BAC Information

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BAC

Clone NameB6Ng01-023E06
Chromosome13 (Build37)
Map Location 113,596,902 - 113,716,867
singlet/doubletdoublet
Overlap genePpap2a, LOC100041282, Skiv2l2
Upstream geneMap3k1, LOC668181, LOC100040716, LOC100041161, LOC100041175, Ankrd55, LOC100040725, Il6st, Il31ra, LOC100041240, Ddx4, 9130023D20Rik
Downstream geneDhx29, LOC667756, Ccnu, EG622408, EG622422, 2310016C16Rik, Cdc20b, Gzma, 1700084D21Rik, Gzmk, Esm1, BC067074, LOC100040888, Snag1, Hspb3, EG632832, LOC622701, LOC100040927, Arl15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023E06.bB6Ng01-023E06.g
ACCDH855233DH855234
length1,013956
definitionDH855233|Mus musculus domesticus DNA, BAC clone: B6Ng01-023E06, 5' end.DH855234|Mus musculus domesticus DNA, BAC clone: B6Ng01-023E06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,596,902 - 113,597,922)(113,715,912 - 113,716,867)
sequence
gaattcaggtttccttaccatgacccaaataaagcatcattgtgccaaaa
cacagtaagtatagattaaaatctgatgacggaaacagacggcaggctgt
tataaattctcgttacttgttccctaaattctggtgtctgatccatcacc
ataaaaggatgctgacctccttttgcccctgttaagatgtccctaagtag
ccatctttttgctcatctccaagacgggttgctttcaaaaacaaacaaac
aaacaaacaaacaaacacgcaaatcatctggctgcatagtctaacccact
tttgtgccttcttcccctttctcctaaaattgatccattcattcacgtct
ttcatacatttgctggtagctgaataggtcctgtcttttgcttctgatga
aagttggctgggttcgtttccttaacttttctctgtgtttccatatagaa
ggagagaaagagtctcagcagatgaacagacgtttgtcaagctgcgcgtg
cttgtgccagattaagatggtggtgtttctctcgtcttggatgggtagcg
tggaacaggagtagaggctggaggcactgctattttttggtgccccgctt
ggttccatgcggttgagttggctttcatgaaatgtgcctcacttggactc
cacgatggaaatgtttagagagctttccccatatatgttttacgaactgt
gaattctttattatttttttttatattctctttgaactccatccttttgg
aaacacagagacatgttatgaagcttattaatcccattctcacttagtca
tttttggcagagctctacagaagtgtctgagatgtttggggaattactct
gattttaaaattgaggttttgctattgaaatgtgaggttgttggtattac
caagagacggagatgctggaaacaataggcgaggaaacactcggattcag
gagactggtagcgtagcatgtagttcaattttgtggaaaggatttgaatt
tttaaaatatttt
gaattcccagagtgcccctatgacactcggtcaaactagttttctcttcc
gttagcgttttacacttgatgattgattcggtccgttattacatgagtag
ttgcaaagtactggtttaaaaaaaaaaaaaagctatgtctttctgcttct
tacctggaatccagtcataaattaattaatttaaaaaatcattgctctag
ggctgaggacatggccagtgtaaaagacagctttctgtttgagaatgagg
acctagtttcaaatctctagtacccacataaaaagtgtgagcactgtaac
cccagcacagtggggcacagagacaaaaattgttgggcctggctggttgc
taacttagcctcttggttgtataagtgagaaacgctgtctcaagggagta
atgtaggatgctggaagtcctctggcctccactgtatgctcaagtgtagg
cgccacacaaagaagacacagaatttcccttattgtcagttaccttcagt
tctcaagttgaggaatttccttcaccacactgacccttggacaagtcttt
ggagcattttcttaattgctgatttatgtgggagggcagcccagtgcgct
atggtgtgtaccttcctgggcaggtgagcctgcactgggtgatggagcta
tagaaacccgtgagcagcatttctgtggtctctgcctccgagttcccatt
ttcgcttttctgagtgatggattgtaaacacatcagctgaattaagtcct
tttcctgtctaagttgcttgtggtcagtgtttttatttatttttattttg
tattattattattattattattgttttttgttttttgttttttgagacag
ggttttctctatagccctgggctgtcctggaactcacttttgagaccagg
ttggcttcgatttcagaaatccacctgcctctgcctccgagtgctgggat
taaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_113596902_113597922
seq2: B6Ng01-023E06.b_40_1052

seq1  GAATTCAGGTTTCCTTACCATGACCCAAATAAAGCATCATTGTGCCAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTTTCCTTACCATGACCCAAATAAAGCATCATTGTGCCAAAA  50

seq1  CACAGTAAGTATAGATTAAAATCTGATGACGGAAACAGACGGCAGGCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTAAGTATAGATTAAAATCTGATGACGGAAACAGACGGCAGGCTGT  100

seq1  TATAAATTCTCGTTACTTGTTCCCTAAATTCTGGTGTCTGATCCATCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATTCTCGTTACTTGTTCCCTAAATTCTGGTGTCTGATCCATCACC  150

seq1  ATAAAAGGATGCTGACCTCCTTTTGCCCCTGTTAAGATGTCCCTAAGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGGATGCTGACCTCCTTTTGCCCCTGTTAAGATGTCCCTAAGTAG  200

seq1  CCATCTTTTTGCTCATCTCCAAGACGGGTTGCTTTCAAAAACAAACAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTTTTGCTCATCTCCAAGACGGGTTGCTTTCAAAAACAAACAAAC  250

seq1  AAACAAACAAACAAACACGCAAATCATCTGGCTGCATAGTCTAACCCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAACAAACACGCAAATCATCTGGCTGCATAGTCTAACCCACT  300

seq1  TTTGTGCCTTCTTCCCCTTTCTCCTAAAATTGATCCATTCATTCACGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGCCTTCTTCCCCTTTCTCCTAAAATTGATCCATTCATTCACGTCT  350

seq1  TTCATACATTTGCTGGTAGCTGAATAGGTCCTGTCTTTTGCTTCTGATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACATTTGCTGGTAGCTGAATAGGTCCTGTCTTTTGCTTCTGATGA  400

seq1  AAGTTGGCTGGGTTCGTTTCCTTAACTTTTCTCTGTGTTTCCATATAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGGCTGGGTTCGTTTCCTTAACTTTTCTCTGTGTTTCCATATAGAA  450

seq1  GGAGAGAAAGAGTCTCAGCAGATGAACAGACGTTTGTCAAGCTGCGCGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAAAGAGTCTCAGCAGATGAACAGACGTTTGTCAAGCTGCGCGTG  500

seq1  CTTGTGCCAGATTAAGATGGTGGTGTTTCTCTCGTCTTGGATGGGTAGCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGCCAGATTAAGATGGTGGTGTTTCTCTCGTCTTGGATGGGTAGCG  550

seq1  TGGAACAGGAGTAGAGGCTGGAGGCACTGCTATTTTTTGGTGCCCCGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACAGGAGTAGAGGCTGGAGGCACTGCTATTTTTTGGTGCCCCGCTT  600

seq1  GGTTCCATGCGGTTGAGTTGGCTTTCATGAAATGTGCCTCACTTGGACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCATGCGGTTGAGTTGGCTTTCATGAAATGTGCCTCACTTGGACTC  650

seq1  CACGATGGAAATGTTTAGAGAGCTTTCCCCATATATGTTTTACGAACTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGATGGAAATGTTTAGAGAGCTTTCCCCATATATGTTTTACGAACTGT  700

seq1  GAATTCTTTATTATTTTTTTTTATATTCTCTTTGAACTCCATCCTTTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATTATTTTTTTTTATATTCTCTTTGAACTCCATCCTTTTGG  750

seq1  AAACACAGAGACATGTTATGAAGCTTATTAATCCCATTCTCACTTAGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAGAGACATGTTATGAAGCTTATTAATCCCATTCTCACTTAGTCA  800

seq1  TTTTTGGCAGAGCTCTACAGAAGTGTCTGAGATGTTTGGGGAATTACTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGCAGAGCTCTACAGAAGTGTCTGAGATGTTTGGGGAATTACTCT  850

seq1  GATTTTAAAAATTGAGGTTTTGCTATTGAAATGTGAGGTTGTTGGTATTT  900
      |||||| |||||||||||||||||||||||||||||||||||||||| ||
seq2  GATTTT-AAAATTGAGGTTTTGCTATTGAAATGTGAGGTTGTTGGTA-TT  898

seq1  ACCAAGAGACGGAGATGCTGGAAAC-ATAGGCGAGGAAACACTCGGATTC  949
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACCAAGAGACGGAGATGCTGGAAACAATAGGCGAGGAAACACTCGGATTC  948

seq1  AGGCAGACTGGTTAGCGTAGCATGTAGTTTCAATTTTTGTGGAAGGAATT  999
      ||| ||||||| ||||||||||||||| ||||| |||||||||| | |||
seq2  AGG-AGACTGG-TAGCGTAGCATGTAG-TTCAA-TTTTGTGGAAAGGATT  994

seq1  TAGATTTTTTAAAAATTATTTT  1021
      | || |||||||||  ||||||
seq2  T-GAATTTTTAAAA--TATTTT  1013

seq1: chr13_113715912_113716867
seq2: B6Ng01-023E06.g_67_1022 (reverse)

seq1  CCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCG  50
      |||||||||||||||||| ||||||||||||||||||||||||||  |||
seq2  CCTTTAATCCCAGCACTC-GGAGGCAGAGGCAGGTGGATTTCTGAAATCG  49

seq1  AGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAG-CCAGGGCTATAGA  99
      | |||| ||||||||  ||||||||||||||||||| |||||||||||||
seq2  AAGCCAACCTGGTCTCAAAAGTGAGTTCCAGGACAGCCCAGGGCTATAGA  99

seq1  G-AAACCCTGTCTCAAAAAAACAAAAAACAAAAAACAATAATAATAATAA  148
      | |||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAAAACCCTGTCTC-AAAAAACAAAAAACAAAAAACAATAATAATAATAA  148

seq1  TAATAATAACAAAATAAAAATAAATAAAAACACTGACCACAAGCAACTTA  198
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAT-ACAAAATAAAAATAAATAAAAACACTGACCACAAGCAACTTA  197

seq1  GACAGG-AAAGGACTTAATTCAGCTGATGTGTTTACAATCCATCACTCAG  247
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGAAAAGGACTTAATTCAGCTGATGTGTTTACAATCCATCACTCAG  247

seq1  AAAAGCGAAAATGGGAACTCGGAGGCAGAGACCACAGAAATGCTGCTCAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCGAAAATGGGAACTCGGAGGCAGAGACCACAGAAATGCTGCTCAC  297

seq1  GGGTTTCTATAGCTCCATCACCCAGTGCAGGCTCACCTGCCCAGGAAGGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCTATAGCTCCATCACCCAGTGCAGGCTCACCTGCCCAGGAAGGT  347

seq1  ACACACCATAGCGCACTGGGCTGCCCTCCCACATAAATCAGCAATTAAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCATAGCGCACTGGGCTGCCCTCCCACATAAATCAGCAATTAAGA  397

seq1  AAATGCTCCAAAGACTTGTCCAAGGGTCAGTGTGGTGAAGGAAATTCCTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTCCAAAGACTTGTCCAAGGGTCAGTGTGGTGAAGGAAATTCCTC  447

seq1  AACTTGAGAACTGAAGGTAACTGACAATAAGGGAAATTCTGTGTCTTCTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGAGAACTGAAGGTAACTGACAATAAGGGAAATTCTGTGTCTTCTT  497

seq1  TGTGTGGCGCCTACACTTGAGCATACAGTGGAGGCCAGAGGACTTCCAGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGCGCCTACACTTGAGCATACAGTGGAGGCCAGAGGACTTCCAGC  547

seq1  ATCCTACATTACTCCCTTGAGACAGCGTTTCTCACTTATACAACCAAGAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTACATTACTCCCTTGAGACAGCGTTTCTCACTTATACAACCAAGAG  597

seq1  GCTAAGTTAGCAACCAGCCAGGCCCAACAATTTTTGTCTCTGTGCCCCAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGTTAGCAACCAGCCAGGCCCAACAATTTTTGTCTCTGTGCCCCAC  647

seq1  TGTGCTGGGGTTACAGTGCTCACACTTTTTATGTGGGTACTAGAGATTTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGGGGTTACAGTGCTCACACTTTTTATGTGGGTACTAGAGATTTG  697

seq1  AAACTAGGTCCTCATTCTCAAACAGAAAGCTGTCTTTTACACTGGCCATG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGGTCCTCATTCTCAAACAGAAAGCTGTCTTTTACACTGGCCATG  747

seq1  TCCTCAGCCCTAGAGCAATGATTTTTTAAATTAATTAATTTATGACTGGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGCCCTAGAGCAATGATTTTTTAAATTAATTAATTTATGACTGGA  797

seq1  TTCCAGGTAAGAAGCAGAAAGACATAGCTTTTTTTTTTTTTTAAACCAGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGTAAGAAGCAGAAAGACATAGCTTTTTTTTTTTTTTAAACCAGT  847

seq1  ACTTTGCAACTACTCATGTAATAACGGACCGAATCAATCATCAAGTGTAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCAACTACTCATGTAATAACGGACCGAATCAATCATCAAGTGTAA  897

seq1  AACGCTAACGGAAGAGAAAACTAGTTTGACCGAGTGTCATAGGGGCACTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCTAACGGAAGAGAAAACTAGTTTGACCGAGTGTCATAGGGGCACTC  947

seq1  TGGGAATTC  956
      |||||||||
seq2  TGGGAATTC  956