BAC Information

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BAC

Clone NameB6Ng01-022M20
Chromosome13 (Build37)
Map Location 22,091,857 - 22,248,769
singlet/doubletdoublet
Overlap genePrss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8
Upstream geneAoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24
Downstream geneLOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022M20.bB6Ng01-022M20.g
ACCDH854906DH854907
length342993
definitionDH854906|Mus musculus domesticus DNA, BAC clone: B6Ng01-022M20, 5' end.DH854907|Mus musculus domesticus DNA, BAC clone: B6Ng01-022M20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,248,428 - 22,248,769)(22,091,857 - 22,092,842)
sequence
cagtttgatggttttatgagattccctagtgtgaaaatagtggatctctg
attccactgtcttctctttgactctttttcttctgtttgtttgtcttgtt
caatgtggatgtggtagtttttattttataatagtatattttattttgct
ataattttgagtgaatgactgcaaatcttgccactggggtaaacgttaac
atgtgaactgtcacatttaccttctcagaggggggaaattaattttcttt
cagaataacacttggtatatcaactactccgggacaggtatcatgttcaa
gtatataactggactccagaggtgagtgtgtgtgtgtgtgtg
gaattccagatttgttgttcttatcttcctcggctccctcaacccaactg
tgttttagagtctccaaagtttttttgttttttgtttttttgtttttgtt
tttgtttttttttccccccaggcaatgtcctctctcctgtaacaagtgct
gggaacacctagctatgtggggcagagaaccccaaagtagagcattccct
gcttgatgaaaaactggggggaggagattagaaaagctaattgatcttag
atcttctttccaagtcagtcctggaatcgagctcctttctcacgttgtac
agacctacaaagtaaaagaaatgcatttctatctgcacctttgtcctgtg
aatttcctggaggagttgaaggctggctgagattacacatcgtgggctaa
ctagctctatggactccagcacatactggattagtaaacatgagacgtgt
tctgtgtctgactgacaaggctgatgtcatgctgtgttcctcctggtcct
ttttttttttgttatctctgccagtcttacatatgtaagtgcaaatagag
catttacaatcatctgggctttcatctaacccagaagtgagccttcataa
aaaaacccctgtagtgctcacttaatgcatttattttaattgtatatctg
agattaaaaacataaaaggcaaaagaaaaataaataacaaaatttctctg
ttctgataaaataagatacatgttgcttcttgctcaccctccttccccac
tgtcctttgacctcctcctttcattgggtctcccttctcctctacagtcg
tcctcttttcagtgatgtggtttcttaaattattggtttgcaagtctggg
agacttgcctctaggaacagggttgggaaaagagggaggctgtgcttgat
gattttttattttttttaaagctttttaaacaataagagtgaggtcaaac
tggtaccctggacatctcttctcggactggtaggagagaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_22248428_22248769
seq2: B6Ng01-022M20.b_50_391 (reverse)

seq1  CACACACACACACACACTCACCTCTGGAGTCCAGTTATATACTTGAACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACTCACCTCTGGAGTCCAGTTATATACTTGAACAT  50

seq1  GATACCTGTCCCGGAGTAGTTGATATACCAAGTGTTATTCTGAAAGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCTGTCCCGGAGTAGTTGATATACCAAGTGTTATTCTGAAAGAAAA  100

seq1  TTAATTTCCCCCCTCTGAGAAGGTAAATGTGACAGTTCACATGTTAACGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTCCCCCCTCTGAGAAGGTAAATGTGACAGTTCACATGTTAACGT  150

seq1  TTACCCCAGTGGCAAGATTTGCAGTCATTCACTCAAAATTATAGCAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCCAGTGGCAAGATTTGCAGTCATTCACTCAAAATTATAGCAAAAT  200

seq1  AAAATATACTATTATAAAATAAAAACTACCACATCCACATTGAACAAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATACTATTATAAAATAAAAACTACCACATCCACATTGAACAAGAC  250

seq1  AAACAAACAGAAGAAAAAGAGTCAAAGAGAAGACAGTGGAATCAGAGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAGAAGAAAAAGAGTCAAAGAGAAGACAGTGGAATCAGAGATC  300

seq1  CACTATTTTCACACTAGGGAATCTCATAAAACCATCAAACTG  342
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATTTTCACACTAGGGAATCTCATAAAACCATCAAACTG  342

seq1: chr13_22091857_22092842
seq2: B6Ng01-022M20.g_69_1054

seq1  GAATTCCAGATTTGTTGTTCTTATCTTCCTCGGCTCCCTCAACCCAACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATTTGTTGTTCTTATCTTCCTCGGCTCCCTCAACCCAACTG  50

seq1  TGTTTTAGAGTCTCCAAAGTTTTTTTGTTTTTTGTTTTTTTGTTTTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAGAGTCTCCAAAGTTTTTTTGTTTTTTGTTTTTTTGTTTTTGTT  100

seq1  TTTGTTTTTTTTTCCCCCCAGGCAATGTCCTCTCTCCTGTAACAAGTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTTTTTCCCCCCAGGCAATGTCCTCTCTCCTGTAACAAGTGCT  150

seq1  GGGAACACCTAGCTATGTGGGGCAGAGAACCCCAAAGTAGAGCATTCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACACCTAGCTATGTGGGGCAGAGAACCCCAAAGTAGAGCATTCCCT  200

seq1  GCTTGATGAAAAACTGGGGGGAGGAGATTAGAAAAGCTAATTGATCTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGATGAAAAACTGGGGGGAGGAGATTAGAAAAGCTAATTGATCTTAG  250

seq1  ATCTTCTTTCCAAGTCAGTCCTGGAATCGAGCTCCTTTCTCACGTTGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTTTCCAAGTCAGTCCTGGAATCGAGCTCCTTTCTCACGTTGTAC  300

seq1  AGACCTACAAAGTAAAAGAAATGCATTTCTATCTGCACCTTTGTCCTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTACAAAGTAAAAGAAATGCATTTCTATCTGCACCTTTGTCCTGTG  350

seq1  AATTTCCTGGAGGAGTTGAAGGCTGGCTGAGATTACACATCGTGGGCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCTGGAGGAGTTGAAGGCTGGCTGAGATTACACATCGTGGGCTAA  400

seq1  CTAGCTCTATGGACTCCAGCACATACTGGATTAGTAAACATGAGACGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTCTATGGACTCCAGCACATACTGGATTAGTAAACATGAGACGTGT  450

seq1  TCTGTGTCTGACTGACAAGGCTGATGTCATGCTGTGTTCCTCCTGGTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTCTGACTGACAAGGCTGATGTCATGCTGTGTTCCTCCTGGTCCT  500

seq1  TTTTTTTTTTGTTATCTCTGCCAGTCTTACATATGTAAGTGCAAATAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTGTTATCTCTGCCAGTCTTACATATGTAAGTGCAAATAGAG  550

seq1  CATTTACAATCATCTGGGC-TTCATCTAACCCAGAAGTGAGCCTTCATAA  599
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CATTTACAATCATCTGGGCTTTCATCTAACCCAGAAGTGAGCCTTCATAA  600

seq1  AAAAACCCCTGTAGTGCTCACTTAATGCATTTATTTTAATTGTATATCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCCCTGTAGTGCTCACTTAATGCATTTATTTTAATTGTATATCTG  650

seq1  AGATT-AAAACAT-AAAGGCAAAAGAAAAAT-AATAACAAAATTTCTCTG  696
      ||||| ||||||| ||||||||||||||||| ||||||||||||||||||
seq2  AGATTAAAAACATAAAAGGCAAAAGAAAAATAAATAACAAAATTTCTCTG  700

seq1  TTCTGATAAAATAAGATACATGTTGC-TCTTGCTCACCCTCCTTCCCCAC  745
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTCTGATAAAATAAGATACATGTTGCTTCTTGCTCACCCTCCTTCCCCAC  750

seq1  TGTCCTTTGACCTCCTCCTTTCATT-GGTCTCCCTTCTCCTCTACAGTCG  794
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGTCCTTTGACCTCCTCCTTTCATTGGGTCTCCCTTCTCCTCTACAGTCG  800

seq1  TCCTC-TTTCAGTTGATGTGGTTTCATTAAATTATTGGTTTTGCAAGTCT  843
      ||||| |||||| |||||||||||| |||||||||||| |||||||||||
seq2  TCCTCTTTTCAG-TGATGTGGTTTC-TTAAATTATTGG-TTTGCAAGTCT  847

seq1  GGGAGACTTGCCTCTAGGAACA-GGTTGGGAAAAGAGGGAGGCTGTGCTT  892
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGGAGACTTGCCTCTAGGAACAGGGTTGGGAAAAGAGGGAGGCTGTGCTT  897

seq1  GA-GATTTTTTATTTTTTTTTAAAGCTTTTTTAAACCAGTAAGAGTGAGG  941
      || ||||||||| ||||||||||||||||||  || || |||||||||||
seq2  GATGATTTTTTA-TTTTTTTTAAAGCTTTTT--AAACAATAAGAGTGAGG  944

seq1  TCCAGACATGTCACCCTGGACATCTCATCTCGAGACTGGCAGGAG  986
      | || || ||  |||||||||||||| ||||| |||||| |||||
seq2  T-CAAAC-TGGTACCCTGGACATCTCTTCTCG-GACTGGTAGGAG  986