BAC Information

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BAC

Clone NameB6Ng01-024L18
Chromosome13 (Build37)
Map Location 45,846,894 - 45,984,709
singlet/doubletdoublet
Overlap geneAtxn1
Upstream geneJarid2, Dtnbp1, Hsp25-ps1, LOC100039502, LOC667204, LOC100039533, Mylip, Gmpr
Downstream gene5033430I15Rik, ENSMUSG00000062282, Gm1574, Rbm24, Cap2, C78339, Nup153, Kif13a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024L18.bB6Ng01-024L18.g
ACCDH856279DH856280
length438174
definitionDH856279|Mus musculus domesticus DNA, BAC clone: B6Ng01-024L18, 5' end.DH856280|Mus musculus domesticus DNA, BAC clone: B6Ng01-024L18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,846,894 - 45,847,308)(45,984,536 - 45,984,709)
sequence
cgggggaaaggcattacatattttgtaaactcactcagcagccctgaggt
ctaactcagagaactctaggctgaagcctggctgagattcaaatcttctc
cttaatgagttaggggctctcttccaagtcttctccaggcacccctcatg
cctctttcacttttggccctccctctggtctttggaattgggccgtggtc
ctcagtattggttcagaaaattcatgttatagaggatggaaatcctgagt
ttcgatcttaactttgtcacttcccccaaccccttttgaggtctccctgt
cttgactgctaaacaaggacatggaattcctgggacaagacacaattcct
tgtgacttagttataatagttgaccatcatcttctagcagattttcaaaa
gtactttcatggacttcacaaaaaaattctcaggagcc
agtgatgcacaaaccgcaggagctcccttgaactgtgtcaggggctggcg
ccagacctgggcctgggatagaaagaaacctgagggtgttaaaagtgccc
ttctgagggtacgacttctctgtagcttgcattctgtttgacggggctct
ctgctgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_45846894_45847308
seq2: B6Ng01-024L18.b_23_438

seq1  TTGTAAACTCACTCAGCAGCCC-GAGGTCTAACTCAGAGAACTCTAGGCT  49
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTGTAAACTCACTCAGCAGCCCTGAGGTCTAACTCAGAGAACTCTAGGCT  50

seq1  GAAGCCTGGCTGAGATTCAAATCTTCTCCTTAATGAGTTAGGGGCTCTCT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTGGCTGAGATTCAAATCTTCTCCTTAATGAGTTAGGGGCTCTCT  100

seq1  TCCAAGTCTTCTCCAGGCACCCCTCATGCCTCTTTCACTTTTGGCCCTCC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTCTTCTCCAGGCACCCCTCATGCCTCTTTCACTTTTGGCCCTCC  150

seq1  CTCTGGTCTTTGGAATTGGGCCGTGGTCCTCAGTATTGGTTCAGAAAATA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTCTGGTCTTTGGAATTGGGCCGTGGTCCTCAGTATTGGTTCAGAAAATT  200

seq1  CATGTTATAGAGGATGGAAATCCTGAGTTTCGATCTTAACTTTGTCACTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTATAGAGGATGGAAATCCTGAGTTTCGATCTTAACTTTGTCACTT  250

seq1  CCCCCAACCCCTTTTGAGGTCTCCCTGTCTTGACTGCTAAACAAGGACAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAACCCCTTTTGAGGTCTCCCTGTCTTGACTGCTAAACAAGGACAT  300

seq1  GGAATTCCTGGGACAAGACACAATTCCTTGTGACTTAGTTATAATAGTTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCCTGGGACAAGACACAATTCCTTGTGACTTAGTTATAATAGTTG  350

seq1  ACCATCATCTTCTAGCAGATTTTCAAAAGTACTTTCATGGACTTCACAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCATCTTCTAGCAGATTTTCAAAAGTACTTTCATGGACTTCACAAA  400

seq1  AAAATTCTCAGGAGCC  415
      ||||||||||||||||
seq2  AAAATTCTCAGGAGCC  416

seq1: chr13_45984536_45984709
seq2: B6Ng01-024L18.g_74_247 (reverse)

seq1  CACACACACACACACACACAGCAGAGAGCCCCGTCAAACAGAATGCAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACAGCAGAGAGCCCCGTCAAACAGAATGCAAGC  50

seq1  TACAGAGAAGTCGTACCCTCAGAAGGGCACTTTTAACACCCTCAGGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGAAGTCGTACCCTCAGAAGGGCACTTTTAACACCCTCAGGTTTC  100

seq1  TTTCTATCCCAGGCCCAGGTCTGGCGCCAGCCCCTGACACAGTTCAAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATCCCAGGCCCAGGTCTGGCGCCAGCCCCTGACACAGTTCAAGGG  150

seq1  AGCTCCTGCGGTTTGTGCATCACT  174
      ||||||||||||||||||||||||
seq2  AGCTCCTGCGGTTTGTGCATCACT  174