BAC Information

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BAC

Clone NameB6Ng01-024B05
Chromosome13 (Build37)
Map Location 49,522,348 - 49,523,495
singlet/doubletsinglet
Overlap geneIppk
Upstream geneZfp169, A830005F24Rik, AW456874, Barx1, Phf2, EG667415, BC010304, C030044B11Rik, Wnk2, Ninj1, 1110007C09Rik, Susd3, Fgd3, Bicd2
Downstream geneCenpp, Tes3-ps, Ecm2, Aspn, Omd, Ogn, Nol8, Iars, LOC667488, LOC670357, EG638833, Gm272, EG667503, EG667507, LOC100040099, LOC625110, LOC676907, LOC667546, LOC667552, LOC100040085, LOC100040159, LOC100040176, LOC100040118, Gm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632, EG667637, Fbxw17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024B05.bB6Ng01-024B05.g
ACCDH855816DH855817
length1,128123
definitionDH855816|Mus musculus domesticus DNA, BAC clone: B6Ng01-024B05, 5' end.DH855817|Mus musculus domesticus DNA, BAC clone: B6Ng01-024B05, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagatttccaaagttcctgtcactgtgttcttgataaacataggg
cagctggcgtatttacaaatggaaactgtacatttcctttgcattattaa
tacactaagacacacacacacactaccattagcatcaatacaagttaatt
caaaagcaagtctctagcctactaagggggaaaaagttaacagctaggca
aggtggtcacacctacaatcccagtagttggaggctgagacacaagatgg
caagtttcaggccagcctggtccacaaagtaagttctactccagcctaga
ctacaaagaaatctgtctttgaaacaaaagcaaacaaaagccaggtgtgg
tgtatgcctttaattccataacacccaagagagaggctgatctctgtggg
tctgcagttaggttggtatacatagagagctctaggccagtcagagctac
atgagaccctgagggagccggggagtagggggaatcctgggaaccaaaac
ctgttggctccttcttgatacataaaacagtgtcactatccccagcactt
cttaacatcaacatcatcactactgcagagaacactcccagactacagtc
cctcccccacctctccatttgaggtggaccacatgaatcccaaggtataa
aatgtgaaaagttaggcctgaagggaagcccaaacattgttttggttctc
aaggtcaaggtcatgtgcaagggaacagagcttggaggcaggcctgaatc
ccagggatctccacatcacatttccagttgtcctgctccatttagctgct
gagttgttaactaaggggttgggggtgctgactagtcccaggcaaacagt
gtagatacaaaccttgtggggcctaagcagcaaagcccacagtaacccac
tggttcgccactgctggaccatcctcccacaagatgtctcagccacacat
ctatgcacagagctcggctctatcacccacagaagtctcctctcccttcc
catcagtagctaaaccatgaccactaggaaaactcacgcatgatggatcc
aattcagagaactatttctcctctacaaatcatcatccacaaatcgtctc
actgcaaccactctccccctggagaact
caactcaactacatataagtgtgaagctagcctaggcaacatgatgctgt
tttgtctcttcaaaacaagaaagagcagaggaagggaggcagggagagat
ggaaggaggggagagggaaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_49522348_49523495
seq2: B6Ng01-024B05.b_45_1172 (reverse)

seq1  AGTTCTCCTGGGGGAGGAGTGGTTGGGAGCTGATGACGATTTGTGGATGA  50
      |||||||| |||||| |||||||| | || ||| ||||||||||||||||
seq2  AGTTCTCCAGGGGGA-GAGTGGTT-GCAG-TGA-GACGATTTGTGGATGA  46

seq1  TGAATGTGTAGATGGAGAAAATAGTTTCTCTTGAATTGGATCCATCACTG  100
      || || |||||| |||| |||||| ||||| |||||||||||||||| ||
seq2  TG-ATTTGTAGA-GGAG-AAATAG-TTCTC-TGAATTGGATCCATCA-TG  90

seq1  CGTTGAGGTTTTTCCTAGTTGGTCATGGTTTGAGCTACCTGATGGGAAGG  150
      || ||||  ||||||||| |||||||||||| ||||| ||||||||||||
seq2  CG-TGAG--TTTTCCTAG-TGGTCATGGTTT-AGCTA-CTGATGGGAAGG  134

seq1  GAGAGGAGACTTCTGTGGGTGATAGAGGCCGAGCTACTGTGCATAGATGT  200
      |||||||||||||||||||||||||| |||||||| ||||||||||||||
seq2  GAGAGGAGACTTCTGTGGGTGATAGA-GCCGAGCT-CTGTGCATAGATGT  182

seq1  GATGGCTGAGGACATCTTGTGGGAGGATGGTCCAGCAGTGGCGAACCAGT  250
      | ||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  G-TGGCTGA-GACATCTTGTGGGAGGATGGTCCAGCAGTGGCGAACCAGT  230

seq1  GGGTTACTGTGGGCTTTGCTGCTTAGGCCCCACAAGGTTTGTATCTACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTACTGTGGGCTTTGCTGCTTAGGCCCCACAAGGTTTGTATCTACAC  280

seq1  TGTTTGCCTGGGACTAGTCAGCACCCCCAACCCCTTAGTTAACAACTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCCTGGGACTAGTCAGCACCCCCAACCCCTTAGTTAACAACTCAG  330

seq1  CAGCTAAATGGAGCAGGACAACTGGAAATGTGATGTGGAGATCCCTGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAAATGGAGCAGGACAACTGGAAATGTGATGTGGAGATCCCTGGGA  380

seq1  TTCAGGCCTGCCTCCAAGCTCTGTTCCCTTGCACATGACCTTGACCTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCCTGCCTCCAAGCTCTGTTCCCTTGCACATGACCTTGACCTTGA  430

seq1  GAACCAAAACAATGTTTGGGCTTCCCTTCAGGCCTAACTTTTCACATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAAAACAATGTTTGGGCTTCCCTTCAGGCCTAACTTTTCACATTTT  480

seq1  ATACCTTGGGATTCATGTGGTCCACCTCAAATGGAGAGGTGGGGGAGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTTGGGATTCATGTGGTCCACCTCAAATGGAGAGGTGGGGGAGGGA  530

seq1  CTGTAGTCTGGGAGTGTTCTCTGCAGTAGTGATGATGTTGATGTTAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGTCTGGGAGTGTTCTCTGCAGTAGTGATGATGTTGATGTTAAGAA  580

seq1  GTGCTGGGGATAGTGACACTGTTTTATGTATCAAGAAGGAGCCAACAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGGATAGTGACACTGTTTTATGTATCAAGAAGGAGCCAACAGGT  630

seq1  TTTGGTTCCCAGGATTCCCCCTACTCCCCGGCTCCCTCAGGGTCTCATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTCCCAGGATTCCCCCTACTCCCCGGCTCCCTCAGGGTCTCATGT  680

seq1  AGCTCTGACTGGCCTAGAGCTCTCTATGTATACCAACCTAACTGCAGACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGACTGGCCTAGAGCTCTCTATGTATACCAACCTAACTGCAGACC  730

seq1  CACAGAGATCAGCCTCTCTCTTGGGTGTTATGGAATTAAAGGCATACACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGATCAGCCTCTCTCTTGGGTGTTATGGAATTAAAGGCATACACC  780

seq1  ACACCTGGCTTTTGTTTGCTTTTGTTTCAAAGACAGATTTCTTTGTAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGGCTTTTGTTTGCTTTTGTTTCAAAGACAGATTTCTTTGTAGTC  830

seq1  TAGGCTGGAGTAGAACTTACTTTGTGGACCAGGCTGGCCTGAAACTTGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTGGAGTAGAACTTACTTTGTGGACCAGGCTGGCCTGAAACTTGCC  880

seq1  ATCTTGTGTCTCAGCCTCCAACTACTGGGATTGTAGGTGTGACCACCTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTGTCTCAGCCTCCAACTACTGGGATTGTAGGTGTGACCACCTTG  930

seq1  CCTAGCTGTTAACTTTTTCCCCCTTAGTAGGCTAGAGACTTGCTTTTGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCTGTTAACTTTTTCCCCCTTAGTAGGCTAGAGACTTGCTTTTGAA  980

seq1  TTAACTTGTATTGATGCTAATGGTAGTGTGTGTGTGTGTCTTAGTGTATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTGTATTGATGCTAATGGTAGTGTGTGTGTGTGTCTTAGTGTATT  1030

seq1  AATAATGCAAAGGAAATGTACAGTTTCCATTTGTAAATACGCCAGCTGCC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGCAAAGGAAATGTACAGTTTCCATTTGTAAATACGCCAGCTGCC  1080

seq1  CTATGTTTATCAAGAACACAGTGACAGGAACTTTGGAAATCTGAATTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTTTATCAAGAACACAGTGACAGGAACTTTGGAAATCTGAATTC  1128