BAC Information

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BAC

Clone NameB6Ng01-022O12
Chromosome13 (Build37)
Map Location 20,119,044 - 20,263,657
singlet/doubletdoublet
Overlap genenone
Upstream geneAmph, LOC624044, Tcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141, LOC432730
Downstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022O12.bB6Ng01-022O12.g
ACCDH854979DH854980
length755975
definitionDH854979|Mus musculus domesticus DNA, BAC clone: B6Ng01-022O12, 5' end.DH854980|Mus musculus domesticus DNA, BAC clone: B6Ng01-022O12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,262,904 - 20,263,657)(20,119,044 - 20,120,026)
sequence
gaattctgtatccagggaaacaaaaggtggttctcccagacttgtggagg
agggagatgctacagttgatggaagcccagcatccagctttcataagagt
acaaatagttgtgtcctctcctagatgggactattccagacagaacttgg
actcttaagacaatatgatgaccagagtcaacaggggcagggactctctt
ggagaacctgtggacaagtccaagcagttagtataagacctcactctcag
gctgaagagatggctcagtggttaagaacactggctacttgctcttccag
aggtcctgagttcaattcccagcaatcacatagtggctcacaaccatctg
taaagggatccgtgcactcttctggtgtgtctgaagacagctacagttgt
ctgaaataaatagatccttaaaaataaataaacaaacaaacaaacagata
aataaatcctttttttaaaaaaaaggacctccgtctcactgtcctcttcc
cagtgacgttgctgttctgctgtaggttgcatgcaaaggcatggccattt
cctcctcagtcagcaaaaaagcaaaggacagccagtaacagccacagact
ggactcaacctgtctctccttccccctcctccttctcctctccctcattc
tcctcctcttcttcctcctcctgcccataatcatcttcctccttcctcct
ggttttttgttttttgggttttttggtgggtttttttgtttgtttttggt
ttttt
gaattctgttgcagtaatagaaagtcaagaactgctggaatttgctgtgg
aagatcaaagcttgggctctgaaccactaactatgactaaggtataaaaa
atcagatgataatggccaaaggccatggtcataaagccactggccagctc
agcatggctgagatgtaactcttccaggatacagcctctgtcagcgcacc
agtctgacagtgttagttcaatttgttccattccgaccctgccagcatca
acagtgagaaaagtgctctgttcctttgcttgtgtttacataagcagtag
atgtgtagcatgagaacatcacctctccagtgactgcagggacttgcaga
aagaaagagcaaaagaaatcaacagctagatattagaaatgcagcctgta
acaaagactgtagactgagtgcaaacataatgccagcttaggaaaggcaa
tcaacggacatccacctggaggccaggggtcggctggggtgggatgttag
tgccagggaggtggcgaaatgaaggagaacttatctgtgctgctgtagct
agtactacactacactgaactgctaggatccatgccagctgtcaataccc
acataaaaatgagtgtgttttcctcctgttgtttggctgttagagatacc
tgtgcatagtaaaagcatggtgtggctttagcttgtccgcagtcatcctt
ttagacaatcagacaaatctccagttttgaagaatctcaggttcccttca
aagtcttgcctgaatgagacaccaccaattgataagtacaagcatatgct
cctgccataagtggggtcacacgctaagtaagtatgatatctccaagagg
aggagaacacagacatcgaagttccatgtgacattcgttattatgtgata
catgatataacaggcactgagaaatgtgggcatgtgtgtcacttaatctt
ctctgagagccactctttagaggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_20262904_20263657
seq2: B6Ng01-022O12.b_45_799 (reverse)

seq1  AAAAAACCAAAAACAAAC-AAAAAACCCACCAAAAAACCCAAAAAACAAA  49
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAAAAACCAAAAACAAACAAAAAAACCCACCAAAAAACCCAAAAAACAAA  50

seq1  AAACCAGGAGGAAGGAGGAAGATGATTATGGGCAGGAGGAGGAAGAAGAG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGGAGGAAGGAGGAAGATGATTATGGGCAGGAGGAGGAAGAAGAG  100

seq1  GAGGAGAATGAGGGAGAGGAGAAGGAGGAGGGGGAAGGAGAGACAGGTTG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAATGAGGGAGAGGAGAAGGAGGAGGGGGAAGGAGAGACAGGTTG  150

seq1  AGTCCAGTCTGTGGCTGTTACTGGCTGTCCTTTGCTTTTTTGCTGACTGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGTCTGTGGCTGTTACTGGCTGTCCTTTGCTTTTTTGCTGACTGA  200

seq1  GGAGGAAATGGCCATGCCTTTGCATGCAACCTACAGCAGAACAGCAACGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAATGGCCATGCCTTTGCATGCAACCTACAGCAGAACAGCAACGT  250

seq1  CACTGGGAAGAGGACAGTGAGACGGAGGTCCTTTTTTTTAAAAAAAGGAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGAAGAGGACAGTGAGACGGAGGTCCTTTTTTTTAAAAAAAGGAT  300

seq1  TTATTTATCTGTTTGTTTGTTTGTTTATTTATTTTTAAGGATCTATTTAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATCTGTTTGTTTGTTTGTTTATTTATTTTTAAGGATCTATTTAT  350

seq1  TTCAGACAACTGTAGCTGTCTTCAGACACACCAGAAGAGTGCACGGATCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACAACTGTAGCTGTCTTCAGACACACCAGAAGAGTGCACGGATCC  400

seq1  CTTTACAGATGGTTGTGAGCCACTATGTGATTGCTGGGAATTGAACTCAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACAGATGGTTGTGAGCCACTATGTGATTGCTGGGAATTGAACTCAG  450

seq1  GACCTCTGGAAGAGCAAGTAGCCAGTGTTCTTAACCACTGAGCCATCTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCTGGAAGAGCAAGTAGCCAGTGTTCTTAACCACTGAGCCATCTCT  500

seq1  TCAGCCTGAGAGTGAGGTCTTATACTAACTGCTTGGACTTGTCCACAGGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTGAGAGTGAGGTCTTATACTAACTGCTTGGACTTGTCCACAGGT  550

seq1  TCTCCAAGAGAGTCCCTGCCCCTGTTGACTCTGGTCATCATATTGTCTTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAAGAGAGTCCCTGCCCCTGTTGACTCTGGTCATCATATTGTCTTA  600

seq1  AGAGTCCAAGTTCTGTCTGGAATAGTCCCATCTAGGAGAGGACACAACTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCCAAGTTCTGTCTGGAATAGTCCCATCTAGGAGAGGACACAACTA  650

seq1  TTTGTACTCTTATGAAAGCTGGATGCTGGGCTTCCATCAACTGTAGCATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACTCTTATGAAAGCTGGATGCTGGGCTTCCATCAACTGTAGCATC  700

seq1  TCCCTCCTCCACAAGTCTGGGAGAACCACCTTTTGTTTCCCTGGATACAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCTCCACAAGTCTGGGAGAACCACCTTTTGTTTCCCTGGATACAG  750

seq1  AATTC  754
      |||||
seq2  AATTC  755

seq1: chr13_20119044_20120026
seq2: B6Ng01-022O12.g_69_1043

seq1  GAATTCTGTTGCAGTAATAGAAAGTCAAGAACTGCTGGAATTTGCTGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTGCAGTAATAGAAAGTCAAGAACTGCTGGAATTTGCTGTGG  50

seq1  AAGATCAAAGCTTGGGCTCTGAACCACTAACTATGACTAAGGTATAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCAAAGCTTGGGCTCTGAACCACTAACTATGACTAAGGTATAAAAA  100

seq1  ATCAGATGATAATGGCCAAAGGCCATGGTCATAAAGCCACTGGCCAGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATGATAATGGCCAAAGGCCATGGTCATAAAGCCACTGGCCAGCTC  150

seq1  AGCATGGCTGAGATGTAACTCTTCCAGGATACAGCCTCTGTCAGCGCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGCTGAGATGTAACTCTTCCAGGATACAGCCTCTGTCAGCGCACC  200

seq1  AGTCTGACAGTGTTAGTTCAATTTGTTCCATTCCGACCCTGCCAGCATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGACAGTGTTAGTTCAATTTGTTCCATTCCGACCCTGCCAGCATCA  250

seq1  ACAGTGAGAAAAGTGCTCTGTTCCTTTGCTTGTGTTTACATAAGCAGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGAGAAAAGTGCTCTGTTCCTTTGCTTGTGTTTACATAAGCAGTAG  300

seq1  ATGTGTAGCATGAGAACATCACCTCTCCAGTGACTGCAGGGACTTGCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTAGCATGAGAACATCACCTCTCCAGTGACTGCAGGGACTTGCAGA  350

seq1  AAGAAAGAGCAAAAGAAATCAACAGCTAGATATTAGAAATGCAGCCTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAGCAAAAGAAATCAACAGCTAGATATTAGAAATGCAGCCTGTA  400

seq1  ACAAAGACTGTAGACTGAGTGCAAACATAATGCCAGCTTAGGAAAGGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGACTGTAGACTGAGTGCAAACATAATGCCAGCTTAGGAAAGGCAA  450

seq1  TCAACGGACATCCACCTGGAGGCCAGGGGTCGGCTGGGGTGGGATGTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACGGACATCCACCTGGAGGCCAGGGGTCGGCTGGGGTGGGATGTTAG  500

seq1  TGCCAGGGAGGTGGCGAAATGAAGGAGAACTTATCTGTGCTGCTGTAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGGAGGTGGCGAAATGAAGGAGAACTTATCTGTGCTGCTGTAGCT  550

seq1  AGTACTACACTACACTGAACTGCTAGGATCCATGCCAGCTGTCAATACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTACACTACACTGAACTGCTAGGATCCATGCCAGCTGTCAATACCC  600

seq1  ACATAAAAATGAGTGTGTTTTCCTCCTGTTGTTTGGCTGTTAGAGATACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAAATGAGTGTGTTTTCCTCCTGTTGTTTGGCTGTTAGAGATACC  650

seq1  TGTGCATAGTAAAAGCATGGTGTGGCTTTAGCTTGTCCGCAGTCATCC-T  699
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGTGCATAGTAAAAGCATGGTGTGGCTTTAGCTTGTCCGCAGTCATCCTT  700

seq1  TTAGACAATCAGACAAATCTCCAGTTTTGAAGAATCTCAGGTTCCCTTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACAATCAGACAAATCTCCAGTTTTGAAGAATCTCAGGTTCCCTTCA  750

seq1  AAGTCTTGCCTGAATGAGACACCACCAATTGATAAGTACAAGCATATGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTGCCTGAATGAGACACCACCAATTGATAAGTACAAGCATATGCT  800

seq1  CCTGCCATAAGTGGGGTCACACGCTAAGTAAGTATGATATCTCCAAGAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCATAAGTGGGGTCACACGCTAAGTAAGTATGATATCTCCAAGAGG  850

seq1  AGGAGAAACACAGACAATCGAAGTTCCATGTGACATTCGTTATTATGTGA  899
      ||||| ||||||||| ||||||||||||||||||||||||||||||||| 
seq2  AGGAG-AACACAGAC-ATCGAAGTTCCATGTGACATTCGTTATTATGTG-  897

seq1  ATACATGAAAATTAACAGGCACTTGAGAAAGTGTGGGCATGTGTGTCACT  949
      |||||||| |  |||||||||| ||||||| |||||||||||||||||||
seq2  ATACATGATA--TAACAGGCAC-TGAGAAA-TGTGGGCATGTGTGTCACT  943

seq1  TAATCTTCTCTGGAGAGCCACTCTTATAGAGGTG  983
      ||||||||||| ||||||||||||| ||||||||
seq2  TAATCTTCTCT-GAGAGCCACTCTT-TAGAGGTG  975