BAC Information

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BAC

Clone NameB6Ng01-026B18
Chromosome13 (Build37)
Map Location 26,643,017 - 26,644,040
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC214973, LOC666221, LOC100042180
Downstream geneLOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026B18.bB6Ng01-026B18.g
ACCDH857248DH857249
length1,1521,040
definitionDH857248|Mus musculus domesticus DNA, BAC clone: B6Ng01-026B18, 5' end.DH857249|Mus musculus domesticus DNA, BAC clone: B6Ng01-026B18, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcacccaaacgctgacaccattgcatatactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccaa
tggaggagctagagaaagtacccagagctaagggatcttcaccctatagg
tggaacaacattatgactacagtactcctgagctcttgactcttagctgc
atttgacaaagatgctagtcgcatcactggaaggaaggccatggaaacgc
gaccttggtgtgctcggtacagggaactcaggcaacagtaattgttgtat
ag
gaattcattgcatgaaatttaattattagcacttgagatttgtgtgaagt
taaaaatctttgaagaggcctccttaacttctatacatatgcttaaagaa
tccatctttagcctctaatctctaaagaagtcaataatgtacacaaggct
agatcaaaccaagctgctagcatatccaaatgtctcacagtatggtctca
accccacacttctccagtactgtatttcaattgtaatatgacaatgacaa
attaaagtaaagactgtgtctcaagagtcctgaaagaaccccagccatga
tggttcacacttgtgtgacacttcgtggttagctaagccaggacagtcaa
aagcctgaggtcagcctgaactacagagagagcaaaatgaaacagagtgc
tacaacaccccatgttgccattctgactgagagaggaggaaaaagcctac
tttgtggttctaaaacactttgaaacaaaaaaaatatataactcaaaaga
ggagaataaattacttttattccagtctccaggacaagtgtatttaaata
ggaaacactcttgggaagagactattattcagggatgagtttttttccct
cttattcccacactctccttggaatagccctgaaggttagtgtcatattt
taaagagacagtcaggtgtctggccacccagtaggtcagcatactgccat
cagcactgcattggtgtgctggacaccgaagtggagggggtaaaactgcc
aaggagagatttcatgtgttgatacataggaaacagccaaggatcagtgg
ggactttagagccttctacagagaaggaacactagcctctaagagctttg
ctcacacatgatcccatacatggagaatgtgtgctccactgagaacaaaa
aaaaaaaaaaaaacaaacaaacaaacatttcccatgcatcaaatgttcca
cttgtgcccaaggcaaaaggaaagataggaaaagcatccaacactcactc
ttaaaagcaaccaccaccaacaagaaacaaccagatctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_26643017_26644040
seq2: B6Ng01-026B18.g_66_1098 (reverse)

seq1  TGGTTG------GTTGGT-----TTGCTTTTTAAGGGTGGGTGTTTGGAT  39
      ||||||      ||||||     |||| ||||||| ||| ||| ||||||
seq2  TGGTTGTTTCTTGTTGGTGGTGGTTGC-TTTTAAGAGTGAGTG-TTGGAT  48

seq1  GCTTTTCCTATCTTTCCTTTTGCCTTGGGCACAAGTGG-ACATTTGATGC  88
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCTTTTCCTATCTTTCCTTTTGCCTTGGGCACAAGTGGAACATTTGATGC  98

seq1  ATGGGAAATGTTTGTTTGTTTGTTTTTTTTTTTTTTTTTTGTTCTCAGTG  138
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATGGGAAATGTTTGTTTGTTTG-TTTTTTTTTTTTTTTTTGTTCTCAGTG  147

seq1  GAGCACACATTCTCCATGTATGGGATCATGTGTGAGCAAAGCTCTTAGAG  188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACACATTCTCCATGTATGGGATCATGTGTGAGCAAAGCTCTTAGAG  197

seq1  GCTAGTGTTCCTTCTCTGTAGAAGGCTCTAAAGTCCCCACTGATCCTTGG  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTGTTCCTTCTCTGTAGAAGGCTCTAAAGTCCCCACTGATCCTTGG  247

seq1  CTGTTTCCTATGTATCAACACATGAAATCTCTCCTTGGCAGTTTTACCCC  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCCTATGTATCAACACATGAAATCTCTCCTTGGCAGTTTTACCCC  297

seq1  CTCCACTTCGGTGTCCAGCACACCAATGCAGTGCTGATGGCAGTATGCTG  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTTCGGTGTCCAGCACACCAATGCAGTGCTGATGGCAGTATGCTG  347

seq1  ACCTACTGGGTGGCCAGACACCTGACTGTCTCTTTAAAATATGACACTAA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACTGGGTGGCCAGACACCTGACTGTCTCTTTAAAATATGACACTAA  397

seq1  CCTTCAGGGCTATTCCAAGGAGAGTGTGGGAATAAGAGGGAAAAAAACTC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGGGCTATTCCAAGGAGAGTGTGGGAATAAGAGGGAAAAAAACTC  447

seq1  ATCCCTGAATAATAGTCTCTTCCCAAGAGTGTTTCCTATTTAAATACACT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGAATAATAGTCTCTTCCCAAGAGTGTTTCCTATTTAAATACACT  497

seq1  TGTCCTGGAGACTGGAATAAAAGTAATTTATTCTCCTCTTTTGAGTTATA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGGAGACTGGAATAAAAGTAATTTATTCTCCTCTTTTGAGTTATA  547

seq1  TATTTTTTTTGTTTCAAAGTGTTTTAGAACCACAAAGTAGGCTTTTTCCT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTTTGTTTCAAAGTGTTTTAGAACCACAAAGTAGGCTTTTTCCT  597

seq1  CCTCTCTCAGTCAGAATGGCAACATGGGGTGTTGTAGCACTCTGTTTCAT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTCAGTCAGAATGGCAACATGGGGTGTTGTAGCACTCTGTTTCAT  647

seq1  TTTGCTCTCTCTGTAGTTCAGGCTGACCTCAGGCTTTTGACTGTCCTGGC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCTCTCTGTAGTTCAGGCTGACCTCAGGCTTTTGACTGTCCTGGC  697

seq1  TTAGCTAACCACGAAGTGTCACACAAGTGTGAACCATCATGGCTGGGGTT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTAACCACGAAGTGTCACACAAGTGTGAACCATCATGGCTGGGGTT  747

seq1  CTTTCAGGACTCTTGAGACACAGTCTTTACTTTAATTTGTCATTGTCATA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGGACTCTTGAGACACAGTCTTTACTTTAATTTGTCATTGTCATA  797

seq1  TTACAATTGAAATACAGTACTGGAGAAGTGTGGGGTTGAGACCATACTGT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATTGAAATACAGTACTGGAGAAGTGTGGGGTTGAGACCATACTGT  847

seq1  GAGACATTTGGATATGCTAGCAGCTTGGTTTGATCTAGCCTTGTGTACAT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATTTGGATATGCTAGCAGCTTGGTTTGATCTAGCCTTGTGTACAT  897

seq1  TATTGACTTCTTTAGAGATTAGAGGCTAAAGATGGATTCTTTAAGCATAT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGACTTCTTTAGAGATTAGAGGCTAAAGATGGATTCTTTAAGCATAT  947

seq1  GTATAGAAGTTAAGGAGGCCTCTTCAAAGATTTTTAACTTCACACAAATC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGAAGTTAAGGAGGCCTCTTCAAAGATTTTTAACTTCACACAAATC  997

seq1  TCAAGTGCTAATAATTAAATTTCATGCAATGAATTC  1024
      ||||||||||||||||||||||||||||||||||||
seq2  TCAAGTGCTAATAATTAAATTTCATGCAATGAATTC  1033