BAC Information

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BAC

Clone NameB6Ng01-023H05
Chromosome13 (Build37)
Map Location 22,338,074 - 22,339,060
singlet/doubletsinglet
Overlap genenone
Upstream geneGpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480
Downstream geneV1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023H05.g
ACCDH855368
length975
definitionDH855368|Mus musculus domesticus DNA, BAC clone: B6Ng01-023H05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttggccagtccctaagtttcaccagtaattgcttctgagataat
aaacaattattctattacttagagcacattccaaaagattgtaaaaccat
taaccaaatgtcttaaaaggggaattaataatttattacaggtggtagaa
cagaatataaagcatttactggatttatctatataaatttcagtcatagc
ttagttatggtttttaattgttcaatttaatttaaattgttcaatttatg
atttgaatttatgtgtaaacctgtgataaactttttaccatgtgatcatg
tattcggaaagatgtataagtgctgagtacaagagaagaggggcacagct
ccttatccccttttcttagcaattctccttgttcctacttttcttggcat
tattctccttatgttcctcttcttagcactccttatcctctttttcttag
atcccacctattcccttttcctagatcccttatctcccttttcttatgag
cctgtttccccttttttcttcgaagctttcataggaaactttttacaact
tagagataaatactaaaatcactttcaaaagtgtccctttttcttttcca
ttttttattaggtatttagctcatttatatttccaatgctataccaaaag
tcccccatacccacccacccccactcccctatccacccactccccctttt
tggccctggcgttttcctgtactggggcatataaagtttgcaagtccaat
gggcctctctttgcagtgatggtcgactaggccatcttttggatacatat
gcagctagagacaagagctccggggtactgctaattcaaatggttgtttc
ccctatagggtgcagttccctttagttcctgggtgctttctctattcctc
cttgggggcctgtggccattaatagctgatgtgagcatctcttctgtgtt
tcaaggccctgcatatctcacaaga
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_22338074_22339060
seq2: B6Ng01-023H05.g_67_1041

seq1  GAATTCTTGGCCAGTCCCTAAGTTTCACCAGTAATTGCTTCTGAGATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGCCAGTCCCTAAGTTTCACCAGTAATTGCTTCTGAGATAAT  50

seq1  AAACAATTATTCTATTACTTAGAGCACATTCCAAAAGATTGTAAAACCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATTATTCTATTACTTAGAGCACATTCCAAAAGATTGTAAAACCAT  100

seq1  TAACCAAATGTCTTAAAAGGGGAATTAATAATTTATTACAGGTGGTAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAAATGTCTTAAAAGGGGAATTAATAATTTATTACAGGTGGTAGAA  150

seq1  CAGAATATAAAGCATTTACTGGATTTATCTATATAAATTTCAGTCATAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATATAAAGCATTTACTGGATTTATCTATATAAATTTCAGTCATAGC  200

seq1  TTAGTTATGGTTTTTAATTGTTCAATTTAATTTAAATTGTTCAATTTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTATGGTTTTTAATTGTTCAATTTAATTTAAATTGTTCAATTTATG  250

seq1  ATTTGAATTTATGTGTAAACCTGTGATAAACTTTTTACCATGTGATCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAATTTATGTGTAAACCTGTGATAAACTTTTTACCATGTGATCATG  300

seq1  TATTCGGAAAGATGTATAAGTGCTGAGTACAAGAGAAGAGGGGCACAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCGGAAAGATGTATAAGTGCTGAGTACAAGAGAAGAGGGGCACAGCT  350

seq1  CCTTATCCCCTTTTCTTAGCAATTCTCCTTGTTCCTACTTTTCTTGGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATCCCCTTTTCTTAGCAATTCTCCTTGTTCCTACTTTTCTTGGCAT  400

seq1  TATTCTCCTTATGTTCCTCTTCTTAGCACTCCTTATCCTCTTTTTCTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCCTTATGTTCCTCTTCTTAGCACTCCTTATCCTCTTTTTCTTAG  450

seq1  ATCCCACCTATTCCCTTTTCCTAGATCCCTTATCTCCCTTTTCTTATGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCACCTATTCCCTTTTCCTAGATCCCTTATCTCCCTTTTCTTATGAG  500

seq1  CCTGTTTCCCCTTTTTTCTTCGAAGCTTTCATAGGAAACTTTTTACAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTCCCCTTTTTTCTTCGAAGCTTTCATAGGAAACTTTTTACAACT  550

seq1  TAGAGATAAATACTAAAATCACTTTCAAAAGTGTCCCTTTTTCTTTTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATAAATACTAAAATCACTTTCAAAAGTGTCCCTTTTTCTTTTCCA  600

seq1  TTTTTTATTAGGTATTTAGCTCATTTATATTTCCAATGCTATACCAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATTAGGTATTTAGCTCATTTATATTTCCAATGCTATACCAAAAG  650

seq1  TCCCCCATACCCACCCACCCCCACTCCCCTATCCACCCACTCCCCCTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCATACCCACCCACCCCCACTCCCCTATCCACCCACTCCCCCTTTT  700

seq1  TGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAAT  750
      |||||||||||||  |||||||||||||||||||||||||||||||||||
seq2  TGGCCCTGGCGTTTTCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAAT  750

seq1  GGGCCTCTCTTTGCAGTGATGGCCGACTAGGCCATCTTTT-GATACATAT  799
      |||||||||||||||||||||| ||||||||||||||||| |||||||||
seq2  GGGCCTCTCTTTGCAGTGATGGTCGACTAGGCCATCTTTTGGATACATAT  800

seq1  GCAGCTAGAGACAAGAGCTCCGGGGTACTGCTTAGTTCATATTGTTGTTC  849
      ||||||||||||||||||||||||||||||| || |||| || |||||| 
seq2  GCAGCTAGAGACAAGAGCTCCGGGGTACTGC-TAATTCAAATGGTTGTTT  849

seq1  CACCTATAGGGTTGCAGTTCCCTTTAGTTCCTTGGGTGCTTTCTCTAGTT  899
      | ||||||||| ||||||||||||||||||| ||||||||||||||| ||
seq2  CCCCTATAGGG-TGCAGTTCCCTTTAGTTCC-TGGGTGCTTTCTCTA-TT  896

seq1  CCTCCATTGGGGGCCCTGTGGTCCATTCAATAGCTGACTGTGAGCATCCA  949
      ||||| ||||||| ||||||| ||||| ||||||||| ||||||||| | 
seq2  CCTCC-TTGGGGG-CCTGTGG-CCATT-AATAGCTGA-TGTGAGCAT-CT  940

seq1  CTTCTGTGTTTGCTAGGCCCTGGCATAGTCTCACAAGA  987
      ||||||||||| | ||||||| ||||| ||||||||||
seq2  CTTCTGTGTTT-CAAGGCCCT-GCATA-TCTCACAAGA  975