BAC Information

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BAC

Clone NameB6Ng01-026N23
Chromosome13 (Build37)
Map Location 25,984,323 - 26,148,347
singlet/doubletdoublet
Overlap genenone
Upstream geneD130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1, Tpi-rs8, LOC214973
Downstream geneLOC666221, LOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026N23.bB6Ng01-026N23.g
ACCDH857778DH857779
length1,140749
definitionDH857778|Mus musculus domesticus DNA, BAC clone: B6Ng01-026N23, 5' end.DH857779|Mus musculus domesticus DNA, BAC clone: B6Ng01-026N23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,147,191 - 26,148,347)(25,984,323 - 25,985,072)
sequence
gaattcctttattctctccaaattgattttactcttcagatttgtttcct
ggacatctacatttcttctaccacacatccacattctcttatgaataatc
accgatgggaattttaatggtggtaggacatatagtaagaccttaatttt
ccaccaaataagtgtaggatacttctatgatcacagtactaccaatgctt
aagtgacatgctctcaagagagaacagtgagaaattgatctctataagaa
attattgtatgtttaaaggcatgtaaactaaagttttaagatacaacctt
agttttcctcctatgtacagctttgctaggtctctgcctcataccttcaa
gcaaaagggaagatatacaacaattggcaaaagaaacttcctagaattgg
ctcagaccgatgtgtttctgcactctgaaatacttaacaccttcggaata
gagggggggaaagttgctttgacaagttgtcagtgagacacatgtggaaa
gctctggtgatggaggaaggctgtcagccccattcgccactgctcgctgt
tcattcaccctatcccattccgacgtgcaccatgtgattatctcattaag
gatcgtgagtctaaaactatgccagggtttctgatccaccccaaacctgt
ttgcacaatgatctatgaaatgagtttctttcaaaaacagatactcacag
atgggtatggaaccacattcgtattcagttaaactggtgaagatgatagt
acattaagagtcgatcaggaataatagctaacaacttaggttcagacaaa
acaagatgcttcctcaagctcaaccaggttcacagtagtctctccttcag
ataagtatcctctaagaatactgtattataatactgtattacaatttact
acaaagaatcagagctgaaatcagtatggtagatatgactaatcaaacta
agacttatttgctaaattgtttatctggagtatggcagcagaacgcagat
tcaatcagagaaaatggggtccaattttatgccaacttttttagaatggt
gacagatggagcatcaaaaagagtagattacaattggtctactagaatga
ggagctcaagttacagtgaggaattgcatgtggagttagc
gaattctttccatgatgttgccgcttgatggtggaggggcaggttgaaaa
tcttgcaaggcactagagtagactgaaaactgactttagtgtctgtcccc
atttctcacaaaacacaaacacacatacagtaagagaattagatcttatc
atgctatataagctaaaagagttaatgatttttatctcagagatcataca
ttttttaagaagttaaaatatctaaccaatcataaccatcaattgttcat
tttgtgataagcctatattacagccaaagcactctgagaaactttgtttc
aggtttgtttacttttttcttcctttttccatatttcaaaactctctcag
ctcttaggtgctctctgtgcctttgtttggcagaaagtcattattgatta
cagaaacccattcaatctgccatgtggaacaaaacctgatcatagccaca
gagggaatgactatatctgttagagagaagagaattactttaaagcttga
ttttaattggtgatttattatttattgattccttcaaataatgacagctt
ttagagaactctgacactactaggttgtataaacattctgccttcagatg
tgtttcctcatcaagcatgaaaggataaagcaggaaggagggaaggagag
atagataaatatggagagagagagagagagagagagagagaaacagagag
aatgaggatgaataaaggattgagagatctatgtgggggtccagaaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_26147191_26148347
seq2: B6Ng01-026N23.b_47_1186 (reverse)

seq1  GCTAACTCCACATGCAAAATTCTTTCCACTGTACATCTGAGCTCCTCATC  50
      |||||||||||||||  ||||| |  ||||||| |  |||||||||||| 
seq2  GCTAACTCCACATGC--AATTCCT--CACTGTA-ACTTGAGCTCCTCATT  45

seq1  TAAGTAGACCCAATGTGTATCTACTCTTTTTGATTGCTCCCATCTGTTCA  100
        |||||||| | |||  ||||||||||||||| |||| ||||||| |||
seq2  CTAGTAGACCAATTGT-AATCTACTCTTTTTGA-TGCT-CCATCTG-TCA  91

seq1  CCACTTTCTAAAAAGTTTGGCATTAAAGATTTGGACCCCA-TCTCTCTGA  149
      |||  |||||||||  ||||||| |||   |||||||||| | |||||||
seq2  CCA--TTCTAAAAAAGTTGGCATAAAA---TTGGACCCCATTTTCTCTGA  136

seq1  TTGAATCTGCCGTTTCTGCCTGCCATACTCCAGATAAACAATTTTAGCAA  199
      ||||||||||   ||||| |||||||||||||||||||||| ||||||||
seq2  TTGAATCTGC--GTTCTG-CTGCCATACTCCAGATAAACAA-TTTAGCAA  182

seq1  ATATGTCTTAGTTTGATTAGTCATATCTACCATACTGATTTCAGCTCTGA  249
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTCTTAGTTTGATTAGTCATATCTACCATACTGATTTCAGCTCTGA  232

seq1  TTCTTTGTAGTAAATTGTAATACAGTATTATAATACAGTATTCTTAGAGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTAGTAAATTGTAATACAGTATTATAATACAGTATTCTTAGAGG  282

seq1  ATACTTATCTGAAGGAGAGACTACTGTGAACCTGGTTGAGCTTGAGGAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTATCTGAAGGAGAGACTACTGTGAACCTGGTTGAGCTTGAGGAAG  332

seq1  CATCTTGTTTTGTCTGAACCTAAGTTGTTAGCTATTATTCCTGATCGACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGTTTTGTCTGAACCTAAGTTGTTAGCTATTATTCCTGATCGACT  382

seq1  CTTAATGTACTATCATCTTCACCAGTTTAACTGAATACGAATGTGGTTCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATGTACTATCATCTTCACCAGTTTAACTGAATACGAATGTGGTTCC  432

seq1  ATACCCATCTGTGAGTATCTGTTTTTGAAAGAAACTCATTTCATAGATCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCATCTGTGAGTATCTGTTTTTGAAAGAAACTCATTTCATAGATCA  482

seq1  TTGTGCAAACAGGTTTGGGGTGGATCAGAAACCCTGGCATAGTTTTAGAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCAAACAGGTTTGGGGTGGATCAGAAACCCTGGCATAGTTTTAGAC  532

seq1  TCACGATCCTTAATGAGATAATCACATGGTGCACGTCGGAATGGGATAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGATCCTTAATGAGATAATCACATGGTGCACGTCGGAATGGGATAGG  582

seq1  GTGAATGAACAGCGAGCAGTGGCGAATGGGGCTGACAGCCTTCCTCCATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATGAACAGCGAGCAGTGGCGAATGGGGCTGACAGCCTTCCTCCATC  632

seq1  ACCAGAGCTTTCCACATGTGTCTCACTGACAACTTGTCAAAGCAACTTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGCTTTCCACATGTGTCTCACTGACAACTTGTCAAAGCAACTTTC  682

seq1  CCCCCCTCTATTCCGAAGGTGTTAAGTATTTCAGAGTGCAGAAACACATC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCTCTATTCCGAAGGTGTTAAGTATTTCAGAGTGCAGAAACACATC  732

seq1  GGTCTGAGCCAATTCTAGGAAGTTTCTTTTGCCAATTGTTGTATATCTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGAGCCAATTCTAGGAAGTTTCTTTTGCCAATTGTTGTATATCTTC  782

seq1  CCTTTTGCTTGAAGGTATGAGGCAGAGACCTAGCAAAGCTGTACATAGGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGCTTGAAGGTATGAGGCAGAGACCTAGCAAAGCTGTACATAGGA  832

seq1  GGAAAACTAAGGTTGTATCTTAAAACTTTAGTTTACATGCCTTTAAACAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACTAAGGTTGTATCTTAAAACTTTAGTTTACATGCCTTTAAACAT  882

seq1  ACAATAATTTCTTATAGAGATCAATTTCTCACTGTTCTCTCTTGAGAGCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAATTTCTTATAGAGATCAATTTCTCACTGTTCTCTCTTGAGAGCA  932

seq1  TGTCACTTAAGCATTGGTAGTACTGTGATCATAGAAGTATCCTACACTTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTTAAGCATTGGTAGTACTGTGATCATAGAAGTATCCTACACTTA  982

seq1  TTTGGTGGAAAATTAAGGTCTTACTATATGTCCTACCACCATTAAAATTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGGAAAATTAAGGTCTTACTATATGTCCTACCACCATTAAAATTC  1032

seq1  CCATCGGTGATTATTCATAAGAGAATGTGGATGTGTGGTAGAAGAAATGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCGGTGATTATTCATAAGAGAATGTGGATGTGTGGTAGAAGAAATGT  1082

seq1  AGATGTCCAGGAAACAAATCTGAAGAGTAAAATCAATTTGGAGAGAATAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTCCAGGAAACAAATCTGAAGAGTAAAATCAATTTGGAGAGAATAA  1132

seq1  AGGAATTC  1157
      ||||||||
seq2  AGGAATTC  1140

seq1: chr13_25984323_25985072
seq2: B6Ng01-026N23.g_67_815

seq1  GAATTCTTTCCATGATGTTGCCGCTTGATGGTGGAGGGGCAGGTTGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCATGATGTTGCCGCTTGATGGTGGAGGGGCAGGTTGAAAA  50

seq1  TCTTGCAAGGCACTAGAGTAGACTGAAAACTGACTTTAGTGTCTGTCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCAAGGCACTAGAGTAGACTGAAAACTGACTTTAGTGTCTGTCCCC  100

seq1  ATTTCTCACAAAACACAAACACACATACAGTAAGAGAATTAGATCTTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCACAAAACACAAACACACATACAGTAAGAGAATTAGATCTTATC  150

seq1  ATGCTATATAAGCTAAAAGAGTTAATGATTTTTATCTCAGAGATCATACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATATAAGCTAAAAGAGTTAATGATTTTTATCTCAGAGATCATACA  200

seq1  TTTTTTAAGAAGTTAAAATATCTAACCAATCATAACCATCAATTGTTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAGAAGTTAAAATATCTAACCAATCATAACCATCAATTGTTCAT  250

seq1  TTTGTGATAAGCCTATATTACAGCCAAAGCACTCTGAGAAACTTTGTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGATAAGCCTATATTACAGCCAAAGCACTCTGAGAAACTTTGTTTC  300

seq1  AGGTTTGTTTACTTTTTTCTTCCTTTTTCCATATTTCAAAACTCTCTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGTTTACTTTTTTCTTCCTTTTTCCATATTTCAAAACTCTCTCAG  350

seq1  CTCTTAGGTGCTCTCTGTGCCTTTGTTTGGCAGAAAGTCATTATTGATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAGGTGCTCTCTGTGCCTTTGTTTGGCAGAAAGTCATTATTGATTA  400

seq1  CAGAAACCCATTCAATCTGCCATGTGGAACAAAACCTGATCATAGCCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACCCATTCAATCTGCCATGTGGAACAAAACCTGATCATAGCCACA  450

seq1  GAGGGAATGACTATATCTGTTAGAGAGAAGAGAATTACTTTAAAGCTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAATGACTATATCTGTTAGAGAGAAGAGAATTACTTTAAAGCTTGA  500

seq1  TTTTAATTGGTGATTTATTATTTATTGATTCCTTCAAATAATGACAGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTGGTGATTTATTATTTATTGATTCCTTCAAATAATGACAGCTT  550

seq1  TTAGAGAACTCTGACACTACTAGGTTGTATAAACATTCTGCCTTCAGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAACTCTGACACTACTAGGTTGTATAAACATTCTGCCTTCAGATG  600

seq1  TGTTTCCTCATCAAGCATGAAAGGATAAAGCAGGAAGGAGGGAAGGAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCTCATCAAGCATGAAAGGATAAAGCAGGAAGGAGGGAAGGAGAG  650

seq1  ATAGATAAATATGGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACAGAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAAATATGGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACAGAGAG  700

seq1  AATGAGGATGAATAAAGGAGTTGAGAGACCTAAGTGGGGGTCCAGAAACA  750
      ||||||||||||||||||| |||||||| ||| |||||||||||||||||
seq2  AATGAGGATGAATAAAGGA-TTGAGAGATCTATGTGGGGGTCCAGAAACA  749