BAC Information

Click to search

BAC

Clone NameB6Ng01-020L22
Chromosome13 (Build37)
Map Location 29,707,249 - 29,708,299
singlet/doubletsinglet
Overlap geneCdkal1
Upstream geneLOC626683, 2610307P16Rik, Sox4, LOC100041135
Downstream geneE2f3, Mboat1, Agtr1a, Uqcrfs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020L22.b
ACCDH853451
length1,035
definitionDH853451|Mus musculus domesticus DNA, BAC clone: B6Ng01-020L22, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctgctgctggggccggactatgctgctaaaataaaccactctt
agactaaaatatgaagagccatggggatcacgccattctctacgaccttt
ctacccactgtgacgcaagacccttgaatcaagatgacctgcagacgcac
aggctttacattactaaccagtatagcattcccaagtcagcaaaattccc
acgcgatccttacatactttgccacatggaaaacatgtttggaatccagt
gtttcttctgaagaggttacccaggtggagacatttgtggtcaggcatgt
gtatgtacacatataggcattacaaccactgtgtaaggtacccaggtgga
gacatgtgtggtctcgcatgtgtatgtacacatataggcattacaaccac
tgtgtaaggtacccaggcggaaacatgtgtggtcaggcatgtgtatgtat
acatataggcattacaaccactgtgtaaggtacccacgcgtggacatgtg
tggtcaggcatgtgtatgtatacatataggcattacgaccactgtgtaat
gaacacagcgtgattctcatgctgcaccctgctttttcaggtccttcctc
cttgttcacatcatttgagtttagtcggataactaaaatatgtcttcaac
tgtgtcacactgcgctaacatcaggactatggttttaatgagtgctgtcc
tatcactaggaaccgtgatgtgtgagaaaaagcccaaactcacacgcagt
ggatcttatcttgcagttcccagctgtgtaagctactatgtttactgata
ctgcaggactggattactgtacagtattttgtatgttgatcacaacagga
taggtactactgtgcttttcatagatgtctcaataattcagagagaattg
attctctttccttcttattttcccatctggaaattggaagccagcctact
agtcgacacacagagtgaaactgccattgcagagctgtgctcaggacttg
gagacatcactaaggtccttcctgttacatgatca
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_29707249_29708299
seq2: B6Ng01-020L22.b_41_1075

seq1  GAATTCTCTACGGCTGGGGCCAGACTATGCTGCTAAAATAAACCACTCTT  50
      ||||||||| | ||||||||| ||||||||||||||||||||||||||||
seq2  GAATTCTCTGCTGCTGGGGCCGGACTATGCTGCTAAAATAAACCACTCTT  50

seq1  AGACTAAAATATGAAGAGCCATGCAGATCACGCCATTCTCTAGGACCTTT  100
      |||||||||||||||||||||||  ||||||||||||||||| |||||||
seq2  AGACTAAAATATGAAGAGCCATGGGGATCACGCCATTCTCTACGACCTTT  100

seq1  CTACCCACTGTGACGCAAGACCCTTGAATCAGGATGACCTGCAGACGCAC  150
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTACCCACTGTGACGCAAGACCCTTGAATCAAGATGACCTGCAGACGCAC  150

seq1  AGGCTTTACATTACTAACCAGTATAGCATTCCCAAGTCAGCAAAATTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTACATTACTAACCAGTATAGCATTCCCAAGTCAGCAAAATTCCC  200

seq1  AGGCAATCCATACATACTTTGCCACATGGAAAACATGTTTGGAATCCAGT  250
      | || |||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACGCGATCCTTACATACTTTGCCACATGGAAAACATGTTTGGAATCCAGT  250

seq1  GTTTCTTCTGAAGAGGTTACCCAGGTGGAGACATTTGTGGTCAGGCATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTCTGAAGAGGTTACCCAGGTGGAGACATTTGTGGTCAGGCATGT  300

seq1  GTATGTACACATATAGGCATTACAACCACTGTGTAAGGTACCCAGGTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTACACATATAGGCATTACAACCACTGTGTAAGGTACCCAGGTGGA  350

seq1  GACATGTGTGGTCAGGCATGTGTATGTACACATATAGGCATTACAACCAC  400
      |||||||||||||  |||||||||||||||||||||||||||||||||||
seq2  GACATGTGTGGTCTCGCATGTGTATGTACACATATAGGCATTACAACCAC  400

seq1  TGTGTAAGGTACCCAGGCGGAGACATGTGTGGTCAGGCATGTGTATGTAT  450
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGTGTAAGGTACCCAGGCGGAAACATGTGTGGTCAGGCATGTGTATGTAT  450

seq1  ACATATAGGCATTACAACCACTGTGTAAGGTACCCAGGCGTGGACATGTG  500
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACATATAGGCATTACAACCACTGTGTAAGGTACCCACGCGTGGACATGTG  500

seq1  TGGTCAGGCATGTGTATGTATACATATAGGCATTACAACCACTGTGTAAG  550
      |||||||||||||||||||||||||||||||||||| |||||||||||| 
seq2  TGGTCAGGCATGTGTATGTATACATATAGGCATTACGACCACTGTGTAAT  550

seq1  GAACACAGCGTGATTCTCAGGCTGCACCCTGCTTTTTCAGGTCCTTCCTC  600
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAACACAGCGTGATTCTCATGCTGCACCCTGCTTTTTCAGGTCCTTCCTC  600

seq1  CTTGTTCACTTCTTTTGAGTTTAGTCGGATAACTAAAATATGTCTTCAAC  650
      ||||||||| || |||||||||||||||||||||||||||||||||||||
seq2  CTTGTTCACATCATTTGAGTTTAGTCGGATAACTAAAATATGTCTTCAAC  650

seq1  TGTGTAAGAGTGCAGTAAGATCAGGATTATGGTTTTAAGAATTGCTGTCC  700
      ||||| | | |||  ||| ||||||| |||||||||||  | ||||||||
seq2  TGTGTCACACTGCGCTAACATCAGGACTATGGTTTTAATGAGTGCTGTCC  700

seq1  TATCACCAGGAACCGTGAAGTGTG-GAAAAAGCCCAAACTCACACCCAGC  749
      |||||| ||||||||||| ||||| |||||||||||||||||||| ||| 
seq2  TATCACTAGGAACCGTGATGTGTGAGAAAAAGCCCAAACTCACACGCAGT  750

seq1  AGTTCTTAGCTTGCAGTTCCCAGCTGTGTAAGCTACTATGTTTACTGATA  799
       | ||||| |||||||||||||||||||||||||||||||||||||||| 
seq2  GGATCTTATCTTGCAGTTCCCAGCTGTGTAAGCTACTATGTTTACTGAT-  799

seq1  ACTGCAGGACTGGATTACTGTACAGTATTTTGTATGTTGATCAACAACAG  849
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACTGCAGGACTGGATTACTGTACAGTATTTTGTATGTTGATC-ACAACAG  848

seq1  GATAGGTACTACTGTGCATTCACATAGTTGGCTCAGTGACTTTAAGAAAA  899
      ||||||||||||||||| ||  ||||| || |||| | |  || || | |
seq2  GATAGGTACTACTGTGC-TTTTCATAGATGTCTCAATAA--TTCAG-AGA  894

seq1  GAATTTATTCTCTTTCCTTCTTAGTTTTCCCATCTGGAAACCGGAAGCAA  949
      ||||| ||||||||||||||||| ||||||||||||||||  |||||| |
seq2  GAATTGATTCTCTTTCCTTCTTA-TTTTCCCATCTGGAAATTGGAAGCCA  943

seq1  GCCTACCTAGCAGACACACAGAGTGGAAACTGCCATTGCAGAGCTGTGCC  999
      ||||| ||||  |||||||||||| ||||||||||||||||||||||| |
seq2  GCCTA-CTAGTCGACACACAGAGT-GAAACTGCCATTGCAGAGCTGTG-C  990

seq1  TCTAGGACTTGGAAGACATTCACTAAAGGGTTCCTTCCTGTTAGAGTGAT  1049
      || ||||||||| ||||| |||||||   | |||||||||||| | ||||
seq2  TC-AGGACTTGG-AGACA-TCACTAA---GGTCCTTCCTGTTACA-TGAT  1033

seq1  CA  1051
      ||
seq2  CA  1035