BAC Information

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BAC

Clone NameB6Ng01-019K21
Chromosome13 (Build37)
Map Location 21,335,596 - 21,482,219
singlet/doubletdoublet
Overlap geneGpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3
Upstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27
Downstream genePgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019K21.bB6Ng01-019K21.g
ACCDH852702DH852703
length9511,017
definitionDH852702|Mus musculus domesticus DNA, BAC clone: B6Ng01-019K21, 5' end.DH852703|Mus musculus domesticus DNA, BAC clone: B6Ng01-019K21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,481,661 - 21,482,219)(21,335,596 - 21,336,610)
sequence
gaattcctttcagaattgccctgttttctgttgcttcctgtgttcggtct
ttcttacatctgttctagtttcttttctgttgctgtaataaatactatat
gacccaaatgctatgactgcttgagggagtaaagggtttatttttatccc
atagtctttgattgaaggaagtccttgcatgaactcatacaggaacctga
gggcacagactgaagcagaggccactgagaaatgctaactggcctgctcc
actgtggggtggggtgctttcagacccttatcctagctccctggaagcca
gtattctgctagcagccttcagatgaacatgtagaactctcagctcctcc
tacaccatgcctgcctgaatgctgccatgttcctgacttgataatggact
gaacctctgaacctgtaagacagccccaattaaatgttgtccttatagga
gctgccttggtccttcgtgcctcagtagctcttctgccttggtgtctgtt
cacagcagtaaaaccctaagacactacctgactttcttctacaatcagga
ctacctgaccagggatggcaccactgataatatgctgggtcctcccacat
cagtgattaaacaagaaaatgccccccacagacttgccacagacctacca
aatggaagagattcctcagttgagatacccttatagtttgtgtcaaattg
acaaaaagtcactagcataatttagttgactcttgtcaaatacatccatt
attaaaccataacctttcctttcttgtttatacccaaggccttatgttaa
tactccaacctaaacagcataattttataaacgtcaaagtcttttaaaaa
aaaactcaacattttaaatttagaatctctttaacttttggttcctgtgc
agttaagaccaagtcaagggctagagagatggttcagaagtcaagcacac
t
gaattctataaaagtctttttcttgtctttctgcctttttcttctcggtg
tcttaataataatcagacatgagcacacagaggaacatgacttctagttg
tcctgcttcctgcttacaaggtaacccagagcgaaggttgctccaccaca
accccttttggcatgattgtgtacagagactggttcggcatgaagtaaaa
ctggtgtttgtttttctcagtttatagagtagagcaagtcttaagtgagt
gtgtaagaagcaaatgaggtcccgaggtcccgatcctacttggattgttt
gaccctgggagggcatgcggaggaccaaggcttcaactccacaggagtgg
caaagattcccccttataggtaaggcttaggagcatggcaaagccttccc
tagtcctagtgcaaatgttgacagtgtgcagatacaggtgttacgactga
ccacaatgtgtgcaaaatttagcagatgcagtttccttctccaggatgtt
tacagccagagactcattacctacagtctagtagctaactcttccccctg
tgctgtatgtaataaactcattgaggttcctggttgttgagaagtaggcg
agttcgaccaaagcaagcccagcctaggggatccccgtttttctgtccac
gtgtctgtgtgtctttacttccttgatcaggttgagtcccagccactcag
gaattgatatctcaactcatctgtgtctaagttccccaagacatcttttc
tggttctgttcttttgcactggtcgcttagcagttctgaaggactgaaag
ccagaagctgtggtgtgtgtgtggggacattggtgtgactgtatggaatt
ctgcagctcaacaaaaactggggattaccaggagctccactggacttggc
attgtctatgctgaggcctcaagattcaaggcattcagttattctctttt
cttgggacagattgtccatcagaaatggttcctctgggactactatgggt
tctttttgagtcttaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_21481661_21482219
seq2: B6Ng01-019K21.b_47_605 (reverse)

seq1  GTCAGGTAGTCCTGATTGTAGAAGAAAGTCAGGTAGTGTCTTAGGGTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGTAGTCCTGATTGTAGAAGAAAGTCAGGTAGTGTCTTAGGGTTTT  50

seq1  ACTGCTGTGAACAGACACCAAGGCAGAAGAGCTACTGAGGCACGAAGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGTGAACAGACACCAAGGCAGAAGAGCTACTGAGGCACGAAGGAC  100

seq1  CAAGGCAGCTCCTATAAGGACAACATTTAATTGGGGCTGTCTTACAGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCAGCTCCTATAAGGACAACATTTAATTGGGGCTGTCTTACAGGTT  150

seq1  CAGAGGTTCAGTCCATTATCAAGTCAGGAACATGGCAGCATTCAGGCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTTCAGTCCATTATCAAGTCAGGAACATGGCAGCATTCAGGCAGG  200

seq1  CATGGTGTAGGAGGAGCTGAGAGTTCTACATGTTCATCTGAAGGCTGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGTAGGAGGAGCTGAGAGTTCTACATGTTCATCTGAAGGCTGCTA  250

seq1  GCAGAATACTGGCTTCCAGGGAGCTAGGATAAGGGTCTGAAAGCACCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATACTGGCTTCCAGGGAGCTAGGATAAGGGTCTGAAAGCACCCCA  300

seq1  CCCCACAGTGGAGCAGGCCAGTTAGCATTTCTCAGTGGCCTCTGCTTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACAGTGGAGCAGGCCAGTTAGCATTTCTCAGTGGCCTCTGCTTCAG  350

seq1  TCTGTGCCCTCAGGTTCCTGTATGAGTTCATGCAAGGACTTCCTTCAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCCCTCAGGTTCCTGTATGAGTTCATGCAAGGACTTCCTTCAATC  400

seq1  AAAGACTATGGGATAAAAATAAACCCTTTACTCCCTCAAGCAGTCATAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTATGGGATAAAAATAAACCCTTTACTCCCTCAAGCAGTCATAGC  450

seq1  ATTTGGGTCATATAGTATTTATTACAGCAACAGAAAAGAAACTAGAACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGTCATATAGTATTTATTACAGCAACAGAAAAGAAACTAGAACAG  500

seq1  ATGTAAGAAAGACCGAACACAGGAAGCAACAGAAAACAGGGCAATTCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAGAAAGACCGAACACAGGAAGCAACAGAAAACAGGGCAATTCTGA  550

seq1  AAGGAATTC  559
      |||||||||
seq2  AAGGAATTC  559

seq1: chr13_21335596_21336610
seq2: B6Ng01-019K21.g_67_1083

seq1  GAATTCTATAAAAGTCTTTTTCTTGTCTTTCTGCCTTTTTCTTCTCGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAAAAGTCTTTTTCTTGTCTTTCTGCCTTTTTCTTCTCGGTG  50

seq1  TCTTAATAATAATCAGACATGAGCACACAGAGGAACATGACTTCTAGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATAATAATCAGACATGAGCACACAGAGGAACATGACTTCTAGTTG  100

seq1  TCCTGCTTCCTGCTTACAAGGTAACCCAGAGCGAAGGTTGCTCCACCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTTCCTGCTTACAAGGTAACCCAGAGCGAAGGTTGCTCCACCACA  150

seq1  ACCCCTTTTGGCATGATTGTGTACAGAGACTGGTTCGGCATGAAGTAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTTTTGGCATGATTGTGTACAGAGACTGGTTCGGCATGAAGTAAAA  200

seq1  CTGGTGTTTGTTTTTCTCAGTTTATAGAGTAGAGCAAGTCTTAAGTGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTTTGTTTTTCTCAGTTTATAGAGTAGAGCAAGTCTTAAGTGAGT  250

seq1  GTGTAAGAAGCAAATGAGGTCCCGAGGTCCCGATCCTACTTGGATTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAGAAGCAAATGAGGTCCCGAGGTCCCGATCCTACTTGGATTGTTT  300

seq1  GACCCTGGGAGGGCATGCGGAGGACCAAGGCTTCAACTCCACAGGAGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGGGAGGGCATGCGGAGGACCAAGGCTTCAACTCCACAGGAGTGG  350

seq1  CAAAGATTCCCCCTTATAGGTAAGGCTTAGGAGCATGGCAAAGCCTTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATTCCCCCTTATAGGTAAGGCTTAGGAGCATGGCAAAGCCTTCCC  400

seq1  TAGTCCTAGTGCAAATGTTGACAGTGTGCAGATACAGGTGTTACGACTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCTAGTGCAAATGTTGACAGTGTGCAGATACAGGTGTTACGACTGA  450

seq1  CCACAATGTGTGCAAAATTTAGCAGATGCAGTTTCCTTCTCCAGGATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAATGTGTGCAAAATTTAGCAGATGCAGTTTCCTTCTCCAGGATGTT  500

seq1  TACAGCCAGAGACTCATTACCTACAGTCTAGTAGCTAACTCTTCCCCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCCAGAGACTCATTACCTACAGTCTAGTAGCTAACTCTTCCCCCTG  550

seq1  TGCTGTATGTAATAAACTCATTGAGGTTCCTGGTTGTTGAGAAGTAGGCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTATGTAATAAACTCATTGAGGTTCCTGGTTGTTGAGAAGTAGGCG  600

seq1  AGTTCGACCAAAGCAAGCCCAGCCTAGGGGATCCCCGTTTTTCTGTCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCGACCAAAGCAAGCCCAGCCTAGGGGATCCCCGTTTTTCTGTCCAC  650

seq1  GTGTCTGTGTGTCTTTACTTCCTTGATCAGGTTGAGTCCCAGCCACTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGTGTGTCTTTACTTCCTTGATCAGGTTGAGTCCCAGCCACTCAG  700

seq1  GAATTGATATCTCAACTCATCTGTGTCTAAGTTCCCCAAGACATCTTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGATATCTCAACTCATCTGTGTCTAAGTTCCCCAAGACATCTTTTC  750

seq1  TGGTTCTGTTCTTTTGCACTGGTCGCTTAGCAGTTCTGAAGGACTGAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTGTTCTTTTGCACTGGTCGCTTAGCAGTTCTGAAGGACTGAAAG  800

seq1  CCAGAAGCTGTGGTGTGTGTGT-GGGACATTGGTGTGACTGTATGGAATT  849
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCAGAAGCTGTGGTGTGTGTGTGGGGACATTGGTGTGACTGTATGGAATT  850

seq1  CTGCAGCTCAACAAAAACTGGGGATTACCAGGAGCTCCACTGGACTTGGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCTCAACAAAAACTGGGGATTACCAGGAGCTCCACTGGACTTGGC  900

seq1  ATTGTCTATGCTGAGGCCTCAAGATTCCAAGCATTCAGTTATTCTCTTTT  949
      ||||||||||||||||||||||||||| | ||||||||||||||||||||
seq2  ATTGTCTATGCTGAGGCCTCAAGATTCAAGGCATTCAGTTATTCTCTTTT  950

seq1  CTT-GGACAGATTGTCCA-CAGTATTGGTT-CTCTGGGACTTACTATGGG  996
      ||| |||||||||||||| ||| | ||||| ||||||||| |||||||||
seq2  CTTGGGACAGATTGTCCATCAGAAATGGTTCCTCTGGGAC-TACTATGGG  999

seq1  TTGCTTTTGGAATCTTAAC  1015
      || ||||| || |||||||
seq2  TT-CTTTTTGAGTCTTAAC  1017