BAC Information

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BAC

Clone NameB6Ng01-024J23
Chromosome13 (Build37)
Map Location 8,598,932 - 8,741,598
singlet/doubletdoublet
Overlap geneAdarb2
Upstream geneLOC791083, LOC382722, EG666941
Downstream geneWdr37, LOC100039632, Idi1, EG382723, LOC100039655, Idi2, Gtpbp4, LOC667721, Larp5, EG667727, LOC100039719, Dip2c, LOC666986, Zmynd11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024J23.bB6Ng01-024J23.g
ACCDH856201DH856202
length1,1851,076
definitionDH856201|Mus musculus domesticus DNA, BAC clone: B6Ng01-024J23, 5' end.DH856202|Mus musculus domesticus DNA, BAC clone: B6Ng01-024J23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,598,932 - 8,600,118)(8,740,515 - 8,741,598)
sequence
gaattcaaccaatcatacgacactacactactacatagtaactgttagca
gggctttcctttattgtaacaaaatatctgagtcaatttatttgtttcca
gtccatgaaatactgcttccaaagatagctttggatctctgatgaaatag
tgtgtcaaggcagcatgtagaagaaccaaactgctcacctcatgaacatg
aaaagaaaagagaagggaagggttcatgtctcacaatcccattcaaaagt
acataaccgggctggtgagatggctcagtgggtaagagcacccgactgct
cttccgaaggtccggagttcaaatcccagcaaccacatggtggctcacaa
ccatctgtaacgagatctgactccctcttctggagtgtctgaagacagct
acagtgtacttacatataataaataaataaatcttaaaaaaaaaagtaca
taaccaatgacttaaggatttctcatgaggctgttcttcctaaatgcccc
acaacctagcaatcctactaccctgagtaataggcctttaatatgtggac
attggggtacacttaaacaaatcataccgataacaatcctcgtcagtgtg
atgttgcttggatacagatgtcattgcaaagtcaatttcttcttcctgag
gtattgtcctctgcttctgcggtccagctgcctcctctgtatatcagtgt
ttaagtattttcttctgcgccatgactccctgccatccctttgtgatccc
atctcaaggctagtcaactctccttcttctgcgcttatgtaatactggca
atagctgtagctatcaggtgtgttactgatcatttcactccccacagtgt
caccattgccatcctcctgtttatctctttcccactagaagaagactata
gctaatttctcttcatttccatgtctgtcaaagtcctgagcatataaaaa
ggtccaaccaaatgctctttggagtgcttagcatggtgctccacttgctt
gtttctatgttcattattctcctcctctttctaccttatcccttctagga
tagtaaagggcaacatgtgtaatgcatagtaaaggttattcttcagtcat
aaagaaaatagtgaaagatgatttagacatgtttcttactcaaggacagg
gttcttttctacaactaagttatcgttttggcaat
ctatgtatagagtttctaagcacagcaagtgaacctggaaggcagtctct
gcctgggtcctctgctcccgaggaacctggaaggctgtctatgcttaggc
cctatctttgtatagataatgccagcagggagtcaaaaaccatggcctgg
agccctcttgaggcattggaaggaattcaaaccaacttctgaggctgcca
gggagaaggtctgggggaagagaagcactgggtgtgagaggaacccatgg
cttgtatacctacaatactttttaaaaaaattacatatacttacagaaaa
tatttatggaagtttgtcaattactacatcatatacttaaatttgttgta
atataaaatgatactacaaattaatatctagatgaaagaaagtatttgct
tctaccatgcaagttattttgcaaattataatttatcatcattatacttc
tcttgaattcgagaagactagcatttcacataagattcttaaatactatg
tatatccatgccaaagtaggaacatggatgcctttaggtatccacagtat
gaaaagcagatagaatagggttgtcattggtgaaaattttcatgcacacc
aagcttttgactacgttgtcagaaaatacaatgtctaaaacagcttctgg
atatgattgctattaattttgttactgctcaggacaatcagtaccaggag
gaaagagagcaagtgccctctacttctatttcattagaaatgtcctagtg
ttcgtcacatcaagctaaaataggggtttcagctcacagttctagcaatc
aattctctgacctgtctcgagctccagatttcctgataattgctataacc
ttgctgtgtattagaaaagaatttattttcagtgtgggcttagaaaagtc
aagattaaaaaccatgtcttggctggtgagatggctcagttgataaagat
acctgctgccaaactgatgacagagttcaatctagaagacctgttaagta
gatggggagacagtacccaatctcaaaagaactcactgatatgtactcac
tgatacgtggattctagcccgaaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_8598932_8600118
seq2: B6Ng01-024J23.b_46_1230

seq1  GAATTCAACCAATCATACGACACTACACTACTACATAGTAACTGTTAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCAATCATACGACACTACACTACTACATAGTAACTGTTAGCA  50

seq1  GGGCTTTCCTTTATTGTAACAAAATATCTGAGTCAATTTATTTGTTTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTTCCTTTATTGTAACAAAATATCTGAGTCAATTTATTTGTTTCCA  100

seq1  GTCCATGAAATACTGCTTCCAAAGATAGCTTTGGATCTCTGATGAAATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGAAATACTGCTTCCAAAGATAGCTTTGGATCTCTGATGAAATAG  150

seq1  TGTGTCAAGGCAGCATGTAGAAGAACCAAACTGCTCACCTCATGAACATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCAAGGCAGCATGTAGAAGAACCAAACTGCTCACCTCATGAACATG  200

seq1  AAAAGAAAAGAGAAGGGAAGGGTTCATGTCTCACAATCCCATTCAAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAGAGAAGGGAAGGGTTCATGTCTCACAATCCCATTCAAAAGT  250

seq1  ACATAACCGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAACCGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT  300

seq1  CTTCCGAAGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCGAAGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAA  350

seq1  CCATCTGTAACGAGATCTGACTCCCTCTTCTGGAGTGTCTGAAGACAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGTAACGAGATCTGACTCCCTCTTCTGGAGTGTCTGAAGACAGCT  400

seq1  ACAGTGTACTTACATATAATAAATAAATAAATCTTAAAAAAAAAAGTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTACTTACATATAATAAATAAATAAATCTTAAAAAAAAAAGTACA  450

seq1  TAACCAATGACTTAAGGATTTCTCATGAGGCTGTTCTTCCTAAATGCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAATGACTTAAGGATTTCTCATGAGGCTGTTCTTCCTAAATGCCCC  500

seq1  ACAACCTAGCAATCCTACTACCCTGAGTAATAGGCCTTTAATATGTGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCTAGCAATCCTACTACCCTGAGTAATAGGCCTTTAATATGTGGAC  550

seq1  ATTGGGGTACACTTAAACAAATCATACCGATAACAATCCTCGTCAGTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGGTACACTTAAACAAATCATACCGATAACAATCCTCGTCAGTGTG  600

seq1  ATGTTGCTTGGATACAGATGTCATTGCAAAGTCAATTTCTTCTTCCTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGCTTGGATACAGATGTCATTGCAAAGTCAATTTCTTCTTCCTGAG  650

seq1  GTATTGTCCTCTGCTTCTGCGGTCCAGCTGCCTCCTCTGTATATCAGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGTCCTCTGCTTCTGCGGTCCAGCTGCCTCCTCTGTATATCAGTGT  700

seq1  TTAAGTATTTTCTTCTGCGCCATGACTCCCTGCCATCCCTTTGTGATCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTATTTTCTTCTGCGCCATGACTCCCTGCCATCCCTTTGTGATCCC  750

seq1  ATCTCAAGGCTAGTCAACTCTCCTTCTTCTGCGCTTATGTAATACTGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAAGGCTAGTCAACTCTCCTTCTTCTGCGCTTATGTAATACTGGCA  800

seq1  ATAGCTGTAGCTATCAGGTGTGTTACTGATCATTTCACTCCCCACAGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGTAGCTATCAGGTGTGTTACTGATCATTTCACTCCCCACAGTGT  850

seq1  CACCATTGCCATCCTCCTGTTTATCTC-TTCCCACTAGAAGAAGAACTAT  899
      ||||||||||||||||||||||||||| |||||||||||||||| |||||
seq2  CACCATTGCCATCCTCCTGTTTATCTCTTTCCCACTAGAAGAAG-ACTAT  899

seq1  AGCTAATTTCTCTCCATTTCCATGTCTGTCAAAGTCCTGAGCATATAAAA  949
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGCTAATTTCTCTTCATTTCCATGTCTGTCAAAGTCCTGAGCATATAAAA  949

seq1  AGGTCCAACC-AATGCTCTTTGGAGGTGCTTAGCATGGTTGCT-CACTTG  997
      |||||||||| ||||||||||||| ||||||||||||| |||| ||||||
seq2  AGGTCCAACCAAATGCTCTTTGGA-GTGCTTAGCATGG-TGCTCCACTTG  997

seq1  CTTGTTTCTATGTTCATTATTCTCCTCCTC-TTCTACCTTATTCCTTTCT  1046
      |||||||||||||||||||||||||||||| |||||||||| ||| ||||
seq2  CTTGTTTCTATGTTCATTATTCTCCTCCTCTTTCTACCTTA-TCCCTTCT  1046

seq1  AAGGATAGTTAAGGGC-ACATGTGTAATGCATAGT-AAGGTTATTTCCTC  1094
       |||||||| |||||| |||||||||||||||||| |||||||||  || 
seq2  -AGGATAGTAAAGGGCAACATGTGTAATGCATAGTAAAGGTTATT--CTT  1093

seq1  CAGTCCATAAGAAAATAGTTGAAAGTAGTTTGAG-CATG-TTCTTACTCA  1142
      |||||   |||||||||| ||||||  | || || |||| ||||||||||
seq2  CAGTCATAAAGAAAATAG-TGAAAGATGATTTAGACATGTTTCTTACTCA  1142

seq1  GGGACAGTG-TCTTTTCTACAACTTAAGTTATATCGTTTTGCCAAT  1187
       |||||| | ||||||||||||| |||||  |||||||||| ||||
seq2  AGGACAGGGTTCTTTTCTACAAC-TAAGT--TATCGTTTTGGCAAT  1185

seq1: chr13_8740515_8741598
seq2: B6Ng01-024J23.g_74_1149 (reverse)

seq1  AGTTTCTGGGCTAATATCCACGTATCAGTGAGTACATATCAAGTGAGTTC  50
      |||||| ||||||  ||||||||||||||||||||||||| |||||||||
seq2  AGTTTC-GGGCTAGAATCCACGTATCAGTGAGTACATATC-AGTGAGTTC  48

seq1  TTTTGAGATTGGGTTACTGTTCTCCCCTTCTACTGTACAGGTCTCTGAGA  100
      ||||||||||||| ||||| ||||||| ||||||  ||||||||   |||
seq2  TTTTGAGATTGGG-TACTG-TCTCCCCATCTACTTAACAGGTCTTCTAGA  96

seq1  TTGAACTCTGGTCATCAGGTTTGGCAGCAGGTATCTTTATCCACTGAGCC  150
      ||||||||| ||||||| ||||||||||||||||||||||| ||||||||
seq2  TTGAACTCT-GTCATCA-GTTTGGCAGCAGGTATCTTTATCAACTGAGCC  144

seq1  ATCTCACCAGCCCAAGACATGGTTTTTAATCTTGACTTTTCTAAGCCCAC  200
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACCAG-CCAAGACATGGTTTTTAATCTTGACTTTTCTAAGCCCAC  193

seq1  ACTGAAAATAAATTCTTTTTCTAATACACAGCAAGGTTATAGCAATTATC  250
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACTGAAAATAAATTC-TTTTCTAATACACAGCAAGGTTATAGCAATTATC  242

seq1  AGGAAATCTGGAGCTCGAGACAGGTCAGAGAATTGATTGCTAGAACTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATCTGGAGCTCGAGACAGGTCAGAGAATTGATTGCTAGAACTGTG  292

seq1  AGCTGAAACCCCTATTTTAGCTTGATGTGACGAACACTAGGACATTTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAACCCCTATTTTAGCTTGATGTGACGAACACTAGGACATTTCTA  342

seq1  ATGAAATAGAAGTAGAGGGCACTTGCTCTCTTTCCTCCTGGTACTGATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATAGAAGTAGAGGGCACTTGCTCTCTTTCCTCCTGGTACTGATTG  392

seq1  TCCTGAGCAGTAACAAAATTAATAGCAATCATATCCAGAAGCTGTTTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGCAGTAACAAAATTAATAGCAATCATATCCAGAAGCTGTTTTAG  442

seq1  ACATTGTATTTTCTGACAACGTAGTCAAAAGCTTGGTGTGCATGAAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTATTTTCTGACAACGTAGTCAAAAGCTTGGTGTGCATGAAAATT  492

seq1  TTCACCAATGACAACCCTATTCTATCTGCTTTTCATACTGTGGATACCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCAATGACAACCCTATTCTATCTGCTTTTCATACTGTGGATACCTA  542

seq1  AAGGCATCCATGTTCCTACTTTGGCATGGATATACATAGTATTTAAGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATCCATGTTCCTACTTTGGCATGGATATACATAGTATTTAAGAAT  592

seq1  CTTATGTGAAATGCTAGTCTTCTCGAATTCAAGAGAAGTATAATGATGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGTGAAATGCTAGTCTTCTCGAATTCAAGAGAAGTATAATGATGAT  642

seq1  AAATTATAATTTGCAAAATAACTTGCATGGTAGAAGCAAATACTTTCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATAATTTGCAAAATAACTTGCATGGTAGAAGCAAATACTTTCTTT  692

seq1  CATCTAGATATTAATTTGTAGTATCATTTTATATTACAACAAATTTAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAGATATTAATTTGTAGTATCATTTTATATTACAACAAATTTAAGT  742

seq1  ATATGATGTAGTAATTGACAAACTTCCATAAATATTTTCTGTAAGTATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATGTAGTAATTGACAAACTTCCATAAATATTTTCTGTAAGTATAT  792

seq1  GTAATTTTTTTAAAAAGTATTGTAGGTATACAAGCCATGGGTTCCTCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTTTTTAAAAAGTATTGTAGGTATACAAGCCATGGGTTCCTCTCA  842

seq1  CACCCAGTGCTTCTCTTCCCCCAGACCTTCTCCCTGGCAGCCTCAGAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGTGCTTCTCTTCCCCCAGACCTTCTCCCTGGCAGCCTCAGAAGT  892

seq1  TGGTTTGAATTCCTTCCAATGCCTCAAGAGGGCTCCAGGCCATGGTTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGAATTCCTTCCAATGCCTCAAGAGGGCTCCAGGCCATGGTTTTT  942

seq1  GACTCCCTGCTGGCATTATCTATACAAAGATAGGGCCTAAGCATAGACAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCCTGCTGGCATTATCTATACAAAGATAGGGCCTAAGCATAGACAG  992

seq1  CCTTCCAGGTTCCTCGGGAGCAGAGGACCCAGGCAGAGACTGCCTTCCAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAGGTTCCTCGGGAGCAGAGGACCCAGGCAGAGACTGCCTTCCAG  1042

seq1  GTTCACTTGCTGTGCTTAGAAACTCTATACATAG  1084
      ||||||||||||||||||||||||||||||||||
seq2  GTTCACTTGCTGTGCTTAGAAACTCTATACATAG  1076