clone: B6Ng01-019K04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,814,511 - 27,815,178)(27,933,311 - 27,934,614)
sequence
gaattcaaccagacattcaaggaagacctaacatctatactcctcacatt
acaccacaaaatagaaacagagggaccattgttaaattcattatgtgccc
acattcaccctcacaggtaaaccacacaaagattcaataaaggaaaaaat
tatagaacaatttctctcatgaaccttgatgcaaaagtactcaacaaaat
acttgtcaacagaatctaagaacatatcaataaaatcattcactatgatc
cagtaggtttcatcccatttccagagatggttcaacatatacatctgaca
gaggtcaaatttccaagatacatgaagaactcaagaaactagacatcaac
aaaataaataattcaattaaaaatggggtacagatgcaaacagaattctc
aacagagggatctcaaatggttgaggaataatatttaacatatggaagtt
taagtcaagactcctttcaggttccatactatacctgtcagaattacgaa
aataaaacaaacaaaacaaaaacaaacaacaccaaaagacaaaacaagta
ataactcatgttggtgaggatgtggaacaagtggaacactactacattgc
tcatggaagttcaaacttgtacagccactatggaagttaatatggtagtt
tctctgaaaattggaaattgatctacctcaatacccagccataccactcc
aagacatatactcaaaggatcctcccatcataaggacacattctaaacta
tgtttatagcagctttattcatacaagccagaaattagaaacaatctaga
tatacctcaactgaagaactgataaaatatggtccatttacacaatggag
tattaccctgctgttaacaataataacatcatgaatttacatgcaagtgg
atggatcttgagaatagcatcacagaaagatcaacatgttctgtggttat
tggctataagtaaatgacaacatgttacagtccatagaccaagaaggcta
agtaacaagaaggtcagaaagaaaaacacgaggatcttcctggtgataga
cctaaggtggaggaccagttacagtattaaacaagaaccaagttcttgtg
gtgaaacgtcggccagctgcagctgctggggagtcaccagtcctgataca
tacttttctgcactatgtaatatcccttcctagcaccctcccc
gaattcctgtatatgtgaatgtatgtctccatgtctatacatgtttcatg
tactttgttcttgtttgcctgttttatcttattccaatttatcttatttt
attatgttattttatttcatttatttatttttattcctgaaattcctgtt
tgttttctaaggagagaaagaaagagtgtggagctagatgggagtgaata
ttgggaagaattggaaggattatgggaaagggaaaaataattcaaatata
ttatatgaaaaagagcatctgctgtgacaggtgagaatggtcctgtcctc
cattaagcctaactagagttcctctgaaatgattcattccattgtctatg
tgtactccacccagagaaggaagtcaaatgaactgtgagaatgacagttg
ctagggaaacctaaatacgttaattcataacattcattcaggtacttgaa
ggaaataactgatgtagcaatgggacctgttttcttttgactataactca
ttttgtttttgtttacttttaatcttcttgagttatgaacaccaatataa
actcacatcactcacatttgtttggaggataatttggagtattcattgac
ctggcctatcctctgcaaacttccattatgttatgctaacagctacacat
ttacagatagagtcccaaaatcacatataaaaaacaaagatgtagaagat
ggggacttgcaagaagatactatacatgaatagaaaaatcacagcaaaac
catgaaaggattcaggaaatatttgcaagagagtttatctttgttttagt
taaatcttactgggaatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_27814511_27815178
seq2: B6Ng01-019K04.b_571_1234

seq1  CACCAAAAGACAAAACAAGTAATAACTCATGTTGGTGAGGATGTGGAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAAAGACAAAACAAGTAATAACTCATGTTGGTGAGGATGTGGAACA  50

seq1  AGTGGAACACTACTACATTGCTCATGGAAGTTCAAACTTGTACAGCCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAACACTACTACATTGCTCATGGAAGTTCAAACTTGTACAGCCACT  100

seq1  ATGGAAGTTAATATGGTAGTTTCTCTGAAAATTGGAAATTGATCTACCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGTTAATATGGTAGTTTCTCTGAAAATTGGAAATTGATCTACCTC  150

seq1  AATACCCAGCCATACCACTCCAAGACATATACTCAAAGGATCCTCCCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCCAGCCATACCACTCCAAGACATATACTCAAAGGATCCTCCCATC  200

seq1  ATAAGGACACATTCTAAACTATGTTTATAGCAGCTTTATTCATACAAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGACACATTCTAAACTATGTTTATAGCAGCTTTATTCATACAAGCC  250

seq1  AGAAATTAGAAACAATCTAGATATACCTCAACTGAAGAACTGATAAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTAGAAACAATCTAGATATACCTCAACTGAAGAACTGATAAAATA  300

seq1  TGGTCCATTTACACAATGGAGTATTACCCTGCTGTTAACAATAATAACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCATTTACACAATGGAGTATTACCCTGCTGTTAACAATAATAACAT  350

seq1  CATGAATTTACATGCAAGTGGATGGATCTTGAGAATAGCATCACAGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATTTACATGCAAGTGGATGGATCTTGAGAATAGCATCACAGAAAG  400

seq1  ATCAACATGTTCTGTGGTTATTGGCTATAAGTAAATGACAAACATGTTAC  450
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATCAACATGTTCTGTGGTTATTGGCTATAAGTAAATGAC-AACATGTTAC  449

seq1  AGTCCATAGACCAAGAAAGGCTAAGTAACAAGAAGGTCAGAAAGAGAAAC  500
      ||||||||||||||| ||||||||||||||||||||||||||||| ||||
seq2  AGTCCATAGACCAAG-AAGGCTAAGTAACAAGAAGGTCAGAAAGAAAAAC  498

seq1  ACGAGGATCTTCCTGGTGATAGACCTAA-GTGGAGGACCAGTAACAAGTA  549
      |||||||||||||||||||||||||||| ||||||||||||| || ||||
seq2  ACGAGGATCTTCCTGGTGATAGACCTAAGGTGGAGGACCAGTTAC-AGTA  547

seq1  TTAAACAAAGAACCAAGTCCTTGT-GTGAAACGTCCGGCCAGCTGCAGCT  598
      |||||| ||||||||||| ||||| ||||||||| |||||||||||||||
seq2  TTAAAC-AAGAACCAAGTTCTTGTGGTGAAACGT-CGGCCAGCTGCAGCT  595

seq1  GCT-GGGAGTCACCAGTCCTGATACATACTTTTCTGCACTTAGTAGATAT  647
      ||| ||||||||||||||||||||||||||||||||||||  ||| ||||
seq2  GCTGGGGAGTCACCAGTCCTGATACATACTTTTCTGCACTATGTA-ATAT  644

seq1  CACTTCCTAGCAACCCTCCCC  668
      | ||||||||| |||||||||
seq2  CCCTTCCTAGC-ACCCTCCCC  664

seq1: chr13_27933311_27934614
seq2: B6Ng01-019K04.g_65_883 (reverse)

seq1  TCATTCCCAATTCTTTCTTCCCTCCAAGATCCCTTGTTCAAAACCATCAC  50
                                                        
seq2  --------------------------------------------------  0

seq1  ATGTGACTCCACTTTGAAGATGAAAGACTCTTTTTCTTTGATTATATTTG  100
                                                        
seq2  --------------------------------------------------  0

seq1  TATGTATGCCCAAATGCACACACACACACACACACACACACAACCTGCGG  150
                                                        
seq2  --------------------------------------------------  0

seq1  AGATTATTTTTTGTAAAGTGCATATATCCTGTATCTATGGCTCAAAGGAC  200
                                                        
seq2  --------------------------------------------------  0

seq1  ATTGCAGAAGAGGAAATGAAAATACTCAAAAGGCTAGAATTTCAGAAAGT  250
                                                        
seq2  --------------------------------------------------  0

seq1  CTGCTGTGATATAGTCTCTTAGAAATGGATTCATGAACAAATACAGAGCA  300
                                                        
seq2  --------------------------------------------------  0

seq1  ATAGTGTCCATTCCCATGTTGACATGAAATGGGGCTAGGTGGATTTCACC  350
                                                        
seq2  --------------------------------------------------  0

seq1  GCATCACATCAACAGAGAGCTGTAAGTACCTGTGAGTGCGGGGAGAATGA  400
                                                        
seq2  --------------------------------------------------  0

seq1  GAGTTAGATTCTCCCAGGGATGAAACTCTTTTTAGCTGTCTATTGCACAA  450
                                                        
seq2  --------------------------------------------------  0

seq1  AGATTAGCTTATAATCATTTGTATTTTTAGATTATCATTACCAGTAAGAT  500
                                        ||||| ||||||||||
seq2  ----------------------------------TCATTCCCAGTAAGAT  16

seq1  TTAACTTAATACAAAGATAAACTCTCTTGCAAATATTTCCTGAATCCTTT  550
      ||||| ||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTAAC-TAAAACAAAGATAAACTCTCTTGCAAATATTTCCTGAATCCTTT  65

seq1  CATGGTTTTGCTGTGATTTTTCTATTCATGTATAGTATCTTCTTGCAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTTTGCTGTGATTTTTCTATTCATGTATAGTATCTTCTTGCAAGT  115

seq1  CCCCATCTTCTACATTCTTTG-TTTTTATATGTGATTTTGGGACTCTATC  649
      |||||||||||||| |||||| ||||||||||||||||||||||||||||
seq2  CCCCATCTTCTACA-TCTTTGTTTTTTATATGTGATTTTGGGACTCTATC  164

seq1  TGTAAATGTGTAGCTGTTAGCATAACATAATGGAAGTTTGCAGAGGATAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATGTGTAGCTGTTAGCATAACATAATGGAAGTTTGCAGAGGATAG  214

seq1  GCCAGGTCAATGAATACTCCAAATTATCCTCCAAACAAATGTGAGTGATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGTCAATGAATACTCCAAATTATCCTCCAAACAAATGTGAGTGATG  264

seq1  TGAGTTTATATTGGTGTTCATAACTCAAGAAGATTAAAAGTAAACAAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTATATTGGTGTTCATAACTCAAGAAGATTAAAAGTAAACAAAAA  314

seq1  CAAAATGAGTTATAGTCAAAAGAAAACAGGTCCCATTGCTACATCAGTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGAGTTATAGTCAAAAGAAAACAGGTCCCATTGCTACATCAGTTA  364

seq1  TTTCCTTCAAGTACCTGAATGAATGTTATGAATTAACGTATTTAGGTTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCAAGTACCTGAATGAATGTTATGAATTAACGTATTTAGGTTTC  414

seq1  CCTAGCAACTGTCATTCTCACAGTTCATTTGACTTCCTTCTCTGGGTGGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCAACTGTCATTCTCACAGTTCATTTGACTTCCTTCTCTGGGTGGA  464

seq1  GTACACATAGACAATGGAATGAATCATTTCAGAGGAACTCTAGTTAGGCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACATAGACAATGGAATGAATCATTTCAGAGGAACTCTAGTTAGGCT  514

seq1  TAATGGAGGACAGGACCATTCTCACCTGTCACAGCAGATGCTCTTTTTCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGAGGACAGGACCATTCTCACCTGTCACAGCAGATGCTCTTTTTCA  564

seq1  TATAATATATTTGAATTATTTTTCCCTTTCCCATAATCCTTCCAATTCTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATATATTTGAATTATTTTTCCCTTTCCCATAATCCTTCCAATTCTT  614

seq1  CCCAATATTCACTCCCATCTAGCTCCACACTCTTTCTTTCTCTCCTTAGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATATTCACTCCCATCTAGCTCCACACTCTTTCTTTCTCTCCTTAGA  664

seq1  AAACAAACAGGAATTTCAGGAATAAAAATAAATAAATGAAATAAAATAAC  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAGGAATTTCAGGAATAAAAATAAATAAATGAAATAAAATAAC  714

seq1  ATAATAAAATAAGATAAATTGGAATAAGATAAAACAGGCAAACAAGAACA  1249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAAATAAGATAAATTGGAATAAGATAAAACAGGCAAACAAGAACA  764

seq1  AAGTACATGAAACATGTATAGACATGGAGACATACATTCACATATACAGG  1299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACATGAAACATGTATAGACATGGAGACATACATTCACATATACAGG  814

seq1  AATTC  1304
      |||||
seq2  AATTC  819