BAC Information

Click to search

BAC

Clone NameB6Ng01-023J21
Chromosome13 (Build37)
Map Location 55,740,644 - 55,862,865
singlet/doubletdoublet
Overlap geneDdx46, B230219D22Rik, 2310047H23Rik, Pcbd2
Upstream geneUbxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17, Unc5a, Hk3, Uimc1, LOC622707, Zfp346, Fgfr4, Nsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml
Downstream geneCatsper3, Pitx1, H2afy, BC027057, Neurog1, Cxcl14, LOC100040926, AU042651, Il9, Fbxl21, Lect2, Tgfbi, Smad5, EG627415
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023J21.bB6Ng01-023J21.g
ACCDH855488DH855489
length1,0181,150
definitionDH855488|Mus musculus domesticus DNA, BAC clone: B6Ng01-023J21, 5' end.DH855489|Mus musculus domesticus DNA, BAC clone: B6Ng01-023J21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,861,847 - 55,862,865)(55,740,644 - 55,741,802)
sequence
gaattccaccctcaaaatcatttacagtgaagcaaaggcggattcaacca
gcacaatgtggaccaggtgtagtggtaggaaccacagcctctcagctggc
tttgggttttaatgtcagcaaagaaagtaattcttttttttttttttaaa
ttatgatgagacttactatgagccaaatttttacaaatgcctcaatcatg
cctcttgtaatgcttacaggggacgcatgatttgattaaccagatgccca
agctaaccactgtcttctgcagtgaagaatcctggtagaagacagacaaa
cagttgggcacggcctggccgtgttcctgtctggttcacagctacagttg
agtcgcacacttcaaattccaggctttctcggaggcctgcttcccttcac
cctccaaacacaggagagcccacgggcaccaggtttctgggaggaggtga
ggaaagggtttagagtttcatgagtgaaagaaaaagtgcgggggttgcgc
aggcgccgccgccgggcagataacgagtcactgagaatatctgaagtcag
aatgaaatgcttgtctgcccgaatctttataaacgtggttggggaagagg
aaaacagacaatagtcctagggtggtttcaaatgttgctttcaaagcttt
ccacgctccattggaaacagctctgcctcacaggccgttctggtcggccc
tgccaaggaaacggtctgatgcactttattacaagtttatcaatgtgctt
tacccaggcaaatacacataataacctctgcccaaaaagaccagtgtgaa
acagctctgccatagaatcactggatcgatgaaacacaacggagtaagac
aggacgtcgatgccctgcctgcttccccatcccagctccactgtggtcca
catgacatcaccacccagtcctgcctggagctcacttccttcccatcacc
acagattgactgtcacaggtatctggtgcaggatagagaaatagggtggg
gcatctctatttttcaca
gaattcttcatattgtctagttgaggaacttgggatccagggagttgggg
gtctgccctctgtcacgtggtaactagcagctctaggggagaagtgtcac
ctcttagtcttaagattctgatctttgagccaggtctgtctgtgtcctta
tgaaggcccaggcctcccctcggcaacacttcccccttgctgagattagg
agtttgattagctcagccagtgaccagggctgagctgcagctctagctgg
agactgcctgaaatttaaagtatctgttacagcctgctgtgttagctaag
gtcactatgggaactagtgtcctcccatttccctcgattctcgtgggaac
tggcgtcccttgtttcctgtttggctgatttggtagctaagtgaggctct
gtaaggcctcagcagtgatcataattgtaaggccttttcgggttgggaca
gtcacggtctgcagtaattctctttggccacaaaataaaagaaaactctt
cccgtcaggcgctccagaagtagagagcgagacagaagccgagagcggag
aagatctcggagcagagatagaaggcgctcaaggagtcgaagccggggca
ggcggtcccggtcctccagtcctggcagcaaaaccaagaagactgagaac
aggtaacgccgtcctcagactgcgcctgctgctacaggctttgacgctcg
ctgggaagtgttggcagagtgtttattaggctgtggggcttatgtttcag
ttgagaatagcagattctattgtttttacactccacactgaactctttat
ttcttatttattaacggtcagaacttctgttatcatcttttgtggggcag
tgactattgtctcagcatgctggtcaccatttgagtaagccctctgtatt
cagctcatccttggcctcagtttgtttttttttttctttgaagattcttt
tttctgatagtagatattggttgacacttttcaagatttctttttattga
tttattgcatgcctgtgtagggtgtgtacaggcgctaggtgccagtgaag
caagagcctcgaattctcagactgaggtacaggatttattttcactttag
aacctggcaattctattggtttggtttttggtttttgacttttttttttt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_55861847_55862865
seq2: B6Ng01-023J21.b_41_1058 (reverse)

seq1  TGTGAAAAATAGAGATGCCACCACCTATATCCTCTATTCCTGCA-CAGAT  49
      ||||||||||||||||||| |  ||||| | ||||| ||||||| |||||
seq2  TGTGAAAAATAGAGATGCCCCACCCTAT-TTCTCTA-TCCTGCACCAGAT  48

seq1  ACCTGTGACAGTCAATCTGTGGTGATGGGGAAGGAAGTGAGCTCCAGGCA  99
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACCTGTGACAGTCAATCTGTGGTGAT-GGGAAGGAAGTGAGCTCCAGGCA  97

seq1  GGACTGGGTGGTGATGTCATGTGGACCACAGTGGAGCTGGGATGGGGAAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGGGTGGTGATGTCATGTGGACCACAGTGGAGCTGGGATGGGGAAG  147

seq1  CAGGCAGGGCATCGACGTCCTGTCTTACTCCGTTGTGTTTCATCGATCCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGGGCATCGACGTCCTGTCTTACTCCGTTGTGTTTCATCGATCCA  197

seq1  GTGATTCTATGGCAGAGCTGTTTCACACTGGTCTTTTTGGGCAGAGGTTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTCTATGGCAGAGCTGTTTCACACTGGTCTTTTTGGGCAGAGGTTA  247

seq1  TTATGTGTATTTGCCTGGGT-AAGCACATTGATAAACTTGTAATAAAGTG  298
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTATGTGTATTTGCCTGGGTAAAGCACATTGATAAACTTGTAATAAAGTG  297

seq1  CATCAGACCGTTTCCTTGGCAGGGCCGACCAGAACGGCCTGTGAGGCAGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGACCGTTTCCTTGGCAGGGCCGACCAGAACGGCCTGTGAGGCAGA  347

seq1  GCTGTTTCCAATGGAGCGTGGAAAGCTTTGAAAGCAACATTTGAAACCAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTCCAATGGAGCGTGGAAAGCTTTGAAAGCAACATTTGAAACCAC  397

seq1  CCTAGGACTATTGTCTGTTTTCCTCTTCCCCAACCACGTTTATAAAGATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGACTATTGTCTGTTTTCCTCTTCCCCAACCACGTTTATAAAGATT  447

seq1  CGGGCAGACAAGCATTTCATTCTGACTTCAGATATTCTCAGTGACTCGTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCAGACAAGCATTTCATTCTGACTTCAGATATTCTCAGTGACTCGTT  497

seq1  ATCTGCCCGGCGGCGGCGCCTGCGCAACCCCCGCACTTTTTCTTTCACTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCCCGGCGGCGGCGCCTGCGCAACCCCCGCACTTTTTCTTTCACTC  547

seq1  ATGAAACTCTAAACCCTTTCCTCACCTCCTCCCAGAAACCTGGTGCCCGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACTCTAAACCCTTTCCTCACCTCCTCCCAGAAACCTGGTGCCCGT  597

seq1  GGGCTCTCCTGTGTTTGGAGGGTGAAGGGAAGCAGGCCTCCGAGAAAGCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCTCCTGTGTTTGGAGGGTGAAGGGAAGCAGGCCTCCGAGAAAGCC  647

seq1  TGGAATTTGAAGTGTGCGACTCAACTGTAGCTGTGAACCAGACAGGAACA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTTGAAGTGTGCGACTCAACTGTAGCTGTGAACCAGACAGGAACA  697

seq1  CGGCCAGGCCGTGCCCAACTGTTTGTCTGTCTTCTACCAGGATTCTTCAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCAGGCCGTGCCCAACTGTTTGTCTGTCTTCTACCAGGATTCTTCAC  747

seq1  TGCAGAAGACAGTGGTTAGCTTGGGCATCTGGTTAATCAAATCATGCGTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAGACAGTGGTTAGCTTGGGCATCTGGTTAATCAAATCATGCGTC  797

seq1  CCCTGTAAGCATTACAAGAGGCATGATTGAGGCATTTGTAAAAATTTGGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTAAGCATTACAAGAGGCATGATTGAGGCATTTGTAAAAATTTGGC  847

seq1  TCATAGTAAGTCTCATCATAATTTAAAAAAAAAAAAAAGAATTACTTTCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTAAGTCTCATCATAATTTAAAAAAAAAAAAAAGAATTACTTTCT  897

seq1  TTGCTGACATTAAAACCCAAAGCCAGCTGAGAGGCTGTGGTTCCTACCAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGACATTAAAACCCAAAGCCAGCTGAGAGGCTGTGGTTCCTACCAC  947

seq1  TACACCTGGTCCACATTGTGCTGGTTGAATCCGCCTTTGCTTCACTGTAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCTGGTCCACATTGTGCTGGTTGAATCCGCCTTTGCTTCACTGTAA  997

seq1  ATGATTTTGAGGGTGGAATTC  1019
      |||||||||||||||||||||
seq2  ATGATTTTGAGGGTGGAATTC  1018

seq1: chr13_55740644_55741802
seq2: B6Ng01-023J21.g_68_1217

seq1  GAATTCTTCATATTGTCTAGTTGAGGAACTTGGGATCCAGGGAGTTGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATATTGTCTAGTTGAGGAACTTGGGATCCAGGGAGTTGGGG  50

seq1  GTCTGCCCTCTGTCACGTGGTAACTAGCAGCTCTAGGGGAGAAGTGTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCCCTCTGTCACGTGGTAACTAGCAGCTCTAGGGGAGAAGTGTCAC  100

seq1  CTCTTAGTCTTAAGATTCTGATCTTTGAGCCAGGTCTGTCTGTGTCCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAGTCTTAAGATTCTGATCTTTGAGCCAGGTCTGTCTGTGTCCTTA  150

seq1  TGAAGGCCCAGGCCTCCCCTCGGCAACACTTCCCCCTTGCTGAGATTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCCCAGGCCTCCCCTCGGCAACACTTCCCCCTTGCTGAGATTAGG  200

seq1  AGTTTGATTAGCTCAGCCAGTGACCAGGGCTGAGCTGCAGCTCTAGCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGATTAGCTCAGCCAGTGACCAGGGCTGAGCTGCAGCTCTAGCTGG  250

seq1  AGACTGCCTGAAATTTAAAGTATCTGTTACAGCCTGCTGTGTTAGCTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGCCTGAAATTTAAAGTATCTGTTACAGCCTGCTGTGTTAGCTAAG  300

seq1  GTCACTATGGGAACTAGTGTCCTCCCATTTCCCTCGATTCTCGTGGGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTATGGGAACTAGTGTCCTCCCATTTCCCTCGATTCTCGTGGGAAC  350

seq1  TGGCGTCCCTTGTTTCCTGTTTGGCTGATTTGGTAGCTAAGTGAGGCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGTCCCTTGTTTCCTGTTTGGCTGATTTGGTAGCTAAGTGAGGCTCT  400

seq1  GTAAGGCCTCAGCAGTGATCATAATTGTAAGGCCTTTTCGGGTTGGGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGCCTCAGCAGTGATCATAATTGTAAGGCCTTTTCGGGTTGGGACA  450

seq1  GTCACGGTCTGCAGTAATTCTCTTTGGCCACAAAATAAAAGAAAACTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACGGTCTGCAGTAATTCTCTTTGGCCACAAAATAAAAGAAAACTCTT  500

seq1  CCCGTCAGGCGCTCCAGAAGTAGAGAGCGAGACAGAAGCCGAGAGCGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTCAGGCGCTCCAGAAGTAGAGAGCGAGACAGAAGCCGAGAGCGGAG  550

seq1  AAGATCTCGGAGCAGAGATAGAAGGCGCTCAAGGAGTCGAAGCCGGGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTCGGAGCAGAGATAGAAGGCGCTCAAGGAGTCGAAGCCGGGGCA  600

seq1  GGCGGTCCCGGTCCTCCAGTCCTGGCAGCAAAACCAAGAAGACTGAGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGTCCCGGTCCTCCAGTCCTGGCAGCAAAACCAAGAAGACTGAGAAC  650

seq1  AGGTAACGCCGTCCTCAGACTGCGCCTGCTGCTACAGGCTTTGACGCTCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAACGCCGTCCTCAGACTGCGCCTGCTGCTACAGGCTTTGACGCTCG  700

seq1  CTGGGAAGTGTTGGCAGAGTGTTTATTAGGCTGTGGGGCTTATGTTTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAGTGTTGGCAGAGTGTTTATTAGGCTGTGGGGCTTATGTTTCAG  750

seq1  TTGAGAATAGCAGATTCTATTGTTTTTACACTCCACACTGAAC-CCTTAT  799
      ||||||||||||||||||||||||||||||||||||||||||| | ||||
seq2  TTGAGAATAGCAGATTCTATTGTTTTTACACTCCACACTGAACTCTTTAT  800

seq1  TTCTTATTTATTAACGGTCAGAACTTCTGTTATCATCTTTTGTGGGGCAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATTTATTAACGGTCAGAACTTCTGTTATCATCTTTTGTGGGGCAG  850

seq1  TGACTATTGTCTCAGGCATGCTGGTCACCATTTGAGGTAAGCCCTCTGTA  899
      |||||||||||||| |||||||||||||||||||| ||||||||||||||
seq2  TGACTATTGTCTCA-GCATGCTGGTCACCATTTGA-GTAAGCCCTCTGTA  898

seq1  TTCAGCTCCATCCTTGGCCTCAGTTTTGTTTTTTTTTTCTTTG-AGATTC  948
      ||||||| ||||||||||||||||||  ||||||||||||||| ||||||
seq2  TTCAGCT-CATCCTTGGCCTCAGTTTGTTTTTTTTTTTCTTTGAAGATTC  947

seq1  TTTTTTCTGATAGTTAGATATTGGTTGACAACTTTTTAAAGATTTCTTTT  998
      ||||||||||||| ||||||||||||||||   |||| ||||||||||||
seq2  TTTTTTCTGATAG-TAGATATTGGTTGACA--CTTTTCAAGATTTCTTTT  994

seq1  TATTGATTTA-TGCATGCCTGTGTA-GGTGTGTACAGGCGCATAGGTGCC  1046
      |||||||||| |||||||||||||| ||||||||||||||| ||||||||
seq2  TATTGATTTATTGCATGCCTGTGTAGGGTGTGTACAGGCGC-TAGGTGCC  1043

seq1  AGTGGAAGCAGGAGGCCTCAGATCCCCAGGAGCTGGAGGTACAAGAATCT  1096
      ||| |||||| || |||||  || | |||   || |||||||| || |  
seq2  AGT-GAAGCAAGA-GCCTCGAATTCTCAG--ACT-GAGGTACAGGATTTA  1088

seq1  TATTCAC-TTAGACACTGGCAGATTCTATTGGGTTTTGTTTTTGGTTTTT  1145
      | ||||| |||||  |||||| |||||||| ||||| |||||||||||||
seq2  TTTTCACTTTAGAACCTGGCA-ATTCTATT-GGTTTGGTTTTTGGTTTTT  1136

seq1  TGGTTTTTTTTTTT  1159
         |||||||||||
seq2  GACTTTTTTTTTTT  1150