BAC Information

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BAC

Clone NameB6Ng01-022C15
Chromosome13 (Build37)2 (Build37)
Map Location 10,680,381 - 10,681,30299,276,155 - 99,276,899
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZmynd11, Chrm3, LOC100039604
Downstream geneLOC100039648, Zp4, Ryr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022C15.bB6Ng01-022C15.g
ACCDH854457DH854458
length1,008970
definitionDH854457|Mus musculus domesticus DNA, BAC clone: B6Ng01-022C15, 5' end.DH854458|Mus musculus domesticus DNA, BAC clone: B6Ng01-022C15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(10,680,381 - 10,681,302)(99,276,155 - 99,276,899)
sequence
gaattcagttctgcccctggtattacactatctctttgagtaaaagttag
gtcactgcccttcacaggaatctaccatcacctaggaagaaagaagtttc
tgaccgtaggagaaaccagaatagatacttagaactatagctgagttata
cccatatacaggaatttacaatggtttaggaagtagatcgggctgtggtt
ttagagtattgcattattcatgagatggttagctagaacggaactcccta
gttagcaccatgacttgggtgtgaaagcccttgccctaggagtgaaaggt
tctcacaccttagatagggctgactctgtctcagttattttattgcccag
ttcctgccagtctttgtgttttcatttctctattctattaaggttacctc
atttgtaccttgcgggtatgtcacccaacttctttattgtcttctgcata
aaatgtctgatgcttgatttgaaaaatacattcaggttccacacgacctc
tcctgtctgcgtctgtttgtcactcatcctacgctttgtccacccgcgac
tagagacccgttctacgcagacaaaggggcccagagggtctgcggcacat
gaaataacagaaagaaagatgattgagaccagattttttgtcactgtttg
agtaaaattttgtctagccaatcaatgaatgagagcaattcaacacctaa
ttattatcattgctaaaatcaattaatttcaatatattaataaaatgaga
tgaagacaaagtgtgaaatgctccaaactgtcagttgccagctaagtcat
tagagtttttcagtacacacacacacacacacacacacacatatttgtaa
tagatatcagagtgggaatgggttccctggaaagaggtgtgcaccacaga
atggaggtgtgaggtgtatagttattgaaagagaatgcttccagactatc
tgtgaaaaaaatattgaattttgaatgagtcaactcggtttgtatctgct
cggagtag
gaattcacgcagttgaatccttctcaacagtctgttttacgggaacactt
cattaccaccgttccccagctgaagagttctgaattcacgcaggtgaatc
cttctcaacagtctgttttacgggaacctttattaccatgacccgcagtt
ctggttccagaatgagggatcttccttgcgccggtgatggtaaccgtccc
aggtcttctcgtcccgggttttctcatcccgggttttctcgtcccagatc
ttctcgttccaggtcttctcgtcccaggtcttctcgtcccgtcccgagtt
ttcttgtcccgggtttcggcaccaactcttacacgcgttctcgcgaccgg
ccaggaaagacgcaacaaaccggaatcttctgcggcaaaagctttattgc
ttacatcttcaggagccagagagcaagagagcaagagagcaagaagaaga
acaagagcaagaagaagaacaagagcaagaaagagaaaaagcaagaacaa
gagagagagaatggcaaaaccccgtcccttttaaggagaattatcctccg
cctaggacgtattactccctgattggctgcagcccatcggcccagttgtc
atcacgggaaaggcagaacacatggcgggaaaactgcccctgcacgtgtg
cagattatgtttaccacttagaaaacagctgtcagcgccatcttgtaatg
gcaaatgtgagggcggctcccaacagagagaatcttaaaggaaagtgagc
cgagaatgagaggataaaatgacaaaggggttgtgcttaatttacattac
acctacattttaaaatgttttttaggtgtgtgtgtagttttgcctgcatc
caagtctgtgtatcttaagtgtgtgtctcatgcccaaggaaaccaagaga
gggcattaggattctcaaactggagttacagactgccctgagctgcagtg
tggtgtgcttggaaatcagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_10680381_10681302
seq2: B6Ng01-022C15.b_141_1050

seq1  TCTGACCGTAGGAGAAACCAGAATAGATACTTAGAACTATAGCTGAGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCGTAGGAGAAACCAGAATAGATACTTAGAACTATAGCTGAGTTA  50

seq1  TACCCATATACAGGAATTTACAATGGTTTAGGAAGTAGATCGGGCTGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCATATACAGGAATTTACAATGGTTTAGGAAGTAGATCGGGCTGTGG  100

seq1  TTTTAGAGTATTGCATTATTCATGAGATGGTTAGCTAGAACGGAACTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAGTATTGCATTATTCATGAGATGGTTAGCTAGAACGGAACTCCC  150

seq1  TAGTTAGCACCATGACTTGGGTGTGAAAGCCCTTGCCCTAGGAGTGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAGCACCATGACTTGGGTGTGAAAGCCCTTGCCCTAGGAGTGAAAG  200

seq1  GTTCTCACACCTTAGATAGGGCTGACTCTGTCTCAGTTATTTTATTGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCACACCTTAGATAGGGCTGACTCTGTCTCAGTTATTTTATTGCCC  250

seq1  AGTTCCTGCCAGTCTTTGTGTTTTCATTTCTCTATTCTATTAAGGTTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTGCCAGTCTTTGTGTTTTCATTTCTCTATTCTATTAAGGTTACC  300

seq1  TCATTTGTACCTTGCGGGTATGTCACCCAACTTCTTTATTGTCTTCTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGTACCTTGCGGGTATGTCACCCAACTTCTTTATTGTCTTCTGCA  350

seq1  TAAAATGTCTGATGCTTGATTTGAAAAATACATTCAGGTTCCACACGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGTCTGATGCTTGATTTGAAAAATACATTCAGGTTCCACACGACC  400

seq1  TCTCCTGTCTGCGTCTGTTTGTCACTCATCCTACGCTTTGTCCACCCGCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGTCTGCGTCTGTTTGTCACTCATCCTACGCTTTGTCCACCCGCG  450

seq1  ACTAGAGACCCGTTCTACGCAGACAAAGGGGCCCAGAGGGTCTGCGGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAGACCCGTTCTACGCAGACAAAGGGGCCCAGAGGGTCTGCGGCAC  500

seq1  ATGAAATAACAGAAAGAAAGATGATTGAGACCAGA-TTTTTGTCACTGTT  549
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATGAAATAACAGAAAGAAAGATGATTGAGACCAGATTTTTTGTCACTGTT  550

seq1  TGAGTAAAATTTTGTCTAGCCAATCAATGAATGAGAGCAATTCAACACCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAAAATTTTGTCTAGCCAATCAATGAATGAGAGCAATTCAACACCT  600

seq1  AATTATTATCATTGCTAAAATCAATTAATTTCAATATATTAATAAAATGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTATCATTGCTAAAATCAATTAATTTCAATATATTAATAAAATGA  650

seq1  GATGAAGACAAAGTGTGAAATGCTCCAAACTGTCAGTTGCCAGCTAAGTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGACAAAGTGTGAAATGCTCCAAACTGTCAGTTGCCAGCTAAGTC  700

seq1  ATTAGAG-TTTTCAGTACACACACACACACACACACACACACATATTTGT  748
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAGTTTTTCAGTACACACACACACACACACACACACACATATTTGT  750

seq1  AATAGATATCAGAGTGGGAATGGGTT-CCTGGAAAGAGGTGTGCACCAAC  797
      |||||||||||||||||||||||||| |||||||||||||||||||| ||
seq2  AATAGATATCAGAGTGGGAATGGGTTCCCTGGAAAGAGGTGTGCACC-AC  799

seq1  AGGAATGGAGGTGTGAGGTGTTATAGTTATTGCAGATGAGA-AATGCTTC  846
      | |||||||||||||||||| ||||||||||| |    ||| ||||||| 
seq2  A-GAATGGAGGTGTGAGGTG-TATAGTTATTGAA----AGAGAATGCTT-  842

seq1  CCAGACTATACTGTGGAAAATAAATATTGAAATTTTGAATGAGTTCAACA  896
      ||||||||| |||||  ||| |||||||| ||||||||||||| ||||| 
seq2  CCAGACTAT-CTGTG--AAAAAAATATTG-AATTTTGAATGAG-TCAAC-  886

seq1  TCTGTTTTGTATCTGCTCTGGAGTAG  922
      || | ||||||||||||| |||||||
seq2  TC-GGTTTGTATCTGCTC-GGAGTAG  910

seq1: chr2_99276155_99276899
seq2: B6Ng01-022C15.g_66_786 (reverse)

seq1  GGGAGCCGCCCTCACATTTGCCATTATAAGATGGCGCTGACAGCTGTTTT  50
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGGAGCCGCCCTCACATTTGCCATTACAAGATGGCGCTGACAGCTGTTTT  50

seq1  CTAAGTGGTAAACATAATCTGCACACGTGCAGGGGCAGTTTTCCCGCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGGTAAACATAATCTGCACACGTGCAGGGGCAGTTTTCCCGCCAT  100

seq1  GTGTTCTGCCTTTCCCGTGATGACAACTGAGCCGATGGGCTGCAGCCAAT  150
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTGTTCTGCCTTTCCCGTGATGACAACTGGGCCGATGGGCTGCAGCCAAT  150

seq1  CAGGGAGTAATACGTCCTAGGCGGAGGATAATTCTCCTTAAAAGGGACGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGTAATACGTCCTAGGCGGAGGATAATTCTCCTTAAAAGGGACGG  200

seq1  GGTTTTGCCATTCTTTCTCTCTCTCTTGTTCTTGCTTTTTCTCTCTCTTG  250
      ||||||||||    |||||||||||||||||||||||||||||| |||||
seq2  GGTTTTGCCA----TTCTCTCTCTCTTGTTCTTGCTTTTTCTCTTTCTTG  246

seq1  CT-TTCTTGTTCTTTTTGCTC----------TCTTG--CTCTGGCTCTCT  287
      || || || ||||| ||||||          |||||  |||| |||||||
seq2  CTCTTGTTCTTCTTCTTGCTCTTGTTCTTCTTCTTGCTCTCTTGCTCTCT  296

seq1  TGCACTCTTGCTCCTGAAGATGTAAGCAATAAAG-TTTTGCCGCAGAAGA  336
      ||| |||| ||||||||||||||||||||||||| |||||||||||||||
seq2  TGCTCTCTGGCTCCTGAAGATGTAAGCAATAAAGCTTTTGCCGCAGAAGA  346

seq1  TTCCGGTTTGCTGCGTTCTTCCTGGCCGGTCGCGAGAACGCGGGTAAGAG  386
      |||||||||| |||||  |||||||||||||||||||||||| |||||||
seq2  TTCCGGTTTGTTGCGTCTTTCCTGGCCGGTCGCGAGAACGCGTGTAAGAG  396

seq1  TTGGTGCTGAGACC---------------TGGGACGGGACGAGAAGACCT  421
      ||||||| || |||                ||||||||||||||||||||
seq2  TTGGTGCCGAAACCCGGGACAAGAAAACTCGGGACGGGACGAGAAGACCT  446

seq1  GGGACGAGAAGAC---------------CTGGGACGAGAAATCCTGGGAT  456
      |||||||||||||               ||||||||||||| || |||||
seq2  GGGACGAGAAGACCTGGAACGAGAAGATCTGGGACGAGAAAACCCGGGAT  496

seq1  GAGAAAACCC---------------GGGATGGTTACCATCACCGGCGCAA  491
      ||||||||||               |||| ||||||||||||||||||||
seq2  GAGAAAACCCGGGACGAGAAGACCTGGGACGGTTACCATCACCGGCGCAA  546

seq1  GGAAGATCCCTCATTCTGGAACCAGAACTGCGGGTCACGGTAATGAAGTG  541
      ||||||||||||||||||||||||||||||||||||| |||||| ||| |
seq2  GGAAGATCCCTCATTCTGGAACCAGAACTGCGGGTCATGGTAATAAAG-G  595

seq1  TTCCCGTAAAACAGACTGTTGAGAAGGAT---CCAGCCTGAATTCAGAAC  588
      |||||||||||||||||||||||||||||   || || ||||||||||||
seq2  TTCCCGTAAAACAGACTGTTGAGAAGGATTCACCTGCGTGAATTCAGAAC  645

seq1  TCTTCAGCTGGGGAACGGTGGTAATAAAGTGTTCCCGCATCACAGACTGT  638
      ||||||||||||||||||||||||| ||||||||||| |  |||||||||
seq2  TCTTCAGCTGGGGAACGGTGGTAATGAAGTGTTCCCGTAAAACAGACTGT  695

seq1  TGAGAAGGATTCAACTGCGTGAATTCAGAACTCTTCAGCTGGGGAACGGT  688
      ||||||||||||||||||||||||||                        
seq2  TGAGAAGGATTCAACTGCGTGAATTC------------------------  721

seq1  GGTAATGAAGTGTTCCCGCATCACAGACTGTTGAGAAGGATTCAACTGCA  738
                                                        
seq2  --------------------------------------------------  721

seq1  TGAATTC  745
             
seq2  -------  721