BAC Information

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BAC

Clone NameB6Ng01-019N09
Chromosome13 (Build37)13 (Build37)
Map Location 21,962,512 - 21,963,68222,159,285 - 22,159,606
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622
Downstream geneLOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019N09.bB6Ng01-019N09.g
ACCDH852809DH852810
length1,163925
definitionDH852809|Mus musculus domesticus DNA, BAC clone: B6Ng01-019N09, 5' end.DH852810|Mus musculus domesticus DNA, BAC clone: B6Ng01-019N09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(21,962,512 - 21,963,682)(22,159,285 - 22,159,606)
sequence
gaattctatagtgtgcacaatccctgaagccctgttgctggagtctccaa
tcctattacataggtataaaaccccacataatccagatattataattata
agctgtgtgcctggattgggcagttctagcactgtactaacttattcacc
aactatgagaccccttgcttcttgaggtttctcctggccaaggggctctg
gttcatggtggcatctcctcctctccctccatcctctcttctcctctcac
cttcctcctctcttcctacctaccccaccccacactcttgagtctccctt
cctacctttctcctctactgcccaatcactgtccaattactgtcttagcc
tttttttttatagattttgaagtctacattttaatatttgatttaaaata
gatagcttaaccattttttaaaaatctgtcatttatattcatttctttta
aaaatgctatagtaaatgaaagtatattttgaaaagaatttcctctcttc
agtgactgttttcttcaaagttttttctttatctttgtttgatagtgaat
ccctaacattctcaacactcataactttggcaaatggggattgccttaag
attttgatcagtctcagtgattagtaggacagccttagacaggctacata
gaaaacccaaatctatcttcatacacacacagaaacacacatgcacacac
acacacatagacacatgcacacacacatttattgttcatgaagcctattc
ttatttcaataatgtgtgccttaataggttgtataggctaagcatttaaa
tgtgaaaaccattggagaaacataggctaaaaatgcagcagactctggtt
cacctccaactattttcacttcattgaagacacatgggaagtttagtgtt
tgctaatttatgtggacaggaattggtaggacatagacatacatagaaat
gctgaatgcagtttgtaaatttcatgtttttatagcccctggaaccccct
cccagaaaaataacattatcaattatcttatgacctacatttatcctgca
aatttttcacactgttcatgggactcactgtaccattttggaccaagtga
accatgagttcttttttatgcatgctccatttgaaaatgatgattgcctg
gaggagagaccct
gaattcttcactaaactcatctggttctggactttttttggttgggagac
tattaatgactgcttctacttctttaggggttatgggactgtttagatgg
tttatctgatcctgttttaactttggcaactgctatctgtctagaaaatt
gttaatttcgtccagattttccaatatacgcttttatagtaggatctgat
gatcttttgaacttccatgttttcggttgttattatcttcctttccattt
ctgattttattaatttggatactgtctctgtgccctctgtatcaatcttc
ttaattttcccaaagaatcagctcctggttttgttgtatagttgtttttg
tttctttttggttgatttcagccctgagtttgattattgcctgccttcta
ctcctcttgggtgtatttgcttctttttgttctagagctttcaggtgtgc
tgtcaaactgctagggtaagctctctgcagtctctttttgtagacacata
gaactatgagttttcctcttagcactgcttccattgtgtcccataagttt
tggtacgatgaatcttcattttcattaaattctaaaaagtctgatagaac
ttagttaagatcagccaagatagaacatagttaatgttaagtgataattt
ggggttatcaatgagatggtagattctaaaagcatggtgggtaggcagct
gcccagctatagtgctgcttaatgaatattaaaatataagattgtgtgta
tgttttccattcaagaaaataaatggtcagatgcacgaaggagcactggg
ctgggattttctaaatattttttactacagtgctttgttgaaaagtcttt
ttaaatcaaaagcctatgttcaggaaggtcacatgtcataacactactat
ccttgcagagactcctggaagcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_21962512_21963682
seq2: B6Ng01-019N09.b_45_1207

seq1  GAATTCTATAGTGTGCACAATCCCTGAAGCCCTGTTGCTGGAGTCTCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAGTGTGCACAATCCCTGAAGCCCTGTTGCTGGAGTCTCCAA  50

seq1  TCCTATTACATAGGTATAAAACCCCACATAATCCAGATATTATAATTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTACATAGGTATAAAACCCCACATAATCCAGATATTATAATTATA  100

seq1  AGCTGTGTGCCTGGATTGGGCAGTTCTAGCACTGTACTAACTTATTCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGTGCCTGGATTGGGCAGTTCTAGCACTGTACTAACTTATTCACC  150

seq1  AACTATGAGACCCCTTGCTTCTTGAGGTTTCTCCTGGCCAAGGGGCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATGAGACCCCTTGCTTCTTGAGGTTTCTCCTGGCCAAGGGGCTCTG  200

seq1  GTTCATGGTGGCATCTCCTCCTCTCCCTCCATCCTCTCTTCTCCTCTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATGGTGGCATCTCCTCCTCTCCCTCCATCCTCTCTTCTCCTCTCAC  250

seq1  CTTCCTCCTCTCTTCCTACCTACCCCACCCCACACTCTTGAGTCTCCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCCTCTCTTCCTACCTACCCCACCCCACACTCTTGAGTCTCCCTT  300

seq1  CCTACCTTTCTCCTCTACTGCCCAATCACTGTCCAATTACTGTCTTAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCTTTCTCCTCTACTGCCCAATCACTGTCCAATTACTGTCTTAGCC  350

seq1  TTTTTTTTTATAGATTTTGAAGTCTACATTTTAATATTTGATTTAAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTATAGATTTTGAAGTCTACATTTTAATATTTGATTTAAAATA  400

seq1  GATAGCTTAACCATTTTTTAAAAATCTGTCATTTATATTCATTTCTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCTTAACCATTTTTTAAAAATCTGTCATTTATATTCATTTCTTTTA  450

seq1  AAAATGCTATAGTAAATGAAAGTATATTTTGAAAAGAATTTCCTCTCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCTATAGTAAATGAAAGTATATTTTGAAAAGAATTTCCTCTCTTC  500

seq1  AGTGACTGTTTTCTTCAAAGTTTTTTCTTTATCTTTGTTTGATAGTGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTGTTTTCTTCAAAGTTTTTTCTTTATCTTTGTTTGATAGTGAAT  550

seq1  CCCTAACATTCTCAACACTCATAACTTTGGCAAATGGGGATTGCCTTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAACATTCTCAACACTCATAACTTTGGCAAATGGGGATTGCCTTAAG  600

seq1  ATTTTGATCAGTCTCAGTGATTAGTAGGACAGCCTTAGACAGGCTACATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGATCAGTCTCAGTGATTAGTAGGACAGCCTTAGACAGGCTACATA  650

seq1  GAAAACCCAAATCTATCTTCATACACACACAGAAACACACATGCACACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCCAAATCTATCTTCATACACACACAGAAACACACATGCACACAC  700

seq1  ACACACATAGACACATGCACACACACATTTATTGTTCATGAAGCCTATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATAGACACATGCACACACACATTTATTGTTCATGAAGCCTATTC  750

seq1  TTATTTCAATAATGTGTGCCTTAATAGGTTGTATAGGCTAAGCATTTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCAATAATGTGTGCCTTAATAGGTTGTATAGGCTAAGCATTTAAA  800

seq1  TGTGAAAACCATTGGAGAAACATAGGCTAAAAATGCAGCAGGACTCTGGT  850
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGTGAAAACCATTGGAGAAACATAGGCTAAAAATGCAGCA-GACTCTGGT  849

seq1  TCACCTCCAACTATTTTCACTTCATTGAAGACACATGGGAAGTTTTAGTG  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCACCTCCAACTATTTTCACTTCATTGAAGACACATGGGAAG-TTTAGTG  898

seq1  TTTGCTAATTTATGTGGACAGGAATTGGTAGGACATAGACATACATAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTAATTTATGTGGACAGGAATTGGTAGGACATAGACATACATAGAA  948

seq1  ATGCTGAATGCAGTTTGTAAATTTCATGTTTTTATAGCCCCTGGAA-CTC  999
      |||||||||||||||||||||||||||||||||||||||||||||| | |
seq2  ATGCTGAATGCAGTTTGTAAATTTCATGTTTTTATAGCCCCTGGAACCCC  998

seq1  CTCCCAGAAAAATAACATATCCATTTATTCTTTAATGACCTACATTTTAT  1049
      ||||||||||||||||||   || ||| ||||  |||||||||| |||||
seq2  CTCCCAGAAAAATAACATTATCAATTA-TCTT--ATGACCTACA-TTTAT  1044

seq1  CTTGCAAATTTTTTCAACTGTTTCATGGGACTCACTGTACCATTTTGGAC  1099
      | |||||||||||   |||| |||||||||||||||||||||||||||||
seq2  CCTGCAAATTTTTCACACTG-TTCATGGGACTCACTGTACCATTTTGGAC  1093

seq1  AAAGTGAACCCATGAGTTCTTTTTATATGCATGCTTCATTTGAAAATGAT  1149
       ||||||| ||||||||||||||| |||||||||| ||||||||||||||
seq2  CAAGTGAA-CCATGAGTTCTTTTT-TATGCATGCTCCATTTGAAAATGAT  1141

seq1  GATGGCTGGGAGGAGAGACCCT  1171
      ||| ||  ||||||||||||||
seq2  GATTGCCTGGAGGAGAGACCCT  1163

seq1: chr13_22159285_22159606
seq2: B6Ng01-019N09.g_671_992

seq1  GTTAAGAGCAGCCAAGATAGAACATAGTTAATATTAAGTGATAATTTGGG  50
      ||||||| |||||||||||||||||||||||| |||||||||||||||||
seq2  GTTAAGATCAGCCAAGATAGAACATAGTTAATGTTAAGTGATAATTTGGG  50

seq1  GTTATCAGTGGGAAGGTAGATTCTAAAAGCATGGTGGGTAGGCAGCTGCC  100
      ||||||| || || ||||||||||||||||||||||||||||||||||||
seq2  GTTATCAATGAGATGGTAGATTCTAAAAGCATGGTGGGTAGGCAGCTGCC  100

seq1  CAGCTATAGTGCTGCTTAATGAATATTAAAATATAAGACTGTGTGTGTGT  150
      |||||||||||||||||||||||||||||||||||||| ||||||| |||
seq2  CAGCTATAGTGCTGCTTAATGAATATTAAAATATAAGATTGTGTGTATGT  150

seq1  TTTCCATTCAGGAACATAAATGGTCAAATGCAGGAAGGAACACTGTGCTG  200
      |||||||||| ||| ||||||||||| ||||| |||||| ||||| ||||
seq2  TTTCCATTCAAGAAAATAAATGGTCAGATGCACGAAGGAGCACTGGGCTG  200

seq1  GGATTTATTAAGTATTTTTTACTAAAGTACTTTGTTGAAAGGTCTTTTTG  250
      ||||||  ||| |||||||||||| ||| ||||||||||| |||||||| 
seq2  GGATTTTCTAAATATTTTTTACTACAGTGCTTTGTTGAAAAGTCTTTTTA  250

seq1  TATCAAAAGCCTATG-TCAGGAAGGTTCACATATCATAGCACTACTATCC  299
       |||||||||||||| ||||||||| |||||| ||||| |||||||||||
seq2  AATCAAAAGCCTATGTTCAGGAAGG-TCACATGTCATAACACTACTATCC  299

seq1  TTGCAGAGACTCCTGGAAGCTTC  322
      |||||||||||||||||||||||
seq2  TTGCAGAGACTCCTGGAAGCTTC  322